Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                --------->ANAC58                                              --------->ANAC58                                              --------->MYB46(3)                                            <---------ALFIN1                                           --------->DEAR3(1)                                         ------->GAMYB                                        --------->ANAC58                                      <------                                        --------->DEAR3(1)                                --------->ARR11(3)                                        --------->ANAC58                                  <---------AHL20(1)          --------->ANAC58          --------->MYB46(3)                                    --------->AHL20(1)          --------->ANAC58          <---------MYB55(2)                                    <---------ARR11(3) ----->MYB46(1)                    ------>MYB83                                           <---------AHL20(2) ----->MYB83                       ------>MYB46(1)                --------->ANAC58        --------->AHL20(2) --------ALFIN1  <----------DOF2 --------->AtMYB61                --------->ANAC58       --------->AHL20(2)   cccactcttgacaagaaaactttgtagttgaaacaccatccaacgcccacgaccatctaagcctgagcaagcttgaataaaactcgacaaaatatattca  18376800                                                                           <---------At4g35610                                                                           <---------ZAT2                                                   ------>ZmHOX2a(1)       --------->ZAT2                                              <---------GLK1(2)            --------->At4g35610                      --------->LBD16        --------->HSFB2a(1)    <-------GAMYB                     --------->HSFB2a(2)    <---------ATHB12       <---------MYB46(3)                     <---------HSFB2a(2) --------->AtMYB61        <---------YAB1               ------                    <---------LBD16  --------->MYB46(3)        <---------ATHB12                ------ -TEIL  <----------DOF2  --------->GLK1(1)---------->DOF2      --------->ICU4                  ------   ttcggactgtcttttctagttctccagaactctaagaaaaccaccaaagattcctcataaatcccatgatggttgcaagctgaaaccatggtagaccaag  18376900                                                                                                   <-                                                                                                 ----                                                                                                 ----                                                                                                 <---                                                                                                 <---                                                                                                 <---                                                                                                <----                                                                                              -------                                                                                              <------                                                                                              <------                                                                                              -------                                                                                              <------                                      <-------TEIL                                            -------                                   <---------ANAC55(2)                                        <------                                   --------->ANAC55(2)      <---------HSFB2a(2)               -------                                   <---------ANAC46         --------->HSFB2a(2)              <-------TEIL                                   <---------ANAC58     --------->ZAT2                       <-------                                   <---------ANAC58     <---------At4g35610                 ---------                                   <---------ANAC55(1)  --------->At4g35610                 ---------                               <---------DAG2           <---------ZAT2                     --------->ARR14(2)                            <---------ALFIN1          --------->MYB46(3)                   <---------ARR14(2)                       <---------HSFC1(1)             <---------ALFIN1                   ----------->ARR10 --->ANAC58            <---------HSFB2a(2)       --------->SPL7                  -------------------- --->ANAC46            --------->HSFB2a(2)    --------->AtMYB61                  <-----------RAV1(1) --->ANAC58            --------->HSFC1(1) XXXXXXXXXXXXXXXXXXXX>MIR844*      --------->YAB1 --------->ARR11(1)   aaactaagtttctctcaggcattttctcgaacaccttacgtgcataaaccataccaccagctctcgaatacaaattgatcaaaatgttgctaagatacgt  