Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                      <-------GAMYB                               <----                                                   ----------->GT1               --------->MYB46(3) -                            ----------->GT1        <---------MYB46(3)          ----------->RAV1(1)<-- ---------ANAC58<---------------AGL15    --------->GLK1(1)                  --------->ANAC58   <----- ---------ANAC58--------------->AGL15<---------TOE2(3)                      --------->ANAC46--------- -----ANAC81    <----------DOF2<---------AHL20(2)  --------->MYB55(2)       --------->ANAC58<--------   tttcgtttttgttaatttcttttttaagagaagttaattagggatttcaatggtggttaaaaccgaagctatatttgcaagcaacaaatcgcatttttat  18394900                                       --------->MYB55(2)                               <---------ANAC55(2)                                       <---------MYB46(3)                               <---------ANAC46 -----YAB1     <------MYB83           <---------AtMYB61                            ----------->GT1 -------->MYB52(2)                  <---------ANAC46                             <---------LBD16 -------MYB52(1)        <---------AHL20(2)    <------------CBF                 <-----------GT1  <---- ----TOE2(3)   <------MYB46(1)    <---------ZAT14 <---------ANAC58         <----------DOF2  <-------- >AHL20(2) <---------ZAT2         --------->ZAT14 <---------ANAC58   <---------YAB1--------->LBD16 -AHL20(2) --------->ZAT2  <---------YAB1<--------P      <---------ICU4 ------->TEIL <---------MYB52(1)   gttagtttttctaagcttggtcatattttataaatgtgtagtggttgctattgtttgcataatcacttgttatgaaacttttatccggttaagtatatat  18395000                                                                               ======================                                                                               <---------TGA1a                                                                               --------->ANAC46                                                                             xxxxxxxxxxxxxxx>smallRNA(le3)                                                                             xxxxxxxxxxxxxxxx>smallRNA(i)                                                                      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(l2)                                                                      xxxxxxxxxxxxxxxx>smallRNA(s)                                                                     xxxxxxxxxxxxxxxxx>smallRNA(si3)                                                                   xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                                  <---------ANAC46                                                                  <---------ANAC55(2)                                                                  --------->ANAC55(2)                                                                  <---------ANAC55(1)                                                                  <---------ANAC58                                                                  <---------ANAC58                                                                 xxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                                 xxxxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                                 xxxxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                             <---------HSFB2a(1)                                                             xxxxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                             <---------HSFC1(2)<---------O2                                                             --------->HSFB2a(1)                                                             --------->HSFC1(2)--------->TGA1a                                                            xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                           xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                           xxxxxxxxxxxxxxxx>smallRNA(s)                                                           xxxxxxxxxxxxxxxx>smallRNA(se3)                                                           xxxxxxxxxxxxxxx>smallRNA(si3)                              <------NtERF2           --------->ARR14(2)    xxxxxxxxxxxxxxxx>smallRNA(s)                            <---------ANAC46        xxxxxxxxxxxxxxxxxxxx>smallRNA(l2)                         --------->ALFIN1           xxxxxxxxxxxxxxxx>smallRNA(s)<-----------HVH21                       <---------ANAC58            xxxxxxxxxxxxxxxxxxx>smallRNA(le3)                       <---------ANAC58            xxxxxxxxxxxxxxxx>smallRNA(i)--------->O2                       <---------ANAC46            xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                      xxxxxxxxxxxxxxxxx>smallRNA(fl3) xxxxxxxxxxxxxxxx>smallRNA(s)                      