Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                            --------->LBD16                          >>>>>>>>>>>>>>>>>LFY                         --------->ANAC58                         --------->ANAC46                         --------->ANAC58                        --------->MYB46(3)                        ------>ZmHOX2a(2)                   <---------WOX13(1)                <---------YAB1               <---------TOE2(3)              --------->YAB1      <---------ANAC46            <---------WOX13(1) <-----------RAV1(1)   ------->GAMYB          --------->ATHB12------>NtERF2             --------->MYB46(3)         <---------YAB1<------ZmHOX2a(2)           ------>MYB46(1)      <---------ZAT6  --------->ARR14(2)           ------>MYB83    <---------ANAC46  ------->TEIL----------->GT1 ----------->RAV1(1)   ============================HOX2a_HOX2a        --------->MYB52(1)                             <---   <------ZmHOX2a(1)  <---------ARR14(2)        --------->MYB46(3)                       <---------LBD16   ===========================HOX2a_HOX2a  --------->YAB1                      <------ZmHOX2a(1) <---   ctagaggagtgttcattgatgatggatccgccaatgttgtatatatcagaaccaacagcaacgagaccagagcaatgtacaggacgagaattggggattg  18383400                            <---------TOE1(3)                    ==============================================MYC_MYB      <------NtERF2 --------->O2     ------>NtERF2  <---------O2     <---------RAP2.6(3)    <---------TOE1(2)    --------->ATERF1(2)     <---------TOE2(3)    --------->ANAC46--------->TGA1a    <---------ATERF1(2)     <---------TOE2(2)     --------->TOE1(2)    --------->DEAR3(1)   <---------ANAC46        --------->MYB46(3)        <------ZmHOX2a(2)    --------->RAP2.6(2)  <---------ANAC58     --------->ZAT18---------->DOF2------>ZmHOX2a(2)    ----   <---------RAP2.6(2)   <---------ANAC58     <---------ZAT14<---------DOF5.7(2)                 <--- ------YAB1         <---------TGA1a     <------NtERF2     <-------GAMYB   <---------ARR14(2)     <--- ------TOE2(3)    <---------ALFIN1   <---------At4g35610 ----------->GT1  --------->ARR14(2)     ----   agattgccgccataacatgcccacttggcttaggttttcggcagagagtgaaccagcgagggttaaagtcagaagggatccctaagcacagatagagaca  18383500         ------>NtERF2        <---------PCF2                       --------->ANAC58       <---------RAP2.6(2)                 =========================================bZIP_DOF      --------->SPL7                       ---------->DOF2      --------->At4g35610               --------->LBD16                   <---------TGA1a     --------->ALFIN1            --------->DAG2                 --------->ARR11(3) ----->At4g35610                ---------->DOF2             ---------->DOF2 ------ZAT2                  <---------ANAC46--------->ANAC58   <---------ARR11(3)       <---------ANAC46 ------At4g35610             <---------ANAC55(2)            ========================bZIP_DOF ----->ZAT2       ----------->HVH21   <---------LBD16    <------ZmHOX2a(2)<---------O2  --------->MYB59   gctctctgtgcggcctaagagtgaccgagtctcgtaaagctccggtgaagcaatgagagatcgaaagctcttggagacgagagagagaattgggtagtcc  18383600                                                                        <---------DEAR3(2)                                                                        --------------------->WRI1                                                                        <---------MYB46(3)                                                                       <---------At1g77200    <------NtERF2                                                                       <---------DEAR3(1)   <--------                                                                      --------->ATERF1(1)<---------O2                                                                      <------NtERF2      <---------bZIP60(2)                                                                    --------->DEAR3(1)   --------->bZIP60(2)                                                                    <---------DEAR3(1)   --------->O2                                                                    <---------ANAC46     --------->DEAR3(1)                                                                    <---------O2         <---------bZIP60(1)                                                                   <------NtERF2         --------->bZIP60(1)                                                                   --------->RAP2.3(1)   <---------TGA1a                     <---------ANAC55(2)                           ------>NtERF2 <---------ARR14(2)                  <---------ARR14(2)                               --------->ATERF1(1)   --------->TGA1a                  --------->ARR14(2)               <---------ARR14(2)<-----------HVH21  --------->ATERF1(1)                 <------ZmHOX2a(1)                 --------->ARR11(3)------>NtERF2      <------NtERF2           ------>NtERF2                        --------->AHL20(2)<---------ATERF1(1)  ------>NtERF2          <---------DEAR3(1)                 ----------->GT1      <---------RAP2.3(1)  <---------ATERF1(1)          --------->LBD16                   ----------->GT1      <---------RAP2.3(2)  <---------DEAR3(1)         --------->ATERF1(1)     <---------ATHB12  --------->GLK1(2)--------->O2 --------->MYB52(1)        <---------LBD16<---------ICU4       <---------ZAT6       <---------DEAR3(1)   ----------->HVH21       <---------O2  --------->ANAC55(2)  ----------->GT1        <---------RAP2.6(2)  --------->DEAR3(1)       <---------TGA1a--------->ICU4    <------ZmHOX2a(1)       <---------LBD16  --------->ARR14(2)   aatctcgagacgcgggcgaggatacttattagcaaatcaacaggaagtgataaaatctgggtcgaatgcggcgtcggtgagagtatcggcgacgtcgtcg  18383700                                                      <---------ZAT14                                                      --------->ZAT14                                                      --------->At4g35610                                                      <---------At4g35610                                          --------->AHL20(2)                 --------->ARR14(2)                         ----------->HVH21<---------AHL20(2)                 <---------ARR14(2)                      <---------DEAR3(1) --------->AHL20(1)                  <---------ARR11(3)  *TSS                    --------->LBD16      <---------AHL20(2)                 <------ZmHOX2a(1)  <-----   <<<<<<<<<TBF1   --------->DEAR3(1)    <---------AHL20(1)           ---------->DOF2          ------ -DEAR3(1)        <---------LBD16        --------->AHL20(2)     ---------->DOF2           <---------YAB1   tcttcttcttcatcttcttcaccggcgatgacattggcgaaaataaaattatcgactgcagagaaccaaagtcaaagaggattttagggattttgactgc  18383800                                                      --------->AHL20(1)                              <---------At4g35610     --------->AHL20(2)                            <---------ANAC46          <---------AHL20(2)                            <---------ANAC58          <---------AHL20(1)        <---------AHL20(1)                            <---------ANAC58    --------->TOE2(3)               <---------AHL20(2)                         ---------->ID1    ------>ZmHOX2a(1)            ---------->DOF2                       <-----------RAV1(1)--------->TOE2(3) <---------YAB1      --------->AHL20(2) ----At4g35610       <----------DOF2      --------->TOE1(3)--------->TOE2(3)   --------->AHL20(2) >>> --->At4g35610     ------->TEIL   <---------ANAC46 --------->YAB1     <------NtERF2  ----------->GT1   taagccttatcgagcgtaatggactttgttgcttctgcgtttatccttcacattaataaattcttaatgggcctcaaagcattaaatttgttaatttgaa  18383900                                        <-------TEIL                                          -------                           <---------ANAC58                                                   <------                <---------ZAT14    --------->AHL20(2)                <---------------AtSPL3   -------                --------->ZAT14  <---------HSFB2a(2)           --------->ZAT6                 <------            <---------ICU4 <---------ANAC58           --------->AHL20(2)              <---------ICU4    --------->ZAT18     <---------GLK1(1)         ----------->GT1    --------->ZAT6   --------->ATHB12 >>>>>>TBF1--------->AHL20(2)    --------->HSFB2a(2)  <---------AHL20(2)             <---------YAB1   gaagaatgcacaattcattacactggatttcgtttctataaatacatttgaaaagtttaatttcaactctaacagtactgctactgcatcattggatgat  