Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                    <---------ATHB12                                                                --------->WOX13(1)                                 --------->ANAC58             --------->MYB46(3)                                 --------->ANAC58     --------->ARR14(2)           --------->YAB1                              --------->ZAT2          <---------ARR14(2)           --------->ATHB12                              <---------ZAT2          <---------GLK1(2)            <--------HAHB4                             --------->ANAC58      --------->ANAC58    ----------->GT1                             --------->ANAC46      --------->ANAC58   <---------TOE2(3)                   <-----------GT1                <---------LBD16------>MYB46(1)   <---------ICU4   --------->GLK1(2)         --------->ANAC58    --------->MYB52(1)   <---------TOE1(3) >GT1      <----------ID1  --------->LBD16     --------->DEAR3(2)------>MYB83     <---------ATHB12   ttcagaatcaatagcgacaattgacattccccagcaaggaatcgaaggaaacgacggaatcggaaccaatctatggttatttgaatcatttccaaagggt  18270400                                         =========================HOX2a_HOX2a                                         <------ZmHOX2a(2)                <------NtERF2                                         --------->CCA1(2)              <---------DEAR3(1)          -                                        --------->AGP1                  <---------RAP2.6(2)         <                        <---------HSFC1(2)------>ZmHOX2a(2)            --------->ABI4(2)            <                        --------->HSFC1(2)========================HOX2a_HOX2a                      <-                        --------->HSFB2a(1)                        <---------DEAR3(1)              --                        <---------HSFB2a(1)                    --------->ANAC58                    <-                   <---------LBD16      <---------ARR11(3)     --------->ANAC58                    --           --------->ZAT18              --------->ARR11(3) <------ZmHOX2a(1)        <-----------GT1<-           --------->ZAT14        <---------ANAC58      --------->DAG2 <---------ABI4(1)           --           <---------ZAT14        <---------ANAC58     ---------->DOF2 --------->SPL7              <-           <---------ZAT18        <---------ANAC46     --------->MYB52(1) ------>NtERF2           <--          --------->ALFIN1--------->GLK1(2)       ----------->RAV1(1) --------->ALFIN1           ----   ttgaaattgagagtgtaccatcggggagtttctgtagcgtgagatctaagcacaacataaaggacacgctcggtgcggcgaagtaatgacctttcaacgt  18270500     --------->LBD16   <---------LBD16 ------>ZmHOX2a(2) -------->GLK1(1) ---------GLK1(1) ------ZmHOX2a(2) --------ARR11(3) ------->ARR14(2)            <---------ARR11(3) --------ARR14(2)            --------->ARR11(3)                                  --------->ANAC58 ------->ARR14(3)        --------->MYB52(1)                 <-----------GT1      --------->ANAC58  <- --------ARR14(3)        ---------->DOF2                 ----------->GT1   --------->ZAT18         <- ------->ARR11(3)    ------>NtERF2                   --------->LBD16       <---------ZAT18         <- --------AGP1--------->CCA1(2)                     <---------LBD16        <---------ANAC58    ------- -------CCA1(2)     --------->ANAC58              --------->MYB52(1)      <---------ANAC58    <------ ------->ARR10      --------->ANAC58     ----------->GT1<--------P--------->RAP2.6(3)        --------   agatctccggtgaagctatgagacgcctaaaggtcttggagacgagtgaaatcaccgggtagtaacatttcggcaagcgtgctaagcaattcagaatgat  18270600                                                                  --------->ARR14(2)                                                                  <---------ARR14(2)                                                                 <-------GAMYB                                                                <---------MYB46(3)                                                                <---------DEAR3(2)                                                               <---------DEAR3(1)                                                              --------->ATERF1(1)                                                              <------NtERF2                                                             <---------ATERF1(1)                                                             <---------ORA47(2)                                                             <---------RAP2.6(1)                                                             ------>NtERF2                                                             <---------RRTF1(1)                                                             <---------DEAR4(2)                                                             <---------RAP2.3(1)                                                            <---------ANAC46                                   <------NtERF2            <---------RRTF1(3)                                 <---------DEAR3(1)         <---------RAP2.6(2)           <---------ZAT2                                --------->RAP2.6(3)         --------->ATERF1(2)           --------->At4g35610                    <-------TEIL<---------ORA47(1)          <---------RAP2.3(2)           --------->GLK1(1)   <---------HSFB2a(2)          --------->SPL7              <---------RAP2.3(3)           --------->ZAT2   --------->HSFB2a(2)         ===================HOX2a_HOX2a<---------ERF1           --------->ANAC46 --------ANAC58    --------->CCA1(2)                        <---------RRTF1(2)        --------->ANAC55(2) --------ANAC58    --------->ARR14(1)                       <---------DREB2C(2)      <---------LBD16 --------ANAC46   --------->ARR11(1)       <------ZmHOX2a(2)<---------ATERF1(2)     --------->MYB52(1) -->ATHB12        --------->ARR14(2)      --------->ARR11(3)<---------DEAR3(1)     <---------SPL7 ---ICU4          <---------ARR14(2)<---------DEAR3(1)     <---------LBD16       --------->At4g35610 ->ICU4      --------->MYB52(1)<------ZmHOX2a(1)       <----------DOF2           <---------At4g35610<   ttcgtctggaagtagtaacagatacgatgaacaggacggcgatggatcatgctgtttctttggcggcggttcttcagcgattgagcttacggagctcgaa  18270700         ---------->DOF2      <------NtERF2                 <----------DOF2     --------->LBD16           --------->At4g35610    <---------ANAC46 --------->At4g35610   ------>NtERF2 --------->ARR14(2) --------------->AGL15                        *TSS--------->HSFB2a(2)   <---------LBD16   <---------At4g35610                                    <---------ICU4   <------NtERF2 <---------ARR14(2) <---------DAG2                       --------->YAB1   --------->At4g35610         <---------At4g35610                      <------ZmHOX2a(2) <---------DEAR3(1)--------->MYB46(3)           ---------->DOF2         <---------ATHB12      ------- ---------LBD16  --------->MYB52(1) <---------------AGL15         --------->MYB52(1) <---------HSFB2a(2)   ctcgcggcggaaaaaggcataaccgctgctatgagctgctttttttagtcaaaagttgcaaatgaacaaaaccgatcatcatgtcttctcgcagacatac  18270800                                                              <---------AHL20(2)                                                --------->AHL20(2)                                           <---------AHL20(2) --------->AHL20(2)                                          <---------AHL20(2) --------->AHL20(2)       <---------ANAC58             <---------YAB1    <---------AHL20(2)       <---------ANAC58 ---------->DOF2   --------->AHL20(2)<---------AHL20(2)      <---------------AtSPL8      --------->YAB1<---------AHL20(2) <---------AHL20(2)      <---------------AtSPL3     <---------ATHB12     --------->AHL20(2)          ----------->HVH21      --------------->AtSPL8     <---------ATHB51   <-----------TBP--------->AHL20(2) -->AtLEC2  <----------DOF2  ------------>CBF --------->AHL20(2)  --------->AHL20(2)   aaatgggttgagtacttttatcgaagtaaagcccaattatgtttttaaatttatatttatattttaaattaaaatttagtcaccctgatgggcttaggcc  18270900                            <---------TOE1(3)                    <----------DOF2                                          --------->ANAC58                    <---------DAG2                                           <-----------------AGL1                  ------->TEIL     <----------DOF2                   <----------DOF2                --------->ZAT18 --------->ARR11(3)                   --------->TOE2(3)                <---------ZAT18 <---------ARR11(3)                 <---------YAB1                 <<<              <---------------AtSPL8       <----------DOF2        --------->ARR11(3)              <<<              --------------->AtSPL8    <-----------GT1           <---------ARR11(3)              <<<            <---------TOE2(3)----------->GT1               <----------DOF2   --------->ANAC58 -------         <---------YAB1     <---------TOE2(3)          <---------LBD16  --------->YAB1        -------   catatttctctattaatgtgtactttttataaggtatcttttatactttctcagtttcccgcttttattatctttaatcacccaaatgggcttaggccca  18271000                                                                --------->LBD16                                                                ------>NtERF2                                                               --------->ANAC58                                                               --------->ANAC58                                                               --------->ANAC46      ---------->DOF2                                         <---------LBD16       --------->ATHB12 <<<<<<<AGL22                           <----------DOF2      >>>>>>>>>>E2Fb       <---------DAG2 <<<<<<<AGL24                        <-----------GT1       <-----------GT1<---------ANAC58 <<<<<<<AGL20<------NtERF2          <-----------GT1--------->YAB1         <---------ANAC58 ---------->AGL2          <---------AHL20(2)     --------->ANAC58    --------->ARR14(2)             - ---------->AGL3         --------->AHL20(2)      --------->ANAC58   --------->O2  <----------DOF2  <-   tatttagataaaggcctcaatgtgcgattttataagttttatctttttcgcaagcatcaaatttcccgccatgtctgcgtctcactttattggaacaagt  18271100                                                                             <---------GLK1(2)                                                                             <---------ARR11(3)                                                                             --------->ARR11(3)                                                                             --------->ARR14(2)                                            --------->MYB52(1)       <---------ICU4         <--------       <-----------GT1           <---------AtMYB61      --------->ZAT2       <---------ARR14(2) <---- --------->ID1       --------->YAB1        ------>ZmHOX2a(1)       <---------YAB1           <-------- ----------GT1 --------->LBD16----------->HVH21      ---------->DOF2 --------->MYB52(1) <--------P   ttttcgtttttaaaatccccaattcataaaccctgatggtgtttcctaatggaatcaaagctcgcgattactaatggcagatttttcgaggtagcttttt  18271200                                                    <---------ANAC58                                                    <---------ANAC46                                                    <---------ANAC58                                                    <---------bZIP60(2)                                                  <---------TGA2(2)                                                 ----------->TGA1                                                 ----------->HVH21                                            <---------ANAC58                                            <---------ANAC58                                            <---------ANAC55(2) --------->ZAT2                             --------->ANAC55(2) <---------ZAT2                         --------->ATHB12                               <---------GLK1(2) <---------At4g35610                    <--------ATHB1                       --------->TOE1(3) --DOF2       <----------DOF2          --------->ICU4                     <-----------GT1<-------TEIL -------GT1  <---------ANAC58          <---------YAB1                   <---------MYB52(2)--------->ATHB12 -DAG2       <---------ANAC58          <---------ATHB12        <---------YAB1--------->TOE2(3)-------   tccagctatgtttttgctttagttattcattttctaagacaatgattcgtgatgacgttggagttttcattacaaataaccttaatacagattcatttgt  18271300  Previous    Next  AGI:  At4g39240.1    Description:  kelch repeat-containing F-box family protein. Identical to F-box/Kelch-repeat protein At4g39240 [Arabidopsis Thaliana] (GB:Q9T031); similar to kelch repeat-containing F-box family protein [Arabidopsis thaliana] (TAIR:AT4G14905.2); similar to kelch repeat-containing F-box family protein [Arabidopsis thaliana] (TAIR:AT4G14905.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO71765.1); contains InterPro domain Kelch repeat type 1 (InterPro:IPR006652); contains InterPro domain Kelch-type beta propeller (InterPro:IPR015915); contains InterPro domain Kelch repeat type 2 (InterPro:IPR011498); contains InterPro domain Cyclin-like F-box ( Range:  from: 18269144    to: 18270781    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version