Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                             <---------ARR11(3)                                            <------ZmHOX2a(1)                              --------->ARR11(3)                  ------->GAMYB        --------->ANAC58                                ----------->HVH21                ------>MYB46(1)        --------->ANAC58                              <---------O2              --------->AtMYB61        --------->ANAC46                              --------->TGA1a             --------->DEAR3(2)       --------->SPL7                                 <---------TGA1a             --------->MYB46(3)       --------->ZAT14                                --------->O2    --------->ARR11(3)        ----------->HVH21                                     ------>MYB46(1)    <---------ARR11(3)        <---------ETT(1)                        ------>NtERF2 ------>MYB83  <<< --------REM1(1)------>MYB83 --------->DEAR3(2)          <---------ARR14(2)        <---------ALFIN1<x -------RAV1(1)--------->MYB52(1)     <---------ZAT14    --------->ARR14(2)   --------->KAN4(2) <xxxx   gttgtagatattagaaccaacggcaacgagacccgaccagtacgcaggacgagaatggagaactgggattgcagccagaacatacccacttgacatcttc  18381500                                                                                   <-------GAMYB          <<<<<<<<<TBF1        <---------bZIP60(1)                           ------>MYB46(1)       <<<<<<<<<TBF1           --------->GLK1(1)                             ------>MYB83     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                  --------->MYB52(1)    <<<<<<<<<TBF1  <<<<<<<<<TBF1  --------->ATHB12    <------MYB83         --------->TOE2(2)  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)     <---------ZAT6                 --------->TOE1(2) <<<<<<<<<TBF1  <<<<<<<<<TBF1  --------->bZIP60(1)    <------MYB46(1)     --------->MYB46(3)   <----- <<<<<<TBF1  <<<<<<<<<TBF1     <---------TGA2(1)     <---------TOE2(3)    --------->DEAR3(2)   <----- xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)  <---------MYB46(3)               <---------ZAT14         ------ xxxxxxxxxxxxxxxxxxxsmallRNA(se3)<---------YAB1      --------->MYB59   --------->ZAT18        <------   ttcttcttcttcttcttcttcttcttctcagtgatatcattggttagagttcgattaggtttcagacagagagtgaaccaacgagggttagggtcagaat  18381600                                                                             --------->ANAC58                                                                             --------->ANAC58                                                                            --------->WOX13(1)                                                                 <------ZmHOX2a(2)                                                <---------ARR14(2)       --------->ANAC58                                                --------->ARR14(2)    <---------REM1(1)                                               --------->GLK1(1) --------->CCA1(2)                                               <---------GLK1(1)--------->ARR14(2)                                         ------>MYB83           --------->AGP1                                         --------->MYB52(1)     <---------ARR11(3)                                         ------>MYB46(1)        --------->ARR11(3)                                        ----------->HVH21       <---------AGP1<---------ATHB12                                       <---------MYB111(1)      <---------ARR14(2)     ------>ZmHOX2a(1)                 <---------MYB46(2)      <---------GLK1(1)            <-------- ----ARR11(3)                          <---------MYB59        ----------->ARR10             --------- ------ARR10                        <---------PCF2------>ZmHOX2a(2)  <---------------------WRI1 --->GLK1(2)                      <---------ZAT18<------ZmHOX2a(2)------>ZmHOX2a(2)  --------->At4g35610 ---GLK1(2)        xxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) <---------ANAC46  --------->ANAC58  <---------At4g35610   ctttctcctgtaaacacacatagagacaactctcagtgcgacctaacagagatcgggtcttgtagagatctggtgaagcaatcaaggagcggaagctctt  18381700                                                                                                    <                                                                                                    <                                                                                                    -                                                                                                    <                                                                                                   <-                                                                                                   --                                                                                                   <-                                                                                                   <-                                                                                                   --                                                                                                  <--                                                                                                  ---                                                                                                  ---                                                                                                 <---                                                --------->ZAT2                                   <---                                                --------->At4g35610                             <----                                                <---------At4g35610                             <----                                                <---------ZAT2                <---------ARR14(2)<----                 <------MYB83                <---------At4g35610              --------->ARR14(2)<----                 <---------ANAC46     <-------MYC2                           <------ZmHOX2a(1)  <----                 ----------->GT1      <-------MYC3                         <---------TOE1(3)    <----                 <------MYB46(1)      ------->MYC2--------->ZAT14       ----------->HVH21      <-----       <------ZmHOX2a(1)              ------->MYC3<---------ZAT18 <---------HSFB2a(2)  <---------MYB46(3)     <---------TOE2(3)               <---------ANAC58             --------->HSFB2a(2) <---------AtMYB61 -ARR11(3)      <---------MYB46(3)   <---------ANAC46           ----------->RAV1(2)   <--------P<---- >ARR11(3)      --------->MYB59      <---------ANAC58           --------->At4g35610  <-------GAMYB---   ggagactaaggagagagttgggtaatacaatctcgagacgcgtgctaagcagctcactactaaatcatctggaagtgaaggatttggggttgtcgattgc  18381800     <---------DEAR3(1)    <------NtERF2   <---------RAP2.3(1)   ------>NtERF2  <---------At1g77200  <---------DEAR3(1)  --------->DEAR3(1) <------NtERF2 --------->ATERF1(1) ---------SPL7 -----------HVH21 ----->NtERF2 ---------ATERF1(1) --------DEAR3(1) ------->DEAR3(1) --------ANAC46 --------O2 ------->O2 ----NtERF2 ------>RAP2.3(1)                                                                                   < ------>ATERF1(1)                           --------->ANAC58                                     ---- ------RRTF1(1)                             --------->ANAC58                                  <------ ------RAP2.3(1)                           --------->SPL7                                     ------- -----RAP2.3(3)                           ------>NtERF2                  --------->MYB46(3)   <------ -----RAP2.6(2)                           <---------ATERF1(1)       XXXXXXXXXXXXXXXXXXXX>MIR162A/B <- -----DEAR3(1)                         <---------LBD16           <------NtERF2                <------ -----RRTF1(3)                         --------->LBD16         <---------DEAR3(1)             ------- -----RRTF1(2)                        <---------LBD16     --------->ARR14(2)                 -------- -----ANAC46<----------DOF2           <---------ANAC46    <---------ARR14(2)              ----------- ----LBD16 <---------ANAC58          <---------LBD16 <---------ANAC46   ------->TEIL     <---------ETT(1) -----RAP2.3(2)    ---------->ID1<----------DOF2     <---------ANAC58   -------->P  <----------DOF2*TSS --->NtERF2<---------ANAC58 ------>ZmHOX2a(1)        <---------ANAC58<------ZmHOX2a(2)   --------->ANAC46   ggcgtcggcgatggcttcttcgtcgtcttcctcttcttttccggggacgacattggcgagtataggcgtcgatcaacctctgtattcttttccgacagca  18381900    ---------->DOF2 ------ZmHOX2a(1)                                     --------->MYB46(3) ----->At4g35610                                 <----------DOF2 ---At4g35610                              <-------MYC3 -->At4g35610                              ------->MYC3             <---------ANAC58 ---ZAT14                        --------->MYB52(1)  <---------At5g28300         --------->LBD16 ---------ID1               <---------ZAT14------->MYC2             <---------ANAC58 ---ZAT2                    --------->ZAT14<-------MYC2             <---------ANAC46 -->ZAT2                  --------->ANAC46<---------ANAC46        <---------ANAC58 --->RAV1(1)           <---------ZAT14    <---------ANAC58        <---------ANAC46   <---------ARR11(3) >RAV1(1)          <-----------GT1        <---------ANAC58        <---------ANAC58  <---------CCA1(2)   gaggacaaaagttaggggttttgacttcacttcactaccgaagcgcgtgtgctttaaccgctaaaatttcgcgtgagaatttccacaaatcttataaggg  18382000                                                                        <---------ICU4                                                                        --------->ATHB12                                                  --------->ARR11(3)    --------->ATHB51                                                  <---------ARR11(3)   --------->ICU4                                     ---------->DOF2--------->TOE2(3)  <---------YAB1           --------->HSFB2a(2)<------MYB83       <---------CCA1(2)   --------->YAB1         <--------           <---------HSFB2a(2)<------MYB46(1)--------->AHL20(2)     <---------YAB1      <-------MYC3     --------->ZAT6  <---------AHL20(2)--------->ANAC58           <---------CCA1(2)     ------->MYC3   <-----------GT1   --------->AHL20(2)--------->ANAC58        <------NtERF2<---------AHL20(2)  <----   ctaattaacacttctaggcccaatttataagttggtctcaaaagccattatatatctcaatgggcctcatatcattatttgatttcatcacatgctttct  18382100                                                                                  --------->MYB52(1)                                                         --------->TOE2(3)        <-----------GT1 --DOF2                                       <---------GLK1(2)               ------->TEIL       <--- ------DOF2   ---------->DOF2    ----------->HVH21       --------->YAB1   ------->TEIL    ---------->DOF2   ttcaagactgaggcactaatgcaacttgatacgatgcgaccatggatagaatgtctcattcttaactcttaacatgtatgtatataacagaataaagttt  18382200                                                  <---------AHL20(2)                                                 <---------AHL20(2)                          ----------->GT1        --------->AHL20(2)                          --------->ALFIN1   <---------YAB1     <-----------GT1                        <---------ANAC58     --------->ICU4<---------AHL20(2)                       <         ---------->DOF2<---------ANAC58 <-------MYC3  <---------AHL20(2)              <---------CCA1(2) ---------->DOF2<-------MYC3             ------->MYC3 <---------AHL20(2)     --------->YAB1      <--- ------ANAC46   ------->MYC3      ---------->DOF2<---------AHL20(1)       ----------->GT1     <------   tgtgaaagaaaaaaagcatgtgataagcgtgtgaaaaaaagcatgtgataattttttttatttttttcacaaaatactgtaataagcgtttatcttcttt  18382300                                             <------MYB46(1)                                             <------MYB83                                        <---------ICU4                                        <--------HAHB4                       --------->ANAC58                                        --------->ATHB12            --------->ANAC58                                       <---------YAB1           --------->ANAC46                                       --------->ICU4           --------->ANAC58                                     <---------ICU4             --------->ANAC58---------->DOF2                                     --------->YAB1        <---------YAB1  ---------->DOF2            <---------AHL20(2)      --------->ICU4       ----------->GT1--------->ANAC58      --------->YAB1           --------->ANAC46        >>>>>>>>>ARR2--------->ANAC46 ---------ANAC46               --------->ANAC58        >>>>>>>>>ARR1--------->ANAC58 ------AtMYB61                 --------->ANAC58      <---------TOE2(3)  --------->ANAC58 ----DOF2  --------->AHL20(2)---------->DOF2 ----------->GT1  --------->ICU4 --------->ANAC58      --   tggtgtgataatattaaatgaaaacacacataaaagccataatcatttggtttataagattgtaataagcaagcaagcaaagcaaagcctttgcaaacga  18382400  Previous    Next  AGI:  At4g39550.1    Description:  kelch repeat-containing F-box family protein. Identical to F-box/Kelch-repeat protein At4g39550 [Arabidopsis Thaliana] (GB:Q9SVA3); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G49000.2); similar to 117M18_27 [Brassica rapa] (GB:AAZ66946.1); contains InterPro domain Kelch repeat type 1 (InterPro:IPR006652); contains InterPro domain Kelch-type beta propeller (InterPro:IPR015915); contains InterPro domain Cyclin-like F-box (InterPro:IPR001810); contains InterPro domain Kelch related (InterPro:IPR013089); contains InterPro domain Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043) Range:  from: 18380520    to: 18381899    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At4g39560.1    Description:  kelch repeat-containing F-box family protein. Identical to F-box/Kelch-repeat protein At4g39560 [Arabidopsis Thaliana] (GB:Q67XN8;GB:Q9SVA2); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G49000.2); similar to 117M18_27 [Brassica rapa] (GB:AAZ66946.1); contains InterPro domain Kelch repeat type 1 (InterPro:IPR006652); contains InterPro domain Kelch-type beta propeller (InterPro:IPR015915); contains InterPro domain Cyclin-like F-box (InterPro:IPR001810); contains InterPro domain Calcium-binding EF-hand; (InterPro:IPR002048); contains InterPro domain Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043) Range:  from: 18382285    to: 18383797    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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