18384000                                                                                                -----       <-------TEIL                                                                         ---------   --------------->AtSPL3                       <----------DOF2                             <--------  --------->MYB52(1)                         <-----------GT1                               ---------- -->HSFC1(2)                                <-----------GT1 --------->AtMYB61            <---------At4g35610 ---HSFC1(2)                           --------->ICU4       ------->GAMYB                --------->At4g35610 -->HSFB2a(1)                       ---------->DOF2        --------->MYB46(3)         <---------ZAT14 ---HSFB2a(1)                      --------->YAB1   <----------DOF2              ----------->HVH21  -   tccataacgtacaatgacatgagacatacttgcacaatgaaagtattaaactttcttttcaaccaaaacagtgtttcataggtctgactgtagcagcaga  18384100         ------->GAMYB        --------->MYB46(3)      --------->MYB52(1)   <---------At4g35610                                               --------->ANAC46   --------->At4g35610                                               --------->ANAC58 ----->DOF2                                                          --------->ANAC58 >At4g35610                                                   ---------->DOF2<---------ATHB12 -At4g35610                                              ----------->GT1     <<<<<<<<<ARR1 ->RAV1(1)   ---------->DOF2                             --------->At4g35610 <<<<<<<<<ARR2--------->ICU4 --------->DOF2<---------TOE2(3)                  --------->YAB1<----------ID1--------->YAB1   aagaaagctaaccatcaaaggtttacaagtgaaacaatgtcaatagcataagtcataagagctaaaaagacaagacacaatcatacaacaaaatgatcaa  18384200                    <-----------GT1                 <---------GLK1(2)                                                              -----              <---------TOE2(3)                    --------->At5g28300                          -----             ---------->DOF2                       --------->DOF5.7(2)                   <---------ARR14(2)            --------->AHL20(2)                    ----------->GT1                        --------->ARR14(2)      --------->ANAC46                         --------->MYB52(1)                       <------ZmHOX2a(1)    --------->MYB46(3) <---------ALFIN1   --------->YAB1                        ----------->HVH21    <---------MYB52(2)--------->ANAC46 --------->WOX13(1)                     <---------At4g35610  --------->ANAC46 <-------TEIL     <-----------HVH21    --------->At4g35610  --------->At4g35610   atacccacaaaccattaaagattcaccacattcaagtctgtcattcatcaaacggtaacagctagagcatgttcaaactcatatgacacaggaactgtaa  18384300  Previous    Next  AGI:  At4g39560.1    Description:  kelch repeat-containing F-box family protein. Identical to F-box/Kelch-repeat protein At4g39560 [Arabidopsis Thaliana] (GB:Q67XN8;GB:Q9SVA2); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G49000.2); similar to 117M18_27 [Brassica rapa] (GB:AAZ66946.1); contains InterPro domain Kelch repeat type 1 (InterPro:IPR006652); contains InterPro domain Kelch-type beta propeller (InterPro:IPR015915); contains InterPro domain Cyclin-like F-box (InterPro:IPR001810); contains InterPro domain Calcium-binding EF-hand; (InterPro:IPR002048); contains InterPro domain Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043) Range:  from: 18382285    to: 18383797    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At4g39570.1    Description:  kelch repeat-containing F-box family protein. Identical to F-box/Kelch-repeat protein At4g39570 [Arabidopsis Thaliana] (GB:Q9SVA1); similar to kelch repeat-containing F-box family protein [Arabidopsis thaliana] (TAIR:AT4G39550.1); similar to 117M18_27 [Brassica rapa] (GB:AAZ66946.1); contains InterPro domain Kelch repeat type 1 (InterPro:IPR006652); contains InterPro domain Kelch-type beta propeller (InterPro:IPR015915); contains InterPro domain Cyclin-like F-box (InterPro:IPR001810); contains InterPro domain Kelch related (InterPro:IPR013089); contains InterPro domain Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043) Range:  from: 18384094    to: 18385538    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version