Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100        ----------->HVH21     <---------MYB59    --------->At4g35610    <---------At4g35610    <---------bZIP60(2)    <---------O2    ----------->RAV1(2) ----------->HVH21 -----------HVH21 ------->ANAC55(2) --------TGA1a ------->TGA1a ------->O2 --------O2 --------ANAC58 --------ANAC55(2) --------ANAC58 ------TGA1a >GAMYB                          <---------ARR14(2)                                <<<<<<<<<TBF1 --MYB52(2)                      --------->ARR14(2)            ----------->HVH21<<<<<<<<<TBF1 --MYB55(2)          --------->ALFIN1                        --------->O2    <<<<<<<<<TBF1 ->DEAR3(2)   --------->ZAT14   ======================HOX2a_HOX2a  <---------ARR11(3) ->MYB46(3)   <---------ZAT14   <------ZmHOX2a(1)       <-----------GT1   <<<<<<<<<TBF1 ->RAV1(1)    <---------ZAT18 --------->MYB59  <------ZmHOX2a(2)   --------->ARR11(3)   cgcgtgacctgaccagtgctcaagagggggattaggaactggaattgggatcaaaagattaccacttgacatcttcttcttcttcttcttcttgccattt  18385100                                                      --------->GLK1(1)                                                      <---------GLK1(1)                                                     --------->ARR14(2)                                                     <---------ARR14(2)                                                    <------ZmHOX2a(1)                                                 <-----------RAV1(2)                                                ======================HOX2a_HOX2a                                                <------ZmHOX2a(2)                                           <-------TEIL                                          <---           >>>>>>>GRF7                   <---------ARR14(2)                                  <-------          <-----------RAV1(2)           <---------HSFB2a(1)                                 ---------         <---------MYB52(1)            <---------------AtSPL8                              <---------MYB52(1)        <-----------HVH21    --------->ZAT18   --------->ARR14(2)                          --------->ARR14(2) <---------TOE1(3)           <---------ZAT14   <---------ARR14(2)              --------->ANAC46------ <---------TOE2(3) --------->AtLEC2    <---------------AtSPL3  ------>ZmHOX2a(1)           <---------ARR14(2)   tttagggttctgtcaggtttcatgcagagagtgaaccagagagggttcggatcaggatttccctcctgtaaacacaaatacagacaactctcggttcggc  18385200                                           --------->CCA1(2)                                           <------ZmHOX2a(2)                                          --------->AGP1                                          >>>>>>>>>GATA-2                                          >>>>>>>>>GATA-1                                          >>>>>>>>>GATA-4                                          >>>>>>>>>GATA-3                              --------->MYB52(1)                             <---------ZAT14                             <---------WRKY12            <----------ID1                             <---------WRKY38(1)  <---------ARR11(3)                          <------------------SPL14--------->ARR11(3)               <---------ANAC46           --------->ARR11(3)    ----------->HVH21   <---------LBD16   <---------ARR11(3)                        --------->GLK1(2)  --------->YAB1   --------->DAG2    <------ZmHOX2a(1)   <----------ARF1        <-----------GT1  <---------ICU4  ---------->DOF2    ==============HOX2a_HOX2a            ----------->GT1 ------MYB59   <---------ANAC55(2)   =============HOX2a_HOX2a          --------->GLK1(2) --RAP2.6(2) <---------ANAC46--------->ZAT14------>ZmHOX2a(2)          <---------ARR14(2) >SPL7<---------At5g28300 --------->LBD16--------->GLK1(1)             --------->ARR14(2) >NtERF2   <-----------HVH21----------->HVH21 ---------->DOF2         <---------GLK1(2)         -----   ctaatagtgaccgtgtctcgtaaagctccggtgaacggaggagagatctaaagctcttggagacaagagagagaatcggataatacaatctggagactcg  18385300                                                    ----------->GT1                                                    --------->LBD16                                                  <------NtERF2                                                <---------ALFIN1                                               --------->ATERF1(1)                                               <------NtERF2                                      ---                                              <---------RAP2.3(1)                                <---                                              <---------DEAR3(2)                                 <---                                              <---------ATERF1(1)                               -----                                             <---------DEAR3(1)                                 -----                                            <------NtERF2                                       -----                                            --------->ATERF1(1)                                 <----                                           ------>NtERF2                                        <----                    --------->YAB1         <---------ATERF1(1)                                  -----             --------->ANAC58              <-----------HVH21                                    -----             --------->ANAC58             <---------DEAR3(1)                                    <----             --------->ANAC46             --------->DEAR3(1)                                 --------    --------->ARR11(3)               <---------ARR14(2)   --------->ARR11(3)                 --------    <---------ARR11(3)         --------->MYB52(1)------>NtERF2                        <---------HSFC1(2)    <---------ARR14(2)        ----------->TGA1------>NtERF2         <<<<<<<<<TBF1     <---------HSFB2a(1)    --------->ARR14(2)    <------ZmHOX2a(1)<---------SPL7 <---------ARR11(3) --------->MYB46(3)<-----  ----------->ARR10<---------ATHB12  --------->ARR14(2)  --------->GLK1(1) --------->MYB52(1)<------- ---->TOE1(2)--------->AtLEC2 ----------->HVH21<---------ABI4(2) <<<<<<<<<TBF1      <---------GLK1(2)   tgcgaagatacttacaagcaaatcatcaggaagtgacggtatcggcgtcggcaccggtgaaatcttcttcttcttcttaaccgatggattcttcgtcgac  18385400 ------>TGA2(2) --------HVH21 --------TGA1 ---->O2 ---->ANAC46 ---->TGA1a -----O2 -----TGA1a ---->bZIP60(1) ---->bZIP60(2)                                                       --------->WOX13(1) -----bZIP60(1)             --------->ARR11(3)                    --------->ANAC58          --------- ->DEAR3(1)          --------->LBD16                              --------->ANAC58          <-------- ->ETT(2) ------>ZmHOX2a(1)<<<<<<<<<<<<<<<<<LFY             --------->WRKY38(1)           --------->ANAC46 ------STF1        <---------LBD16      -------->HAHB4     <---------MYB52(1)          <---------ZAT14 --DEAR3(1)     ------>ZmHOX2a(1)      --------->ICU4     <-------GAMYB            <-----------GT1   gtcaccctcttcctcttcctctccggtgaagacattggctaattatcgagatgaaatcgccgttgagcaagtcaatctagggatttgacttcacttcact  18385500                                                                                        <---------AHL20(2)                        <----------DOF2                                                <---------AHL20(2)                       <---------ANAC58                 ------------>CBF         <---------ICU4          --------->HSFC1(1)             <---------ANAC58                   --------->AHL20(2)          <---------HSFB2a(2)            <---------ANAC46                 ----------->TBP  --------->YAB1       <---------ANAC58  <---------ANAC58  <------------CBF <---------AHL20(2) <---------YAB1        XXXXXXXXXXXXXXXXXXXX>MIR783  <---------YAB1       <---------AHL20(1)      <--- >ZAT14   <---------HSFC1(1)          *TSS   --------->ALFIN1   <---------ZAT18 <---------ATHB12 <--- -ZAT14   --------->HSFB2a(2)      <---------YAB1   --------->ICU4       --------->AHL20(1)      ----   gctatgagagttctcgaacgcgtttgctttactcgttcagattgcgagtgtgtgataattcaattgtgggcttaatatataaatcattttttaatgggcc  18385600                                                                         ------->TEIL                                                                      <---------YAB1                                 <---------AHL20(2)                 <---------ICU4                                <---------AHL20(2)                  --------->YAB1                    --------->YAB1                                 --------->ICU4        ------------>CBF--------->WOX13(1)                         <---------YAB1 ------------AGL15 <---------ATHB12             <---------ZAT14  --------->YAB1                    -- ---NtERF2       --------->WOX13(1)             --------->ZAT14  <---------ICU4                ------ -------->CBF  ------------>CBF --------->AHL20(2)              <---------ATHB12    --------->At4g35610   tcaatatagaaacaataaacaatcatccatcaaattaaatagcccaatactacacaaactctccaaatcatcatgaatcaaacagtagcagcaagaacat  18385700                                                                        <---------ANAC58            -                                                                        <---------bZIP60(2)       ---                                                                     <-----------RAV1(1)          ---                                                                  --------->ARR14(2)              ---                                                                  <---------ARR14(2)            <----                                                               <---------ANAC46                <-----                                                           <---------ARR14(2)                  ------                                                           --------->GLK1(2)                   <-----                                                           --------->ARR14(2)        --------->YAB1 -                     --------->ZAT6                       <---------CCA1(2)         <---------ATHB12-          <---------YAB1          --------->TOE2(3)       --------->GLK1(1)   <----------DOF2  ------ ----->TEIL--------->ATHB12    ----------->RAV1(1)     --------->LBD16  <---------ANAC46       ------ --------->AtSPL8   --------->GLK1(1)               <---------At5g28300 <---------ANAC58     <-------   gtaccaattcatatgatttgggaactctaagcacaacatcaaaccattcagtcttaccgcaaatctcgtatatgtcgtgcctttcaatcgtaatctccgc  18385800      --------->YAB1     <---------ATHB12   ------>MYB83   ------>MYB46(1) --------->AtMYB61                                                        <------NtERF2 -------->ANAC46                                                         ------>NtERF2 ------>ANAC58                                                           <---------RAP2.6(3) ------>ANAC46                                                          --------->ANAC46 ------>ANAC58                                                          --------->RAP2.3(3) -----ALFIN1                                       --------->DEAR3(1)   --------->RAP2.3(2) ----At4g35610                                     --------->ANAC46     --------->DEAR3(1) --->ZAT14                                         --------->RAP2.6(2)  --------->RAP2.6(2) ----ZAT18                                         ------->GAMYB       --------->RAP2.3(1) -------->ANAC58                               ---------->DOF2        <---------At4g35610 -------->ANAC58                       --------->ARR14(2)             --------->At4g35610 --->LBD16                             <---------ARR14(2)          <---------MYB52(1) --->At4g35610                    ---------->DOF2 --------->MYB46(3)--------->SPL7   --------->ANAC58 --LBD16                   --------->ANAC46   ---------->DOF2     <---------SPL7     --------->ANAC58   acaccaaatcatcttgttcttagagctagaaggcacaaaagtatcccataaaaccgccatcttctcaccgtaagccgccaagttaacacggctatagcat  18385900                                                                                <---------AHL20(2)                                                                                --------->AHL20(1)                                                                               --------->YAB1                                                                              <---------YAB1                                               <----------DOF2              <--------HAHB4   <-------                                        --------->ARR11(3)                  <---------ICU4   --------                                        <---------ARR11(3)                  --------->YAB1   <-------                   ------>MYB46(1)      --------->ARR14(2)                 <---------ATHB12  --------                   ------>MYB83         --------->ARR14(3)                 <---------YAB1    <-------                   -------->P           <-----------ARR10         <-----------GT1<---------YAB1           --------------->AtSPL3       --------->GLK1(2)        <-----------GT1--------->AHL20(2)         <-----------GT1      <----------DOF2 --------->TOE2(3) <---------AHL20(2)           --------     --------->ATHB12------->GAMYB      <---------ARR14(3)      --------->AHL20(2)--------->YAB1   agaaacttgattagccgttccaaccccatcaactttctccaaaatcttcctttatagtcataccatttaaactctctatcattataatagaacaatatat  18386000  Previous    Next  AGI:  At4g39570.1    Description:  kelch repeat-containing F-box family protein. Identical to F-box/Kelch-repeat protein At4g39570 [Arabidopsis Thaliana] (GB:Q9SVA1); similar to kelch repeat-containing F-box family protein [Arabidopsis thaliana] (TAIR:AT4G39550.1); similar to 117M18_27 [Brassica rapa] (GB:AAZ66946.1); contains InterPro domain Kelch repeat type 1 (InterPro:IPR006652); contains InterPro domain Kelch-type beta propeller (InterPro:IPR015915); contains InterPro domain Cyclin-like F-box (InterPro:IPR001810); contains InterPro domain Kelch related (InterPro:IPR013089); contains InterPro domain Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043) Range:  from: 18384094    to: 18385538    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At4g39580.1    Description:  kelch repeat-containing F-box family protein. Identical to F-box/Kelch-repeat protein At4g39580 [Arabidopsis Thaliana] (GB:Q9SVA0); similar to kelch repeat-containing F-box family protein [Arabidopsis thaliana] (TAIR:AT4G39550.1); similar to 117M18_27 [Brassica rapa] (GB:AAZ66946.1); contains InterPro domain Kelch repeat type 1 (InterPro:IPR006652); contains InterPro domain Kelch-type beta propeller (InterPro:IPR015915); contains InterPro domain Cyclin-like F-box (InterPro:IPR001810); contains InterPro domain Kelch related (InterPro:IPR013089); contains InterPro domain Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043) Range:  from: 18385678    to: 18386805    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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