Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                          <------MYB83                                            --------->AHL20(2)                                            <---------ICU4                                            --------->ATHB51                                            <---------AHL20(1)    ----------->GT1                                            <--------ATHB1       <---------TOE1(2)                                            --------->YAB1   <---------WOX13(1)                 --------->ARR11(3)        <---------ATHB51--------->ATHB12                 <---------ARR11(1)        <---------ATHB12<---------MYB46(3)                <---------CCA1(2)          --------->ICU4 <---------YAB1             <------ZmHOX2a(2)   <---------At5g28300<---------MYB46(3)     --------->ANAC58            --------->ARR11(3)  <-----------GT1     <-----------RAV1(1)    --------->ANAC58            <---------ARR11(3) <---------YAB1    <-----------RAV1(1)  --------->WOX13(1) -------->AHL20(2)  <----------DOF2<-----------RAV1(1)  <------MYB46(1) <---------ATHB12   aaaaaaatggccaagatcaaatctttagatgttattactgtcgcaataattttgttgttggtgattgcaggttaatcaagcactcttatttttctcattt  18515300                                                                                                <----                                                                                             <-------                                                                                             --------                               <---------AHL20(2)                                         <----------DOF2                               <---------AHL20(1)                                         <---------DAG2                               --------->AHL20(1)                                   <---------ICU4                          ------->TEIL                                              <---------------AtSPL8                     <---------ICU4                                                 --------------->AtSPL8                     --------->YAB1                                                --------->ICU4  <-                  --------->YAB1                               <-----------GT1  --------->AHL20(2)<--               --------->CCA1(2)      ---------->DOF2<----------DOF2            <---------AHL20(2)<--    <-------TEIL <---------AHL20(2) <---------AHL20(2)<---------MYB52(1)    <----------DOF2  <-------   tcaaaatacgttcttagatataatcatgtatattatattttaaagcttacaattcctttggttttatacattacatttctttttaattagtactttttat  18515400                                                                     <------NtERF2                                                                     --------->At4g35610                                                                     <---------At4g35610                                                                     --------->ZAT2                         <---------At5g28300                 --------->ATHB12                       --------->ICU4                       <---------YAB1            --------->ANAC58                              --------->YAB1--------->At4g35610         <------ZmHOX2a(2)                               ----------->HVH21 -----YAB1  --------->ANAC58                             ----------->TGA1     <---------AtLEC2 --YAB1 --------->ARR11(3) <---------ZAT6                <---------ATHB12 <----------DOF2 ->AHL20(2) --------->ANAC46                             --------->ICU4 --------->ZAT2 --------YAB1  --------->MYB52(1)                    <---------ZAT14 <---------ZAT2 -------AHL20(1)  ------->GAMYB                      --------->ZAT14------>NtERF2 -------AHL20(2)--------->At4g35610               <---------ANAC58 <---------ATERF1(2)  ----------->GT1 --AHL20(2)--------->WOX13(1)                     <---------ANAC58 --------->ATERF1(2) --------->DAG2   tatttttgtagatcaagcaactgcaattactgttcaagccgattgtattggaccgtgcaatgacgattgccagcagctttgcaagtcgaaaggttacaca  18515500                                              --------->AtMYB61                                             --------->MYB46(3)                                             <---------MYB55(2)                                           --------->ANAC46                                           --------->ANAC58                                           --------->ANAC58                                    <-----------RAV1(1)                                    <---------REM1(1)       <---------ARR11(1)                     <-             --------->ATHB12       <---------MYB46(3)      --------->ARR11(3)              --------- <---------ZAT14                 <---------MYB46(3)        <---------CCA1(2)          --------->MYB46(3)   gactggacttgtgcatcatttagaaccaagtcgagttgttgttgcaaaccaccgagacatcaaatctttgaacaaaatgctcaattgaacaactaaaacc  18515600                                                      --------->AHL20(2)                                                      --------->AHL20(1)                                                      <---------AHL20(2)                                                     <---------AHL20(2)                           --------->TOE2(3)         --------->AHL20(2)                          <--------HAHB4             --------->ICU4                                 <                          <---------ICU4             <---------ATHB51                            ----                         <---------YAB1         --------->ANAC58            <---------YAB1      <----                         --------->ICU4         --------->ANAC58     <------------CBF         -------   <---------AHL20(2)   --------->ARR11(3)    --------->CCA1(2)   <---------ATHB12          --------- ---------DOF2          <---------ARR11(3)  --------->YAB1        ------------>CBF          <-------- ->DOF2                --------->YAB1    ---------->DOF2        --------->GLK1(1)  <-----------GT1 <-   gcttttatattgttctcaatttgtatgatcattaacaaatattcaaagataagaaataatttagagaaatcaattgatatcattttttcttatcacttat  18515700                                                                                                  <-- ---------ICU4                                   <---------YAB1                                <----- ----->YAB1                                  <XXXXXXXXXXXXXXXXXXXXMIR406                      ------>NtERF2 -----YAB1                               --------->TOE2(3)                                  <-------- -->YAB1                                 --------->TOE1(3)                                --------->ANAC46 >ANAC55(2)                       <---------TOE2(3)                         <---------YAB1--------->ANAC58 -ANAC55(2)                ----------->GT1 *TSS--------->YAB1     --------->YAB1          --------->ANAC58 --------YAB1         <----------DOF2   ----------->RAV1(2)      <---------YAB1          --------->RAP2.6(3)   catcattctactcttgattttgggctattttgtaataagataacctgaattacaatagcactgtttgatcatagtattttcatttgattaaaacggcacc  18515800                                          <---------SPL7                                          ------>NtERF2                                         --------->RAP2.3(2)                                         --------->RAP2.6(2)                                         --------->DEAR3(1)                                        <------NtERF2                                        --------->ATERF1(1)                                        --------->DEAR4(2)                                        --------->ORA47(2)                                        --------->RAP2.3(1)                                       ------>NtERF2                                       --------->ABI4(1)                                       <---------ATERF1(1)                                      --------->RAP2.3(3)                                      --------->RAP2.3(2)                                           -                                      --------->DEAR3(1)                                            <                                      --------->RRTF1(3)                                           --                                      <---------DEAR3(1)                                          <--                                     --------->DEAR4(2)                                           ---                                     --------->ERF1                                              ----                                     --------->RAP2.3(1)                                        <----                                     --------->ORA47(2)     ----------->GT1                     <----                                     --------->ATERF1(1)   ----------->GT1                     ------                                     --------->RRTF1(1) --------->ZAT2                     <---------ZAT2  ----------->GT1                   <---------ATERF1(1) <---------ZAT2                     <---------At4g35610 <---------TOE1(3)                 --------->ANAC58 --------->ANAC58                       --------->At4g35610 --------->MYB59                   --------->ANAC58 --------->ANAC46                       <---------GLK1(1) <---------TOE2(3)                --------->SPL7    --------->ANAC58                       --------->ZAT2 -------MYB52(1)              --------->HSFB2a(2) --------->YAB1                     <-----------HVH21 -NtERF2                      <---------HSFB2a(2)<---------ATHB12                   <---------MYB46(3) -ABI4(2)                    <---------LBD16   --------->WOX13(1)      --------->CCA1(2)   --------->GLK1(1)   gtttaggttaatcttggtcttagttttcgattcgggaacgccgccgtcccaatcacacaactgggtaaaaacgatatggaagacgatggtcagagctccg  18515900              ------>ZmHOX2a(2)              <---------LBD16            <---------AGP1            --------->AGP1            <---------ARR14(2)            --------->ARR11(1)            --------->ARR11(3)            <---------ARR11(3)          ----------->ARR10 --------->ANAC46 -------->RAP2.3(1)                                                                        ---------- ------NtERF2--------->ARR14(1)                                                          <---------At4g35610 ---->NtERF2--------->ARR14(2)                                         <---------ZAT2    --------->At4g35610 -------DEAR3(1)                                                       --------->ZAT2    ----------->RAV1(2) ------>DEAR3(1)                                               <-----------HVH21       <-----------GT1 ----->ATERF1(1)                                     <-----------ARR10------>MYB83  <---------GLK1(2) -----ATERF1(1) --------->LBD16         --------->CCA1(2)     --------->ANAC58      --------->ARR14(2) -------HVH21--------->CCA1(2)         <---------ARR11(3)     --------->ANAC58      <---------ARR14(2) --->DEAR3(1)<------ZmHOX2a(2)       <---------YAB1 <---------CCA1(2) ------>MYB46(1) <-------TEIL   tcgccgaaaccctagatccggcattgcagaagaagcaccatgatatgctcgagcgtctctccgctcgtcaccaagctcgaaaatcagattcacctgactc  18516000                                                                                              <------                                                                                              -------                                                                                              -------                                                                                          <----------                                                                                        ------>NtERF2                                                                                       --------->DEAR3(1)                                                                                    ------>ZmHOX2a(2)                                                                                    =================                                                                                   ==================                                                                                   ==================                                                                                   <---------GLK1(1)                                                                                   <------ZmHOX2a(2)               <---------ALFIN1                                                    --------->GLK1(1)             ------>ZmHOX2a(1)                                                    --------->ARR14(2)       ---------->ID1                           <---------GLK1(2)                 <---------ARR14(2)- ------>ZmHOX2a(1)                   <---------CCA1(2)             <------ZmHOX2a(2)================= ->HVH21 <---------SPL7           ------>ZmHOX2a(1)         ---------->DOF2   <---------LBD16 -------   ttcctcttcgtcgtcctccactcttgaatcgacttcctcgtttctcgctaaattctccgattcaaagcgatccatcgagtctcggatcgccgagtcacga  18516100                                                  ------>ZmHOX2a(2)                                                 --------->GLK1(1)                                                 <---------GLK1(1)                                                 <------ZmHOX2a(2)                                                --------->ARR14(3)                                                <---------ARR14(2)                                                --------->ARR14(2)                                                --------->ARR11(3)                                                <---------ARR11(3)                    <-----------HVH21           <---------ARR14(3)                  <-------TEIL                 --------->GLK1(1)                --------->ARR14(2)            ----------->ARR10                <---------GLK1(2)      ------>ZmHOX2a(2)         =====================================HOX2a_HOX2a ---O2   ====================================HOX2a_HOX2a -->ANAC58      <---------ARR14(2)   <---------AGP1 <---------LBD16          <---------HSFC1(2) -->ANAC58  <---------LBD16          <-----------ARR10                       --------->HSFC1(2) -HVH21  ------>ZmHOX2a(1)           <---------ARR14(2)                      <---------HSFB2a(1) ===============HOX2a_HOX2a          --------->ARR14(2)                     ----------->ARR10 ===============HOX2a_HOX2a          <---------ARR11(3)                     <-----------ARR10 ============HOX2a_HOX2a             --------->ARR11(3)            --------->GLK1(2)                < ---------------------->TaNAC69(2)  <---------ARR14(1)--------->LBD16   <---------HSFB2a(2)      <--- ============HOX2a_HOX2a            <---------CCA1(2)--------->ANAC46   --------->HSFB2a(2)      <--- -->O2------>ZmHOX2a(1)---------->DOF2<------ZmHOX2a(2)        --------->YAB1--------->HSFB2a(1) ----   ctcgcttcctcctctacggattcgtcaaagcttaagtcggatcttgctgagatctccgtagccattgacaatctcgagaagcttctcgctgagaactcgt  18516200  Previous    Next  AGI:  At4g39917.1    Description:  LCR45 (Low-molecular-weight cysteine-rich 45). Identical to Putative low-molecular-weight cysteine-rich protein LCR45 precursor (LCR45) [Arabidopsis Thaliana] (GB:P82760); contains domain PD687080 (PD687080) Range:  from: 18515207    to: 18515596    Orientation: Forward Links:  TAIR  MIPS    AGI:  At4g39920.1    Description:  POR (PORCINO); binding. similar to unnamed protein product [Vitis vinifera] (GB:CAO62950.1); contains InterPro domain Tubulin binding cofactor C (InterPro:IPR012945); contains InterPro domain CARP motif; (InterPro:IPR006599) Range:  from: 18515743    to: 18517268    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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