18377000                                                                          --------->ZAT2                                                                          --------->At4g35610 --------MYB59                                                            <---------ZAT2 ----->ARR14(2)                                                           <---------At4g35610 --->TEIL                                                             --------->ANAC46 --------ARR10                                                        --------->ANAC58 ------ARR11(1)                                                       --------->ANAC58 ------ARR14(2)                                                      ------->TEIL -----CCA1(2)                                                      <---------SPL7 -->ANAC55(1)                                                     --------->ANAC58 ---ANAC55(1)                                                     --------->ANAC58 ---ANAC58                                                     ----------->HVH21 -->ANAC58                                                   ----------->RAV1(2)                   <- ---ANAC58                                                   --------->At4g35610                  --- -->ANAC58  <------NtERF2                                    <---------At4g35610                 ---- ---ANAC55(2)          --------->At4g35610               ----------------------->TaNAC69(2) --------- -->ANAC55(2)        --------->YAB1                      --------->ARR11(3)                 <-------- ----------------TaNAC69(2)                         =====================RAV           --------->ANAC58 >ARR14(1)--------->PCF5 ----------->HVH21          ----------->RAV1(1)  ------->TEIL  --------->ANAC58 >CCA1(2)------>NtERF2--------->GLK1(2)     --------->YAB1<------ZmHOX2a(2)         <---------------- --->TaNAC69(2) <---------ATHB12           <---------YAB1<---------ARR11(3)        --------->CCA1(2)-   atctaactcgaggccccaaacaataatctgaccatgaactacattttgataatgcaacagatcatctgacgcacgcagctgcaagagacgagcaaattcg  18377100         <---------ARR14(2)         --------->ARR14(2)         <---------GLK1(2)      --------->TOE1(1)     ------>ZmHOX2a(1)       <---------ARR11(3)     <---------LBD16         --------->GLK1(2)     --------->LBD16         --------->ARR11(3) -----NtERF2                 <-----------ARR10 --->NtERF2      <---------ANAC46                              --------->At4g35610 ----->ANAC46    --------->YAB1   <---------ANAC46          <---------At4g35610                  ---- >ARR14(2)    ------>ZmHOX2a(1)--------->TOE2(2)            --------->At4g35610                  <--- -ARR14(2)--------->GLK1(1)  --------->ARR14(2)          ---------->DOF2                    --------- -------TaNAC69(2)           <---------ARR14(2)  ---------->DOF2               ----------->GT1   <--- -------->DEAR3(1)      ----------->GT1        <---------HSFB2a(2)            <------ZmHOX2a(1)  <---   cgccttcctcggattcctatcgtagaaggaaaatctgcgtttacaaattccaaaagacttgaagcagaagaagatgaagaggagtataaacgtatggttt  18377200            ----------->RAV1(1)            ------>NtERF2        --------->ANAC58                                        <---------ANAC46        --------->ANAC46                                     ----------->HVH21    <---------DAG2                                       <---------ZAT14    <----------DOF2    <---------GLK1(2)                 --------->ZAT2 ----------------->WRI1<---------ANAC58                  <---------ZAT2                   --------->YAB1 ------ANAC46          <---------ANAC58                 --------->ALFIN1          <---------MYB52(1) -->GT1 --------->ANAC58            ------>ZmHOX2a(1)  --------->ZAT18           <---------RAP2.6(3) ------ANAC58  ------->GAMYB      ----------->RAV1(2) <---------ANAC58          <---------ANAC46 ------ANAC58 --------->MYB46(3) ------>ZmHOX2a(1)    <---------ANAC58        ------>NtERF2   cttggactttacgccaacagcgatagcttctcatcctcctgagtgagaagaacagagcgtgctgtgacgaataaacatgctgccgttttttgtcataagc  18377300                                                                           --------->ARR11(3)                                                                           <---------ARR11(3)                                                                <---------At4g35610                                                                <---------ZAT2                                                                --------->At4g35610                                                                <---------TGA1a                                                                --------->O2                                                           <----------ID1 --------->YAB1                                                    --------->TOE2(3)    <---------YAB1                                                  <---------ATHB12     <---------At4g35610                                                 ------>MYB83   --------->ZAT2                                 -------->P      ------>MYB46(1)<---------O2 <------------CBF                                 =========================================MYC_MYB                           --------->RAP2.6(3) <---------MYB111(2)   <---------ANAC46                    <---------AHL20(2)         <---------MYB46(2)   <---------At4g35610                    --------->AHL20(2)         --------->MYB46(3)   <------NtERF2                   --------->AHL20(2)          <---------MYB111(1) <---------MYB46(3)             <--       --------->ALFIN1   --------->MYB52(1)   <---------MYB59<-----------RAV1(2)         <---------TOE2(3) ---------->DOF2   <---------ATHB12 ----------->GT1--------->YAB1 --------->ALFIN1  --------->ATHB12<   gaagaaagggtgatggaactaataaataaaacggcaaccagttatactaccaaacatcaaaacgacaggtggctgatgatattggatgatttaagttttt  18377400                                            <------NtERF2        <------MYB46(1)                    --------->LBD16        <------MYB83                      --------->ANAC58       --------->MYB59            <---------YAB1                                                    -       <---------AtMYB61      <---------ARR11(3)         <---------ANAC58                           <       <---------MYB46(3)     --------->ARR11(3)         <---------ANAC46                          --   <------MYB46(1)            <---------GLK1(2)      <------------CBF<----------DOF2       <---------YAB1   <------MYB83             ----------->ARR10     <-----------GT1    ------>ZmHOX2a(1)     <---------AHL20(2)  --------->MYB59          <--------P     <------NtERF2  <---------ANAC55(1)              <---------AHL20(2)  <---------AtMYB61       --------->At5g28300  ----------->GT1<---------PCF2              --------->AHL20(2) -------MYB46(3)         ----------->GT1  --------->ANAC58 --------->ALFIN1              --------->YAB1 ---------MYB52(1)    --------->MYB52(1) <---------LBD16 <---------ANAC58  ----------->RAV1(1)     --   tggttaggtttggtcgaaaaacaagaacggtagattttgatggcccggcatgttacattgcgtgggccatcctttagcaacatatgttgaattttaattc  18377500          ------------>CBF         -------->P         ------>MYB46(1)         ------>MYB83        --------->MYB55(1)       <---------MYB111(1)       <---------MYB111(2)       <---------MYB46(2)       --------->MYB46(3)       <---------MYB55(2)               ----------------------->TaNAC69(2)                  <--------      <---------At4g35610          <---------AHL20(2)                                       <--------    <-----------GT1          ----------->RAV1(1)   <-----------GT1                     <---------AHL20(1)  <-----------HVH21         --------->ANAC58    <---------AHL20(2)    <---------ARR11(3) <---------ICU4 ------>MYC3                --------->ANAC46   --------->AHL20(2)   <---------AHL20(2) --------->AHL20(1) -------MYC3                --------->ANAC58------>ZmHOX2a(1)      <---------ATHB12    <---------AHL20(2) ------->O2   <---------KAN4(1)   --------->AHL20(2)          <---------At4g35610----------->GT1 <--- ------->ANAC46     ------>ZmHOX2a(1) <---------ICU4 --------->ANAC46 --------->ARR11(3)--------->AHL20(2)   cacgtttcacctaccaatattcctatttggacgacattaaatattcctattttatacatcattctgctaataaatcttgaaatttgtaaaatatttacat  18377600                                                                                     --------->AHL20(2)                                                                                    <---------AHL20(2)                                                                                  --------->YAB1                                                   xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)    <---------    <---------TOE1(3)                              xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)--------->YAB1    <---------TOE2(3)                         <---------HSFB2a(2)               <---------AHL20(2)    <---------YAB1                            --------->HSFB2a(2)               --------->AHL20(2) -AHL20(2)                                --------->AHL20(2)      <---------TOE2(3) --------->AHL20(2) ---GT1<--------P                         <---------AHL20(2)  <----------DOF2  --------->YAB1 ----TEIL----------->GT1                ------->TEIL   <-----------GT1    ----------->GT1 <----------   tcatttatggttagtaaatactccctccgttccactaagatgaattttttagaaatttcacattctttaagaaatattgtataaaaataattttaacctc  18377700  Previous    Next  AGI:  At4g39530.1    Description:  pentatricopeptide (PPR) repeat-containing protein. similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT4G13650.1); similar to hypothetical protein OsJ_025868 [Oryza sativa (japonica cultivar-group)] (GB:EAZ42385.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN67343.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO71763.1); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990); contains InterPro domain Pentatricopeptide repeat (InterPro:IPR002885) Range:  from: 18374730    to: 18377234    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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