Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                      <----------DOF2                                  --------------->AGL15                       <---------HSFC1(1)                       ------>ZmHOX2a(1)                       <---------HSFB2a(2)                       --------->HSFB2a(2)                                           --------->ATHB12                       --------->HSFC1(1) ----------->HVH21                         <---------YAB1                      --------------------->WRI1    ----------->GT1              <---------AHL20(2)               <---------AHL20(1) <---------------AGL15     <---------YAB1    <---------ARR11(3)               --------->ARR11(3)<-----------------AGL2   --------->YAB1      <---------GLK1(2)               --------->AHL20(1)<-----------------AGL1   <---------ICU4--------->ARR11(3)        ---               <---------ARR11(3)<-----------------AGL3  --------->ICU4<---------CCA1(2)  <---------TOE2(3)   tatttttgtaagacaaatatttttcctagaaaatttctctttatgggacagagggagtaattatgttttatatatatctagattttatgattaagtttaa  18377900                                                                                                  ---                                                                                                  <--                                                                                                  <--                                                                 --------->ATHB12                 ---                               <---------ZAT14                  --------->ICU4            --------->ATHB12                          <---------MYB52(1)            <---------ARR14(2)               <------ZmHOX2a(2)                         --------->TOE2(3)              --------->GLK1(2)               <---------ARR11(3)        <---------GLK1(2)--------->TOE1(3)              --------->ARR14(2)              --------->ARR11(3)        <---------ARR11(3)------>ZmHOX2a(1)        --------->AtLEC2                 --------->YAB1<-- ------>YAB1XXXXXXXXXXXXXXXXXXXX>MIR426   --------->GLK1(2)    <<<<<<<<<<<<<<<<<LFY<---------ATHB12   taagaagacagattttagaaatttcatccttagtttacagagaaattctatccattcaaatctgtaaacattggaaagaatacgaatcaagatcatttga  18378000                                       --------->GLK1(1)                                       <---------GLK1(1)                                      <---------ARR11(3)                                      --------->ARR11(3)               --------->ZAT6                                     --------->HSFB2a(1)         <----------DOF2                                  <------ZmHOX2a(1)      --------->ANAC55(2)                  -------                            --------->YAB1               <---------ANAC55(2)                  <------ ------>ARR14(2)           <---------YAB1                --------->ANAC55(1)                  <------ -------ARR14(2)         <---------CCA1(2)               --------->ANAC58        --------->AHL20(2) -------ARR11(3)       --------->ANAC55(2)               --------->ANAC46        <---------AHL20(2) ------>ARR11(3)       <---------ANAC55(2)--------->TOE2(3)      <---------DAG2  <---------AHL20(1) -------GLK1(2)    <-----------HVH21 <---------HSFB2a(1) --------->ANAC58<---------MYB52(2)<---------   gatactcacaatatgaacagttgtcacatatcataaggaagatttcttaattttaaaacacgttacactttttccactaacattttatttggacttttaa  18378100                            -------->HAHB4                                        ------>MYB83                            -------->ATHB1                                        ------>MYB46(1)                            --------->ATHB51                                      -------->P                            <---------ICU4                                       --------->MYB55(1)                            <---------AHL20(2)                                  <---------MYB46(2)                            --------->ATHB12                                    --------->AtMYB61                           <---------ATHB51                                     <---------MYB111(2)                        --------->AHL20(2)                                      <---------MYB55(2)                        <---------AHL20(2)                                      <---------MYB111(1)                      --------->ANAC55(2)                                       --------->DEAR3(1)                      <---------ANAC55(2)                                       --------->MYB46(3)       --------->ARR11(3)  --------->ICU4                                       <---------ALFIN1 -->AHL20(2)    --------->AHL20(2)                                             --------->MYB46(3) ---AHL20(2)    <---------AHL20(2)<---------ANAC58                 <---------HSFB2a(2)    --------->TOE2(3) ---YAB1     --------->WOX13(1)   <---------ANAC58     --------->MYB52(1)    <-----------GT1       <- -DOF2 <---------ARR11(3)  <---------YAB1       ----------->GT1    --------->HSFB2a(2) <---------ALFIN1   ttgtcttattatcttcaattaaatacttaattattgacttggcataaatttagtaattaacagatagttttggaaattttcaccaacccctacgttataa  18378200                                                                                                    -                                                                                                    <                                                                                                    -                                                                                                    <                                                                                                   <-                                                                                                   <-                                                                                                   --                                                                                                  ---                                                                                                  <--                                                                                                  ---                                                                                                  ---                                                                                                 ----                                                                                                 ----                                                                                                -----                                                                                                <----                                                                                                -----                                                                                               <-----                                                                                              <------                                                                                            <--------                                                                                           --------->ZAT2                                                                                           <---------ZAT2                           <-----------------AGL2                                         --------->ANAC58                <---------YAB1                 --------->DAG2                       -----------------               <---------AHL20(2)         --------->YAB1                          ------>NtERF2------              --------->YAB1         ------------>CBF                      <---------GLK1(2)--------- ------TEIL <---------GLK1(2)   <---------ICU4---------->DOF2          ---------->DOF2    --------->ANAC58   attcgttttattcagattataattctaaaactaattttggccaataagaaaagcgtaagttaagagagagagagaaagagtctctgcctctcaagctccg  18378300   <------NtERF2   ----------->GT1 <---------DEAR3(1) <---------ANAC46 -------->ALFIN1 ---------MYB52(1) -------->ATERF1(1) ------NtERF2 ----------HVH21 --------SPL7 ---->NtERF2 ------>RAP2.3(3) -------ATERF1(2) ------>ATERF1(2) ------>DEAR3(1) ----->ATERF1(1) ----->RAP2.3(1) ->NtERF2 -----ATERF1(1) ---->LBD16 ----ALFIN1                                                                                        <- ---LBD16---------->DOF2                                  <---------WOX13(1)                --------- -ARR14(2)                                              --------->ATHB12                  ------>ZmHOX2a(1) ---->WRI1  ----------->GT1 *TSS                       --------->ICU4                --------->KAN4(2) --->DEAR3(1)       --------->TOE2(3)               <---------AtLEC2   --------->GLK1(2) --------->TOE2(3) >ARR14(2) --------->DAG2<-----------GT1        <----------DOF2       <---------GLK1(2)  --------->TOE1(3)   ccgtcggggaaaaaaggtgaaacctttatacattctccgatttcatttgtctttgcattgattgtttatgcagaatttggatttgtttattccttaaaac  18378400                                                                                                 <---                                                                                                <----                                                                                                <----                         <---------HSFB2a(1)                                                    <----                         <---------HSFC1(2)                                              <---------YAB1            <--------HAHB4                                                              --------->ARR11(3)            <---------ICU4                                                              <---------ARR11(3)            --------->YAB1                 <---------At4g35610                         --------->YAB1           <---------YAB1--------->HSFC1(2)--------->At4g35610    ---------->DOF2     <---------YAB1   <----------DOF2   --------->ANAC46  <-----------HVH21      ======================================= ---------DOF2<---------YAB1      ---------->DOF2             --------------->AGL15  <---------TOE2(3) ->DOF2 <---------YAB1   --------->HSFB2a(1)            <---------AHL20(2)          --------->YAB1   tctttcttttactattattactcacgaagtttcttcaaaagtgtcatctgcaattagtttaattctcagaaaggaaatggttccattgatgatatttggc  18378500                                                                 <---------ZAT6                                                            --------->At4g35610                 -----                                                            <---------At4g35610                ------                                                 --------->GLK1(2)                      <---------ICU4                    <---------At4g35610          <---------ARR14(2)                    <---------YAB1 ----GAMYB          --------->At4g35610          --------->ARR14(2) --------->ZAT14  --------->YAB1 -----ANAC46   <---------ARR11(3)             <---------------AGL15 <---------ZAT14 <---------------AGL15 -----ANAC58   --------->ARR11(3)             ======================================================MADS_MADS -----ANAC58   <---------GLK1(2)      <---------ZAT18    <---------At4g35610  --------------->AtSPL8 =============================================================MADS_MADS       --------------->AtSPL3   gttgaagatgagtaatagattttgctgaattcatgtactgtgcatttgcagaatatggaagcagctactgttcagaggtttcagtactcatcatggaatg  18378600                          <---------MYB46(3)                       <---------O2                       <---------ANAC46                       --------->O2 ----------->GT1                   --------->HSFB2a(1)                                               <----------DOF2                   --------->HSFC1(2)                           --------->CCA1(2)   <---------ANAC58                   <---------HSFC1(2)                        ----------->GT1        <---------ANAC46                   <---------HSFB2a(1)                     <------ZmHOX2a(1)        <---------ANAC58 ---->ATHB12      --------->ANAC58  <---------ANAC46     <---------TOE1(3)     <---------REM1(1) --->ICU4         --------->ANAC58 <---------TOE2(3)     <---------TOE2(3)     <---------MYB46(3)  --   atttgagaaattttgaagggaagcctcgtggttctctgaggtataatacacagcgaattaaggaagataaaaggtttagagttgttgctttaactcttga  18378700                                                      --------->ANAC58                                                      --------->ANAC58                                                 <-------TEIL                                                <---------ARR11(3)                                      --------->GLK1(1)                                      <---------GLK1(1)                                     <---------ARR11(3)   --------->DAG2                                     --------->ARR11(3)  ---------->DOF2                 <---------ANAC46                              <---------YAB1   <---------GLK1(2)                    <<<<<<<<<RAP2.2                      ============================HOX2a_HOX2a                      <---------TOE2(3)         <------ZmHOX2a(2) --------->GLK1(2)<-----------RAV1(2)              <---------YAB1 -------->DOF2        <------ZmHOX2a(2)    ------>ZmHOX2a(1)      ------->TEIL     <---------YAB1 <--   caaaagaagggatcatcgacttagatcagtttctgataagaactcctcaggttcttacgaaaagcatgaatctttcgatatgatttagattgtgtctatt  18378800  Previous    Next  AGI:  At4g39540.1    Description:  shikimate kinase family protein. similar to shikimate kinase, putative [Arabidopsis thaliana] (TAIR:AT2G21940.1); similar to shikimate kinase, putative [Arabidopsis thaliana] (TAIR:AT2G21940.5); similar to shikimate kinase, putative [Arabidopsis thaliana] (TAIR:AT2G21940.2); similar to putative shikimate kinase [Fagus sylvatica] (GB:ABA54868.1); contains InterPro domain Shikimate kinase; (InterPro:IPR000623) Range:  from: 18378328    to: 18380411    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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