Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                           <---------YAB1                   <---------YAB1                  <---------ARR11(3)                                                           ------                  --------->ARR11(3)                                                           ------                  <---------ARR14(2)                                                         --------                  --------->ARR14(2)                                                   --------->At4g35610 -------->GLK1(2)<---------GLK1(1)            ------->MYC3    --------->YAB1           <---------At4g35610 ------->YAB1   ------->TEIL    <---------At4g35610          <---------ATHB12    <---------AHL20(2)-- ---->YAB1   <---------ATHB12<-------TEIL     <-------MYC3   --------->ICU4      --------->AHL20(2)<-   ataatctttgatacaatgaatatccttgtgattcatctgtttgaaacacatgttcaatggacaatgatgcatagattagaagattaattagctcaccaaa  18530100         <---------ANAC58         <---------ANAC55(2)         --------->ANAC55(2)                                                              <---------KAN4(2)         <---------ANAC58           <---------MYB46(3)   <---------ANAC58            ================        <-----------------------TaNAC69(2)               <---------ANAC58            ---------->DOF2 >MYB46(1)                         <---------TOE2(3)     <---------ANAC46         --------->ANAC46 >MYB83<-----------GT1       --------->AHL20(2)     --------->YAB1                <---------ANAC55(2) ------->AGL15               <---------AHL20(2)     <---------ICU4                <---------ANAC46 --------->GT1             <----------DOF2       --------->YAB1                  <---------TOE2(3) --------ANAC55(2)      <---------ALFIN1   --------->ANAC46          >>>>>>>>>TBF1--------->ANAC55(2)   taagtaaaattacgagtcgattacgaccactttaattttggttacacacattgatcatgacttgttttgaagaagaaacaatttacgtaaagaataaaca  18530200                                                                                               <-----                                                                                               ------                                                                                            <--------              <-------MYC3                                                                <---------AHL20(2)              ------->MYC3                                                                --------->AHL20(2)             ==================bZIP_DOF                                                 <---------AHL20(2)             <---------ANAC55(2)                                                        --------->AHL20(2)             <---------O2                                                             <---------AHL20(2)             --------->ANAC58                                                         --------->AHL20(2)             --------->TGA1a                                                        <---------AHL20(2)             --------->O2                    --------->CCA1(2)                      --------->AHL20(2)             --------->ANAC55(2)            --------->ARR11(1)                    <---------AHL20(2)             --------->ANAC58               <---------GLK1(2)                     --------->AHL20(2)          <---------ARR14(2)                --------->ARR14(2)                  --------->AHL20(2)      <---------At4g35610        <---------AHL20(1)                            --------->AHL20(1)      --------->At4g35610        <---------ARR11(3)                            <---------AHL20(1)      <---------ZAT2             --------->ARR11(3)                           --------->AHL20(2)<----      --------->ZAT2<----------DOF2       ----------->ARR10  --------->YAB1 --------->AHL20(2)<------ ======================bZIP_DOF  --------->AHL20(1)   <---------At5g28300 --------->AHL20(2)---------   aaaatgggagcagacacgtttcctttcccttggaatattttacatagatttgcattcactgtatcagaaaaaaaaaaaaaatatatatatatatatatat  18530300       --------->YAB1    --------->TOE2(3) <-----------GT1                                       <---------AHL20(2)               --------->ARR14(2) ----AHL20(1)                                     <---------YAB1        <---------AHL20(2) --->AHL20(1)             ---------->ID1         <---------AHL20(1)    --------->AHL20(2)           - -AHL20(2)       <-----------GT1               <---------YAB1   <---------ANAC46        <---------ARR14(2) -----AHL20(2)<---------AHL20(2)           <---------DAG2   <---------ANAC58           <------ZmHOX2a(1) ---AHL20(2) --------->AHL20(2)            <----------DOF2  <---------ANAC58   ---------->DOF2    <-- >AHL20(2)   <---------AHL20(2)<-----------HVH21 <---------AHL20(2)    <---------AHL20(2)         ---   attttacattagtaattttatactatttgtctctatcacatacaactttattattttttaattcttgtgggaataaaatttcaaaggcaggaacgggaag  18530400                                                 <---------TOE2(3)                                                --------->YAB1     <---------YAB1                                      --------->ANAC58 <---------AHL20(1)                                      --------->ANAC58 --------->AHL20(1)                                      <---------ANAC55(2)        --------->ATHB51                                      --------->ANAC46 <---------AHL20(2)                                      <---------bZIP60(1)        --------->AHL20(2)                                      --------->bZIP60(1)        <---------ICU4                                      --------->ANAC55(1)       <---------YAB1                      <       --------->DAG2             <-----------HVH21   --------->YAB1                          <------      --------->DAG2             --------->bZIP60(2)  --------->AHL20(2)                  <----------     ---------->DOF2      --------->YAB1   <---------ATHB12     --------->ICU4         <---------ICU4  --------->AtMYB61      ----------------------->TaNAC69(2)  <---------YAB1           <---------AHL20(2) ---------->RAV1(1)   <------ZmHOX2a(1)    --------->ICU4  ----------->GT1        <---------YAB1    < -------ZAT18       --------->ANAC58  --------->ANAC55(2)<------------CBF  ------------>CBF  <------- ------>ZAT18       --------->ANAC58  --------->O2 <---------ICU4<---------AHL20(2)   --------->AHL20(2)   tccaccaaaaaggtgttattgtaaggaatcaaaacatgtcacgtaatcactaagaattatattgtaattatttttaatccaattcttattaattaccttt  18530500                                                                                   --------->ANAC55(2)                                                                                   <---------ANAC58                                                                                   <---------ANAC55(2)                                                                                   <---------ANAC58                                                                                   <---------ANAC55(1)                                                                                   <---------ANAC46                                                                                   <---------O2                                                                                  <-------TEIL                                                                               --------->ZAT2--------                                                                               --------->At4g35610                                                                          <---------ANAC58  ---------      <---------TOE1(3)                                            <---------ANAC58<---------TGA1a ---------YAB1    <---------ANAC58                           --------->ATHB12  <---------At4g35610 ----DOF2   <---------ANAC46                               --------->GLK1(2)   <---------ZAT2-------- -GT1 <---------TOE2(3)                             <------ZmHOX2a(1)     <---------ANAC58  <-------- ---------AHL20(2)<---------ANAC58            --------->At4g35610  <---------ANAC58--------->TGA1a --DAG2 <-----------HVH21            *TSS  --------->At4g35610     <---------ANAC46--------->O2   ---   tttttattaaggtcacttgtacttgtctctgtctctgcaagtctcatcagaagaggaagagaatcaatggcgagttgcttcagctacgtgtcttctcgta  18530600                                                                   --------->DEAR3(1)                                                                  --------->DEAR4(2)                                                                  <------NtERF2                                                                 ------>NtERF2                                                                 <---------ATERF1(1)                                                               <------NtERF2                                                               <---------ABI4(2)                                                               --------->ZAT18                                                              <---------RAP2.3(1)                                                              <---------ATERF1(1)                                                              ------>NtERF2                                                             <---------bZIP60(1)                                                             --------->bZIP60(1)                                                             --------->O2                                                             --------->bZIP60(2)                                                             --------->ANAC58                                                             --------->ATERF1(2)                                                             <---------ATERF1(2)                                                             <---------DEAR3(1)                                                             --------->ANAC46                                                             --------->ANAC58                                                            <------NtERF2                                                           <---------ATERF1(1)                                                     ------>ZmHOX2a(2)                                                    <------ZmHOX2a(2)                                                   --------->ARR14(2)                                                   --------->ARR11(3)                                                   <---------ARR14(2)     <-----------GT1                          --------->TOE2(2)--------->ATERF1(1)   ------>ZmHOX2a(2) ->ANAC46                 <---------ZAT2    ------->TEIL   ------>NtERF2            --------->PCF2 >HSFB2a(2)            <---------ANAC58     -------->P    ----------->HVH21         <------ZmHOX2a(2) ->ANAC55(2)           <---------ANAC58  --------->At4g35610--------->ATERF1(1)    --------->ARR14(2) -HSFB2a(2)    <---------At4g35610    <------ZmHOX2a(2)   --------->ETT(2)         <---------ARR14(2) ------>MYB46(3)<---------GLK1(2)     <---------ATHB12    <---------DEAR3(1) <-----------RAV1(1)   acaaatgttaccaatacagcttctctcgtgctggtctccgatcatctacctccgatcttggcgacggcaccgtcttccactgttggatcccacttactca  18530700                                             --------->ANAC58                                         <---------MYB52(2)                           <---------REM1(2) --------->ANAC58                          =================HOX2a_HOX2a                       ------>ZmHOX2a(1)--------->At4g35610                      <---------ALFIN1  <---------At4g35610              <---------ALFIN1    --------->ARR14(2)              --------->ANAC46    <---------ARR14(2)              --------->ANAC58--------->ANAC46                          --------->ETT(2)              --------->ANAC58--------->ANAC55(2) <-----------RAV1(1)   --------->MYB46(3)            <---------ALFIN1 <---------LBD16 --------->ZAT6  --------->TCP20               <---------        ------>MYB46(1)====================HOX2a_HOX2a       --------->TCP15(1)         <---------ALFIN1        --------->ANAC58  ------>ZmHOX2a(1)<---------DOF5.7(2)     <----------DOF2      --------->ANAC46        --------->ANAC58  <-----------HVH21--------->MYB52(1)<---------PCF2          --------->ANAC46        ------>MYB83------>ZmHOX2a(1)   --------->ZAT2       <---------PCF5       <-----------GT1   --------->ANAC46 =======================HOX2a_HOX2a      ----------->HVH21    <-----------GT1 <---------ALFIN1  <---------ALFIN1 ------>ZmHOX2a(2)     --------->ALFIN1    <---------MYB52(1)   catccacaccaagcccacgctcctcctccttcacgggatcggagctaacgctatgtggcagtgggaccgcttcatcgaccgttttatcccccgcttcaac  18530800                                                ------>NtERF2                                                <---------ALFIN1                                               ----------->HVH21          <-----------ARR10           --------->AtMYB61          --------->SPL7           --------->ANAC46           <----------DOF2          ------->TEIL             <---------ALFIN1 --------->At4g35610  <---------ANAC46     --------->MYB52(1)            --------->REM1(1)<---------At4g35610------>NtERF2     ------->TEIL                ------>ZmHOX2a(1)--------->MYB46(3)--------->ANAC46                -   <---------SPL7           --------->ATERF1(1)<---------ETT(1)   <-----------RAV1(2)              --  --------->ANAC55(2)      ------>NtERF2      --------->HSFB2a(2) --------->HSFB2a(2)            <---  --------->ANAC46   <----------DOF2  <---------ALFIN1    <---------GLK1(2)                      <--- -DOF2  --------->LBD16    <---------ATERF1(1)--------->DEAR3(2)  <---------HSFB2a(2)       <--------   gtctacgtaccggacctcatcttctttggcgactcctacaccactcgtcccgaccgctcagagtctttccaggcgacttgtgtcatgaaggcgatggatg  18530900                                                                           <---------TOE1(3)                                                                           <---------TOE2(3)                                                                  <---------ANAC46                                                                  --------->DEAR3(1)                                                                 <------NtERF2                                                                 --------->ATERF1(1)                                                                 --------->RAP2.3(1)                                                                <---------RAP2.6(1)                                                                <---------ATERF1(1)                                                                <---------RRTF1(1)                                                                ------>NtERF2<------ZmHOX2a(1)                                                                <---------RAP2.3(1)                                                                <---------ERF1                                                                <---------DEAR4(2)                                                                <---------ORA47(2)                                                               <---------RRTF1(3)                                                               <---------RAP2.6(2)                                                               --------->ATERF1(2)                                 <---------ZAT2                <---------RAP2.3(2)                                 <---------At4g35610           <---------RAP2.3(3)                                 --------->ZAT2    <---------ANAC58 <------NtERF2        --------->MYB59   ------>NtERF2            <---------ANAC58<---------ZAT18    --------->ALFIN1    --------->ATERF1(1)     <---------RAP2.6(2)------>NtERF2 -------->SPL7        <---------DEAR3(1) <---------MYB46(3)    <---------RRTF1(2) ------->MYB52(1)   <-----------HVH21   <---------AtMYB61      <---------DREB2C(2) ------ANAC58   <---------WRKY18(1)    <---------MYB52(1)      <---------DEAR3(1)      <---------ARR14(2) ------ANAC58  ----------->HVH21 --------->At4g35610           <---------ATERF1(2)----------->GT1 -MYB46(3)<------ZmHOX2a(1)   <------NtERF2   <-----------RAV1(1)--------->RRTF1(1) <--------P   cttacggtgttaggaccatgaccgtcgctggcctcagctacggtggttttgtggcctactccttggcggcgcagtttaaggagagggtagatcgagttgt  18531000  Previous    Next  AGI:  At4g39952.1    Description:  pentatricopeptide (PPR) repeat-containing protein. similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT3G03580.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO62249.1); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990); contains InterPro domain Pentatricopeptide repeat (InterPro:IPR002885) Range:  from: 18527674    to: 18530001    Orientation: Forward Links:  TAIR  MIPS    AGI:  At4g39955.1    Description:  hydrolase, alpha/beta fold family protein. similar to hydrolase [Arabidopsis thaliana] (TAIR:AT5G09430.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO68749.1); contains InterPro domain Alpha/beta hydrolase; (InterPro:IPR003089); contains InterPro domain Alpha/beta hydrolase fold-1 (InterPro:IPR000073); contains InterPro domain Epoxide hydrolase-like; (InterPro:IPR000639) Range:  from: 18530537    to: 18532253    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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