xxxxxxxxxxxxxxxxxx>smallRNA(se3)xxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                      xxxxxxxxxxxxxxxx>smallRNA(s)xxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                      xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)   xxxxxxxxxxxxxxxx>smallRNA(si3)                      xxxxxxxxxxxxxxxxx>smallRNA(si3)xxxxxxxxxxxxxxxx>smallRNA(i) <---------ANAC46                      xxxxxxxxxxxxxxxxxx>smallRNA(si3)xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                      xxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                      xxxxxxxxxxxxxxxxx>smallRNA(se3)xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                      *TSS <------NtERF2         xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                      xxxxxxxxxxxxxxxx>smallRNA(i)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                      xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) xxxxxxxxxxxxxxxx>smallRNA(s)                      xxxxxxxxxxxxxxxxxxxx>smallRNA(se3) xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2)                      xxxxxxxxxxxxxxxxxxx>smallRNA(se3)  xxxxxxxxxxxxxxxx>smallRNA(fl3)                      xxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)xxxxxxxxxxxxxxxx>smallRNA(i)                     <------ZmHOX2a(2)           xxxxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)        ---                    --------->GLK1(2)            xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)----------->GT1                    --------->ARR14(2)           xxxxxxxxxxxxxxxx>smallRNA(s)xxxxxxxxxxxxxxx>smallRNA(si3)                    <---------ARR14(2)       ----------->HVH21 xxxxxxxxxxxxxxxx>smallRNA(le3)    ----                    <---------ARR11(3) <---------ANAC58 xxxxxxxxxxxxxxxxxx>smallRNA(si3)         ----                   <------ZmHOX2a(1) <xxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)   xxxxxxxxxxxxxxxx>smallRNA(s)      ----------->RAV1(1)<---------DEAR3(1)----------->RAV1(2)xxxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)      --------->MYB52(1)--------->LBD16<---------ANAC58<------ZmHOX2a(2) xxxxxxxxxxxxxxxx>smallRNA(s) -----AHL20(2)----------->RAV1(1) --------->YAB1xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)         <----- ---TBP --------->ZAT6------>ZmHOX2a(2)<---------ANAC46xxxxxxxxxxxxxxxx>smallRNA(le3)  <-------TEIL   aatgaagccaacagtacaacaggatccgtggcgcaatggtagcgcgtctgactccagatcagaaggttgcgtgttcgattcacgtcgggttcaaataccc  18395100           ------>ZmHOX2a(1)          --------->TOE2(3)         ------>ZmHOX2a(2)         =========================HOX2a_HOX2a        <------ZmHOX2a(2)        ==========================HOX2a_HOX2a       --------->ARR11(3)       <---------ARR11(3)       <---------ARR14(2)       --------->ARR14(2)       --------->AGP1     ----------->ARR10     --------->MYB59 ==========================bZIP_DOF--------->HSFB2a(2)                                --------->At4g35610 ------>LBD16       <---------AHL20(2) --------->MYB52(1)                    <---------ALFIN1      -- ----->LBD16    <----------DOF2    <---------HSFB2a(2)                --------->RAP2.6(3)   <-------- ----->ANAC46   <---------DAG2   <---------AHL20(2)                  --------->MYB52(1)    <--------- ----LBD16--------->TOE1(3)------>ZmHOX2a(1)                    <-----------GT1       <---------At4g35610   cgaaaattagatccttaacttttttattcctgtatttatagaaacggcccaattgttttgctgtatttacaaaacggcccaacttgtttgctgcttcact  18395200                                             ------>NtERF2                                             --------->LBD16                                            --------->ANAC58                                            --------->ANAC46                                           <---------LBD16                                         --------->ARR14(2)                     <-------GAMYB       <---------ARR14(2)      ----------->GT1                     <---------ANAC58 --------->TOE1(3)        ---------->DOF2    <<<<<<<<<WRKY18              <---------DAG2       <-----------GT1         --------->MYB59        <---------WRKY12   ------->TEIL     <---------MYB46(3)--------->TOE2(3)<------ZmHOX2a(1)         ------------>CBF ------------->AtSPL8<---------ANAC58 <---------DAG2 <---------TOE2(3)     <---------DAG2 -ZAT14       <----------DOF2 --------->At5g28300  ---------->DOF2         <----------DOF2          < -DOF2--------->ANAC46       ----------->GT1--------->ANAC58 <------ZmHOX2a(1)  --------->TOE2(3)   -   gaatgtaccctcaaaacttttttggttgcaactgtaaaaaccttatccgccattaaaggattaggaaaagaaaaaaacttttcgtcaatggactacttgt  18395300                                                                                                    <                 ----------->ARR10                                  <---------ANAC58            <----          <-----------TGA1                                 --------->YAB1                  <---------DEAR3(1)          <-----------HVH21      <---------CCA1(2)        <------ZmHOX2a(2)               <------NtERF2 ---------bZIP60(1) --------->GLK1(2)               --------->MYB52(1)                  <---------DEAR3(1) -------->bZIP60(1)<---------GLK1(2)           ---------->DOF2      <---------ANAC58--------->ARR11(3)   tgacatcaccttcgtcactgagattctccgatttcatctcttcgattcccaaagaaaccgatcacaaatggcttcgcttctcagtaaatctcggcgatgc  18395400                            <---------ANAC58                            <---------ANAC58              <---------TOE1(1)              <---------TOE2(1)     <---------ETT(2)      <---------ANAC58                                   ----------->GT1     <---------DEAR3(1)    <---------ANAC58                                 ----------->GT1     --------->ETT(2)      <---------DEAR3(1)                           --------->LBD16     <---------WRKY12  <---------ANAC58                                <---------ANAC46     <---------WRKY38(1)  <---------LBD16          --------->HSFC1(2) <---------ZAT14    <---------------------WRI1                     <---------HSFC1(2) --------->ZAT14        <------- <---------AtMYB61     <---------ANAC58         <------ZmHOX2a(1)     <---------LBD16    --------->ALFIN1 ------ZmHOX2a(1) <------ZmHOX2a(1)            ----------->GT1        --------->ZAT18  <---------ANAC58 -----ANAC46<------ZmHOX2a(1)          <-----------HVH21             --------->ALFIN1  <---------ANAC58   gaggaggtcgacgaggacgaggataacttgcggtgcgatttcgtcaaggaggaaacttgctgagagagagagtgcggagagagaaaatagagtgctggtt  18395500                                                                  <---------SPL7                                                             <---------AtMYB61                                                          ----------->HVH21                                                        <---------ANAC58                                                        <---------ANAC55(2)                         <                                                        <---------ANAC46                <-----------GT1                                                        <---------ANAC58              <---------ANAC58                    ----------->HVH21                   --------->ANAC55(2)  <---------YAB1  <-------                    <---------ZAT6                     <-------TEIL         >>>>>>>>>>>>>>>>>LFY    -          <---------ANAC46                         <---------ICU4----------->GT1      <---------ANAC58 --MYB46(3)   <------ZmHOX2a(1)--------->ATHB12    <---------------AtSPL3 ----------->HVH21<---------   cggagtcttatgtcgaggattagtgacagagagccattggtgaagacgcttgataagtacgtgaaggtcgtaagatgtgaccattgtttcttactctttg  18395600             <----------ID1          --------->DAG2                                                         <---------ARR11(3)     <------MYB83                                                                --------->ARR14(3)     <------MYB46(1)                                                    <---------ZAT6     ----------->GT1                                                    ----------->GT1         <---- ---------ARR11(3)                                           <---------GLK1(2)   <---------ARR14(2) ---DOF2 ---------->DOF2                                    <---------At4g35610  --------->ARR11(3) < -------->ARR11(3)                           ------>ZmHOX2a(1)   <---------ANAC46<---------ARR14(3) - ------AGL15 ----------->GT1                <---------MYB59 --------->At4g35610  <---------GLK1(2)<--   aagagcttggtaaaagcgataaatggctacaatgtctcgaggtagtcctaatttggagtttcagcttctgtgtattgttagaagattttggattgttttt  18395700         <---------At4g35610    ------>ZmHOX2a(1)                    <-------GAMYB    <----------DOF2                     <---------MYB46(3)  ------>ZmHOX2a(2)                     ----------->GT1 -------GT1                  <---------GLK1(2)                         --------->YAB1         <------ ---------ARR11(3)     <-------TEIL    ---------->ID1         --------->ANAC58          <---------TOE1(3) -------->ARR11(3)<---------WOX13(1)   <---------TOE2(3)      --------->ANAC58      <----------DOF2 -------YAB1  <---------WOX13(1) <---------YAB1     <<<<<<<<<<<<<<<<<LFY <---------YAB1 <---------TOE2(3)   atgatccttttagctcattgatggattcatagattgtgtttgtggttatttatgttccaatggcaagactgtatcatgaaaccatgctttgaggttttac  18395800  Previous    Next  AGI:  At4g39615.1    Description:  pre-tRNA. tRNA-Trp (anticodon: CCA) Range:  from: 18395022    to: 18395093    Orientation: Forward Links:  TAIR  MIPS    AGI:  At4g39620.1    Description:  EMB2453 (EMBRYO DEFECTIVE 2453). similar to EMB2750 (EMBRYO DEFECTIVE 2750) [Arabidopsis thaliana] (TAIR:AT3G06430.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO71784.1); contains InterPro domain Pentatricopeptide repeat (InterPro:IPR002885) Range:  from: 18395288    to: 18397572    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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