Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                      <   <xxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                                         <-----   <-----------GT1                                                                        <---------ANAC58 -------DOF2                                                                              <---------ANAC58 ->ZmHOX2a(2)                                                                           <---------AHL20(2) ----RVE1(1)                 <---------TOE2(3)                                          --------->ARR11(3) -ZmHOX2a(2)                 --------->MYB59                                      --------->ANAC58  - ---ARR11(3)                 <---------TOE1(3)        >>>>>>>>>>GATA-1            ----------->GT1   < -->AGP1              <-----------------AG--------->HSFB2a(2)                     --------->ANAC58<-- -->ARR11(3)    <---------ARR11(3)        <---------HSFB2a(2)                   <---------AtLEC2<---- ->GLK1(1)      --------->ARR11(3)--------->KAN4(2) <---------YAB1          xxxxxxxxxxxxxxxx>smallRNA(i)   tttattcactctatcgattatcttgtctgtttaggttattccttctagtagattattatcgtctattttttgtgttgaatttgcaggtaatttcttggtg  18305800                                               ------>ZmHOX2a(1)           --------->ZAT14                   <---------ANAC46           <---------ZAT14              <---------ANAC58          <----------DOF2               <---------ANAC58                     <-----------HVH21      ---------->ID1                    <---------ANAC55(2)              -------->ATHB1 <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)     --------->ANAC55(2)              --------->ATHB12 ---------HSFC1(2)              <---------GLK1(1)                        --------->YAB1            -- ----AtMYB61                    --------->GLK1(1)                    --------->ICU4  <---------AHL20(2) -------->HSFC1(2)<---------ANAC58   ------>ZmHOX2a(1)   <----------DOF2<---------YAB1       -------- ---------At4g35610<----------DOF2  <---------ANAC58     <---------------AGL15       --------->AHL20(2) ------P  <---------DAG2   ---------->DOF2 <---------ARR14(2)   ----------->GT1     --------->AHL20(2) -----MYB46(3)    <---------ANAC58  <---------ANAC58    --------->TOE2(3)<---------ICU4  <-----------GT1   gtagcttcttcgctttactggcttttggagaaagagttccttacgtttcctgtaatttcctttaatctgtaaaaatcattgtcagatttatttacaatct  18305900                                                               <---------AHL20(1)          <---------MYB52(1)                                                               <---------AHL20(2)         <----------DOF2                                                               --------->AHL20(1)         -----------                                                               --------->AHL20(2)        --------->TOE2(3)                                                            ------->TEIL           <---------MYB52(1)        <----------DOF2                                  <---------YAB1           --------->LBD16     --------->ARR11(3)                                <---------ICU4            <---------ANAC58     <---------ARR11(3)                               --------->ICU4             <---------ANAC58 -------->DOF2                                     <---------YAB1              <---------At5g28300 ->GLK1(2)                   --------->ATHB12   ---------->ID1--------->AHL20(2) <---------ANAC46<---   gtaaagagttctttgttgtaaacaattttgttcattggtgatgaaattttgttctcattatgaattttatttgtgatgaaataccgtgattcctttattt  18306000                                                              --------->At4g35610                                                     <---------GLK1(1)                                                    <---------ARR11(3)                                                    --------->ARR11(3)                                                   --------->YAB1                                                  <---------ATHB12       ---------->DOF2                  ---------->DOF2    ---------->DOF2   <----------DOF2                 <---------At4g35610   ----------->HVH21             --------->ZAT6 ---->AGL15               <----------DOF2    --------->GLK1(2)<---------At4g35610    <-----------GT1 --------GT1   <---------YAB1      --------->At4g35610------>ZmHOX2a(2)         --------->MYB46(3)   atcaactttgaaagcttattactgaaaactttgtttgagcttcaaagaatcaatgatctctgaaagctgtaatccacattcaacaaataacactcttata  18306100                                                                                                    -                                                                                                  <--                                                                                          -----------                                                       <------ZmHOX2a(1)                 --------->ARR11(3)                                                     --------->MYB59                     <---------ARR11(3)                                             <---------YAB1              --------->AHL20(2)    ------                                           <-----------GT1  ----------->GT1          ---------->DOF2<              --------->ANAC46          --------->ANAC46  <------------CBF      --------->At4g35610--      --------->AHL20(2)   --------->GLK1(2)------------>CBF--------->YAB1      ----------->GT1<-----   tacaaaaaaaaaatactcgaaatttagaaattctatgtttacaagttacaatagttaggaaattgtaatttcaaatcaaataagctaaaaagatgttatt  18306200                                                                 <---------WOX13(1)                                                  --------->At4g35610                                   <---------AtLEC2 --------->WRKY12                                   <---------ANAC46 ----------->HVH21                                *TSS              <---------At4g35610 -------->AHL20(2)           ------>MYB46(1)      <------NtERF2--------->ATHB12   --------->SPL7 -------YAB1                 ------>MYB83       <---------RAP2.6(2)             <---------SPL7 <----- >GT1                      <---------MYB59<----------DOF2     <---------YAB1  <---------------AtSPL8 --->ICU4                ------->TEIL <------MYB83<---------ATERF1(1) ------>ZmHOX2a(2)        ------ ---------AHL20(2)     --------->LBD16<------MYB46(1)------>NtERF2    <---------LBD16      --------->YAB1 ------->YAB1      <-----------GT1 <---------ANAC58 --------->WRKY38(1)       <---------------AtSPL3- ----YAB1        --------->AHL20(2)<---------ANAC58<----------CDC5 --------->ATHB12<---------DEAR3(1)   attaaaatgttcagacgaattaaaccggacctaatttgcttggtcttttggccgctgaccttgtctgattgatcgggatttttgtacggcgaatcaaaat  18306300            <---------MYB52(1)           --------->LBD16         <---------LBD16        --------->MYB52(1)       --------->MYB52(1)     --------->MYB46(3)   ------>MYB46(1)   ------>MYB83 --------->MYB46(3)                     <---------WOX13(1) --------->DEAR3(1)                 --------->ANAC55(2)                                            -- <---------MYB46(2)                 <---------ANAC55(2)                                   --------->HSFB2a(2) <---------MYB55(2)                <---------LBD16                                        <---------HSFC1(1) ----ARR14(2)                     --------->MYB52(1)                                      <---------HSFB2a(2) --->ARR14(2)--------->SPL7     <----------DOF2         <------ZmHOX2a(2)        <---------AtLEC2  <- -------->ANAC46     <------ZmHOX2a(1) --------->ARR14(2)                 --------->ICU4  --------->HSFC1(1)   ccaccgaacaaaccggaaggctaggatgctcaagctttacggattgacttagagagagatcgatttgaactgtgtcattttgagcatggtttctagaaga  18306400                                              <------ZmHOX2a(2)                                              --------->GLK1(1)                                              <---------GLK1(1)                                            <------ZmHOX2a(1)                               --------->ANAC58                               --------->ANAC58      <---------ATHB12                              <---------LBD16<---------ARR14(2)                             --------->MYB52(1)------>ZmHOX2a(2)                            ----------->HVH21<---------ARR11(3)         ---------->DOF2    ==========================HOX2a_HOX2a                                <---   --------->LBD16          <---------REM1(2)--------->ARR11(3)                                  <--- <------NtERF2              =========================HOX2a_HOX2a                                 <--- ------->ARR14(2)           ------>ZmHOX2a(1)--------->ARR14(2)                             <-------- --------ARR14(2)       <---------ZAT18   --------->MYB59                 <----------DOF2   <--------   ggctccgagacaaaagcgattgtctgtgtcctcacggatagaattaggatctctaatcaatgggtttcgcatttgtctttcgctggtctacttggtgttg  18306500                  ------->GAMYB       <---------ARR14(2)       --------->ARR14(2)       <---------ANAC55(2)    <---------ANAC46            --------->ANAC46    --------->ANAC55(2)         --------->ANAC55(2)    <---------ANAC55(2)         --------->ANAC58                                                    -    <---------ANAC58  --------->ANAC58                                                           ----    <---------ANAC58  --------->ANAC58                                                           ---- ------ANAC58    --------->MYB46(3)                                                        <--------- ------ANAC46   ---------->DOF2 --------->ANAC58                       ---------->DOF2  --------->GLK1(2) ------ANAC58  <---------ALFIN1<---------LBD16                 <---------MYB52(1)      <---------GLK1(2) ---RAV1(1)    ----------->RAV1(1)                            --------->LBD16   --------->LBD16 ----- -REM1(1)      --------->MYB52(1)--------->LBD16            <---------LBD16   <---------LBD16   <----   ctggtttcgtatttgcccaacagcacggtctattccgcaacttaaacaacttaaaactcttctccggtagagaaaaagactccggagacgattcttttct  18306600                                                  --------->LBD16                             <------                                                 <-----------RAV1(2)                         ------>ZmHOX2a(2)                                          <-----------bZIP910(2)                           --------->ARR11(3) ----------->RAV1(2)     --------->MYB52(1)    ------>ZmHOX2a(1)                      <----------DOF2 ------>TEIL  --------->ARR11(3)         --------->TGA2(2)                       <---------ANAC58 ----->TOE2(1)<---------ARR11(3)       --------->bZIP60(2)                       <---------ANAC58 ----->TOE1(1)--------->GLK1(2)        --------->ANAC46           --------->AHL20(2) <---------ANAC58 -DOF2       <---------GLK1(2)     ------>ZmHOX2a(1)              <---------AHL20(2) <---------ANAC58 ---->HSFB2a(2)          <-----------GT1<-----------TGA1   <----------DOF2      <---------At4g35610 -----HSFB2a(2)  <---------LBD16  --------->TOE2(3)--------->ANAC46        <----------DOF2 <---------ARR11(3)   cgtacctggccttcaaaatctcggaaataactgcttcctcaacgtcatcctccaggtaatactttgaattaattcttctttgagcttgcttttgatcttt  18306700  Previous    Next  AGI:  At4g39370.1    Description:  UBP27 (UBIQUITIN-SPECIFIC PROTEASE 27); ubiquitin-specific protease. Identical to Ubiquitin carboxyl-terminal hydrolase 27 (UBP27) [Arabidopsis Thaliana] (GB:Q9FPS0;GB:Q3E9N3;GB:Q9SVC0); similar to UBP22 (UBIQUITIN-SPECIFIC PROTEASE 22), ubiquitin-specific protease [Arabidopsis thaliana] (TAIR:AT5G10790.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO71736.1); contains InterPro domain Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2; (InterPro:IPR001394) Range:  from: 18306232    to: 18308836    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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