Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                <---------ZAT2              <---------At4g35610              --------->ZAT2                                                                        <              --------->At4g35610                                                           <--------           <---------ANAC58                                                        <---------ARR14(2)           <---------ANAC46                                                        --------->ARR14(2)           <---------ANAC58                                                       <---------GLK1(1)--      <---------ANAC58                                                         --------->ANAC46   <--      <---------AtLEC2                                                         <---------TOE2(3) <---      <---------ANAC58                                                     ==========================  <---------ANAC58             ----------->GT1                             <----------DOF2 --------->MYB52(1)  <---------ANAC46       ---------->DOF2              <---------AtLEC2    <----------DOF2  <---------  <---------ANAC58  --------->ANAC46       <---------TOE2(3)              =========================== --------AtMYB61  <---------ALFIN1         <---------TOE1(3)            ------>NtERF2  --------->LBD16   tgtggtttgcatggcgagctccacgactaaagaaggtaaacatttagggttttcttgaatggaaagacttactcggcctttacggtatccgaataacgtt  18394300                            ------>ZmHOX2a(2)           --------->ANAC55(2)           <---------ANAC55(1)      ----------------->AGL1           <---------O2   --------->TCP16(1)           --------->O2   --------->TCP20           ==============================MYC_MYB           <---------ANAC46 <---------LBD16           <---------ANAC58--------->ARR14(1)           <---------TGA1a--------->ARR14(2)           <---------bZIP60(2)    --------->ANAC58                  --------->ANAC58    <---------YAB1     --------->ALFIN1                             --------->ANAC58 ---------MYB52(1)   <---------bZIP60(2)                          <---------ANAC58 -TOE2(3)  <---------ANAC58<------ZmHOX2a(2)                      <---------ANAC58      <---------YAB1 ------->LBD16       <---------ANAC46      <---------LBD16  --------->ARR14(2)<------MYB46(1)       - -------ANAC46  <---------ANAC46  --------->ANAC58      <---------LBD16      <---------AtMYB61      < ------LBD16 --------->ALFIN1   <--------P<---------LBD16--------->LBD16 <---------ANAC46--------->ATHB12 ====================bZIP_DOF  <---------MYB52(1)      <---------LBD16  <---------LBD16 --------->ICU4 --GT1  ----------->HVH21 <---------ARR14(2)--------->LBD16 <---------ARR14(2)<------MYB83      ----- ====================bZIP_DOF --------->LBD16   ----------->GT1   <---------AtLEC2 ----------->GT1<--   ccggtgattcttgacgtgttgtgatgtggatccggtaagcctaaaccgggatgtataaccgggattttgcatgctacggatggtgttgtaaagattggga  18394400                                                                                                <----                                                                                              <------                                                                                             <------NtERF2                                                                                           <---------ANAC58                                                                                           <---------ANAC46                                                                                           <---------ANAC58                                                                                          <---------LBD16                                                                                        --------->ALFIN1                                                                                        ----------->HVH21                                                                                      <---------O2                                                                                      ===============                                                                                      --------->O2                                                                                      --------->TGA1a              <---------ANAC58                                           <------ZmHOX2a(1)<------NtERF2              <---------ANAC46                                     <---------ANAC58   <---------ANAC58              <---------ANAC55(2)                                  <---------ANAC58   <---------TGA1a              <---------ANAC58                                     <---------ANAC46   <---------ANAC58         --------->ANAC46                                         <------NtERF2--------->ARR11(3)<--- <------ZmHOX2a(2)                                <----------DOF2--------->MYB55(2)   <---------ANAC46 -------->ARR11(3)                --------->MYB52(2)             <---------MYB46(3)   <---------bZIP60(2) ---------ARR11(3)   --------->GLK1(2)      <-----------GT1     <---------RAP2.6(2)----------->TGA1 < ----->DOF2  <-------TEIL         <---------MYB46(3)         --------->ALFIN1 <------ZmHOX2a(1) ----- -------HSFB2a(1)--------->SPL7 <---------MYB52(1)==============================================bZIP_DOF   aagatcgaaacacggtgcgtaagactctgaaaacgtttgttctgtttttcttcttttttgaagatggtggctggaggagaggatgttgacgtggcggagt  18394500         <---------DEAR3(1)       <-----------HVH21      --------->TGA1a                                      --------->ARR11(3)      <---------TGA1a                                   >>>>>>>>>TBF1      =====================MYC_MYB             --------->ALFIN1 -----AtMYB61                                 <------ZmHOX2a(1) ---ANAC46 <------NtERF2                    --------->ALFIN1 ==========================MYC_MYB         <------ZmHOX2a(1) ------MYB46(3)                          <---------TOE2(3) <---------ARR11(3) ---------MYB46(3) <-------GAMYB<------ZmHOX2a(1)<------ZmHOX2a(1)                 <---------GLK1(2) ---->ALFIN1      --------->ALFIN1 <------ZmHOX2a(1)<------ZmHOX2a(1)            <---------YAB1   ggttgtggacgtcggagagggtgttggagacgaaggaggaattgaggaggaggaggaagaagaacttgtagccattggatttgatgattctcccattaga  18394600                                             ----------->HVH21                                             ------->GAMYB                                             --------->DEAR3(1)                                <----------DOF2                              <------ZmHOX2a(2)                             --------->ARR14(2)                             <-----------ARR10                             <---------ARR11(3)                             --------->ARR14(3)                ---------->DOF2------>ZmHOX2a(2)                           <---------HSFB2a(2)        <---------DEAR3(1)   <---------ARR14(3)                            --------->HSFB2a(2)       --------->SPL7        --------->ARR11(3)                           --------->REM1(2)      --------->SPL1(1)      <---------ARR14(2)     ------>NtERF2 ------>MYB46(1)      <---------SPL1(1)      <---------AGP1 --------->DEAR3(2)   --------->MYB52(1)     <---------SPL7    <------ZmHOX2a(1)  ------>NtERF2  ---------->DOF2------>ZmHOX2a(1)    ==========================HOX2a_HOX2a--------->DEAR3(1)     --------->TOE2(2)              <-----    ------>ZmHOX2a(2)  ===============HOX2a_HOX2a------>NtERF2  --------->TOE1(2)            --------   <------ZmHOX2a(2)   ==============HOX2a_HOX2a--------->DEAR3(1)------>MYB83              <--------   ===========================HOX2a_HOX2a--------->MYB46(3)    --------->DEAR3(2)          <---------  <------------------SPL14 ----------->ARR10--------->MYB46(3) --------->MYB46(3)       <----------DOF2   cgacgatcgtacggcgaagaaagaaggagaagatctttcttcgacgaccgacgacgactaaaagaaccaacgtccttgtagaaatgtagtcttttttctt  18394700                                                             <---------YAB1                                                          ------>ZmHOX2a(1)                                                         --------->TOE2(3)                                                         --------->TOE1(3)                                 --------->YAB1        <---------ATHB12     --------->At4g35610        ----------->GT1       ------>MYB83     <---------At4g35610    <---------AHL20(2)        ------>MYB46(1)                   <----------DOF2 <----------DOF2       <---------YAB1              ------------>CBF                  <-----------GT1 -----DOF2          ------>ZmHOX2a(1)          --------->TOE2(1)            <---------AHL20(2)      < -->ID1            <---------ALFIN1            --------->TOE1(1)        <------------------------ANAC81 ---GT1          ------>ZmHOX2a(1)     *TSS   ------>ZmHOX2a(1)--------->TOE2(3) <------------------- ---------------ANAC81 ------>ZmHOX2a(1)      --------->HSFB2a(2)  <------------------------ANAC81  <   tttctttagctctctattcctcctccttattgaattgataattttctcctagtaccaatccttatccttgaatttgatttttttgtttttcttttctaaa  18394800                                                    <-------GAMYB                               <----                                                   --------->MYB55(2)            --------->MYB46(3) -                            ----------->GT1        <---------MYB46(3)          ----------->RAV1(1)<-- ---------ANAC58--------------->AGL15    --------->GLK1(1)                  --------->ANAC46   <----- -----ANAC81    <---------------AGL15<---------TOE2(3)                      --------->ANAC58--------- ---------ANAC58<----------DOF2<---------AHL20(2)  ----------->GT1          --------->ANAC58<--------   tttcgtttttgttaatttcttttttaagagaagttaattagggatttcaatggtggttaaaaccgaagctatatttgcaagcaacaaatcgcatttttat  18394900                                       --------->MYB55(2)                               <---------ANAC46                                       <---------MYB46(3)                               <---------ANAC55(2) -----YAB1     <------MYB46(1)        <---------AtMYB61                            --------->LBD16 -------->MYB52(2)                  <---------ANAC46                             <---------LBD16 -------MYB52(1)        <---------AHL20(2)    <------------CBF                 <-----------GT1  <---- ----TOE2(3)   <------MYB83       --------->ZAT14 <---------ANAC58         <----------DOF2  <-------- >AHL20(2) <---------ZAT2         <---------ZAT14 <---------ANAC58   <---------YAB1----------->GT1 -AHL20(2) --------->ZAT2  <---------YAB1<--------P      <---------ICU4 ------->TEIL <---------MYB52(1)   gttagtttttctaagcttggtcatattttataaatgtgtagtggttgctattgtttgcataatcacttgttatgaaacttttatccggttaagtatatat  18395000                                                                               <---------TGA1a                                                                               --------->TGA1a                                                                               --------->ANAC46                                                                             xxxxxxxxxxxxxxx>smallRNA(le3)                                                                             xxxxxxxxxxxxxxxx>smallRNA(i)                                                                      xxxxxxxxxxxxxxxx>smallRNA(s)                                                                      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(l2)                                                                     xxxxxxxxxxxxxxxxx>smallRNA(si3)                                                                   xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                                  <---------ANAC55(2)                                                                  <---------ANAC58                                                                  <---------ANAC55(1)                                                                  <---------ANAC46                                                                  <---------ANAC58                                                                  --------->ANAC55(2)                                                                 xxxxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                                 xxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                                 xxxxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                             xxxxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                             --------->HSFC1(2)--------->O2                                                             <---------HSFC1(2)======================                                                             --------->HSFB2a(1)                                                             <---------HSFB2a(1)                                                            xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                           xxxxxxxxxxxxxxx>smallRNA(si3)                                                           xxxxxxxxxxxxxxxx>smallRNA(si3)                                                           xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                           xxxxxxxxxxxxxxxx>smallRNA(se3)                              <------NtERF2           xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                            <---------ANAC46        xxxxxxxxxxxxxxxxxxxx>smallRNA(l2)                         <---------DEAR3(1)         xxxxxxxxxxxxxxxx>smallRNA(s)<-----------HVH21                       <---------ANAC58            xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                       <---------ANAC58            xxxxxxxxxxxxxxxx>smallRNA(i)<---------O2                       <---------ANAC46            xxxxxxxxxxxxxxxxxxx>smallRNA(le3)                      xxxxxxxxxxxxxxxxx>smallRNA(fl3) xxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                      ------>ZmHOX2a(2)          xxxxxxxxxxxxxxxx>smallRNA(s)xxxxxxxxxxxxxxx>smallRNA(si3)                      xxxxxxxxxxxxxxxxx>smallRNA(se3)xxxxxxxxxxxxxxxx>smallRNA(i)                      xxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)   xxxxxxxxxxxxxxxx>smallRNA(s)                      xxxxxxxxxxxxxxxxxxx>smallRNA(se3)    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                      xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) xxxxxxxxxxxxxxxx>smallRNA(s)                      xxxxxxxxxxxxxxxxxxxx>smallRNA(se3) xxxxxxxxxxxxxxxx>smallRNA(fl3)                      xxxxxxxxxxxxxxxxxx>smallRNA(si3)xxxxxxxxxxxxxxxx>smallRNA(s)<---------ANAC46                      xxxxxxxxxxxxxxxxx>smallRNA(si3)xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                      xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)xxxxxxxxxxxxxxxxxx>smallRNA(si3)                      *TSS <------NtERF2         xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                      xxxxxxxxxxxxxxxx>smallRNA(s)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                      xxxxxxxxxxxxxxxxxx>smallRNA(se3)--------->ARR14(2)    xxxxxxxxxxxxxxxx>smallRNA(s)                      xxxxxxxxxxxxxxxx>smallRNA(i)xxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                     <------ZmHOX2a(2)           xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                    --------->ARR14(2)           xxxxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)        ---                    --------->GLK1(2)        ----------->HVH21 xxxxxxxxxxxxxxxx>smallRNA(le3)    ----                    <---------ARR11(3) <---------ANAC58 xxxxxxxxxxxxxxxx>smallRNA(i)----------->GT1                    <---------ARR14(2) <---------ANAC46<------ZmHOX2a(2)  xxxxxxxxxxxxxxxx>smallRNA(s)                   <------ZmHOX2a(1) <xxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)  xxxxxxxxxxxxxxxx>smallRNA(s)      --------->MYB52(1)--------->LBD16<---------ANAC58xxxxxxxxxxxxxxxx>smallRNA(le3)            ----      ----------->RAV1(1)--------->ALFIN1  ----------->RAV1(2)xxxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3) -----AHL20(2)----------->RAV1(1) --------->YAB1xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) <-------TEIL ---TBP --------->ZAT6xxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2) <-----   aatgaagccaacagtacaacaggatccgtggcgcaatggtagcgcgtctgactccagatcagaaggttgcgtgttcgattcacgtcgggttcaaataccc  18395100           ------>ZmHOX2a(1)          --------->TOE1(3)         =========================HOX2a_HOX2a         ------>ZmHOX2a(2)        ==========================HOX2a_HOX2a        <------ZmHOX2a(2)       --------->AGP1       --------->ARR14(2)       <---------ARR11(3)       --------->ARR11(3)       <---------ARR14(2)     ----------->ARR10     --------->MYB59 ==========================bZIP_DOF<---------HSFB2a(2)                                <---------At4g35610 ------>LBD16       <---------AHL20(2) --------->MYB52(1)                    <---------ALFIN1      -- ----->ANAC46   <---------DAG2     --------->HSFB2a(2)                --------->RAP2.6(3)   <-------- ----->LBD16    <----------DOF2  <---------AHL20(2)                  --------->MYB52(1)    <--------- ----LBD16--------->TOE2(3)------>ZmHOX2a(1)                    <-----------GT1       --------->At4g35610   cgaaaattagatccttaacttttttattcctgtatttatagaaacggcccaattgttttgctgtatttacaaaacggcccaacttgtttgctgcttcact  18395200  Previous    Next  AGI:  At4g39610.1    Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G21990.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO71771.1); contains InterPro domain Protein of unknown function DUF617, plant (InterPro:IPR006460) Range:  from: 18393564    to: 18394739    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At4g39615.1    Description:  pre-tRNA. tRNA-Trp (anticodon: CCA) Range:  from: 18395022    to: 18395093    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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