Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                        ------->MYC2                                                                                      <-------MYC3                                                                                      ------->PIF5                                                                          <---------ANAC46                                                                          <---------ANAC58                                                                        <---------ANAC58                                                                        <---------ANAC58                                                                     <----------DOF2  <-------PIF5                                                                    <---------HSFC1(2)------->MYC3                                                                    --------->HSFC1(2)<-------MYC2                                                                    <---------HSFB2a(1)                                                                    --------->HSFB2a(1)                                                                --------->ANAC46     --------->ANAC58                                                           ----------->HVH21         --------->ANAC58                                                          --------->AtMYB61          --------->ANAC46                                                       <---------ALFIN1 <---------ANAC46                                              ----------->GT1   --------->ANAC58   <---------ALFIN1                                         ---------->CDC5 --------->ANAC46 <---------ANAC58                                   <---------GLK1(2)<-----------GT1------->TEIL  <------ZmHOX2a(2)                               <---------MYB52(1) --------->YAB1--------->ANAC58--------->ARR14(2)                       ------>ZmHOX2a(1)------>ZmHOX2a(1)--------->bZIP60(2) --------->SPL7 ---------   ctccttggctccatggaattgtctcctccctccgatagattcctcagggcgataataccacctcacacgaactttcgcgtgcgatccacgcgcgtccgtc  18219900                                                --------->RAP2.6(2)                                             ------>NtERF2                                            --------->MYB46(3)                                            ----------->HVH21                                            --------->DEAR3(1)                       ----------->HVH21    <---------ETT(2)                      --------->SPL7        --------->ETT(2)                    <---------SPL7        ------>NtERF2                    --------->TOE1(2)    --------->DEAR3(1)                    --------->TOE2(3)                    --------->TOE2(2)    ----------->HVH21             <----------DOF2              --------->ANAC58          --------->ATERF1(1)    <---------GLK1(1) --------->ANAC46              --------->ANAC58          --------->DEAR3(2)     --------->At4g35610              --------->ANAC46          <------NtERF2        <---------GLK1(2) ------->GAMYB  ------>ZmHOX2a(2)<---------ANAC55(2) <---------ATERF1(1)--------->ANAC46    --------->MYB46(3) >SPL7  <---------ALFIN1  <XXXXXXXXXXXXXXXXXXXXMIR4228  <---------ALFIN1    <-----------GT1    <-----   tcgatcgcctctaccctcgctacgtacgacggttttccaggctccgacgaccgcatcaacacagcatctccctctttttaaccacaaaacaacatcgaac  18220000                --------->ANAC58                --------->ANAC58              --------------->AtSPL3                --------->ANAC46         <-----------HVH21           --------->ARR14(2)           --------->ANAC58                                         ----           <---------ARR14(2)           --------->ANAC46                                      -------           <---------ARR11(3)           --------->ANAC58                                      <------    <----------DOF2------->TEIL <------ZmHOX2a(1)   --------->TOE2(3)                         <------ ----TOE1(2)   --------->LBD16<---------TOE2(3)   ------->TEIL                         <------ZmHOX2a(1)   gattcactttcaatatccacgaatttcaaattgaggatgaacaagtcagacgtaccttgaatactcttgttgatgtgtttgagtttataggacttgagct  18220100          <---------DAG2  <---------ANAC46      ----------->RAV1(2)  <---------ANAC58      --------->At4g35610                 <---------At4g35610  <---------ANAC58      <---------At4g35610                 --------->At4g35610 ----->At4g35610<---------ANAC58                           ------->TEIL -->At4g35610   <---------ANAC46                        <---------REM1(1) ---At4g35610   <---------ANAC58    --------->DAG2    --------->YAB1                                - ---ZAT2  <----------DOF2         ---------->DOF2    --------->ICU4                        <---------ATHB12   gcttccttggagctttttgcttgggcatctgaaactgaaaggtgagtaatggacgatgatgaagctcaaggtttttgcgaacagtttttctcaatgaata  18220200                                                                     --------->ATHB12                                                          <---------LBD16                                                        ------>ZmHOX2a(2)                                                       --------->GLK1(1)                                                       <---------GLK1(1)                                                       <------ZmHOX2a(2)                                                       =============HOX2a_HOX2a                                  ----------->GT1     <---------ARR14(2)     --------->ZAT18                                <---------------------WRI1<-----------RAV1(2)<---------ZAT14                                <---------ZAT14       --------->ARR11(3)    *TSS                                --------->SPL7        <---------AGP1<---------YAB1                                --------->ZAT18       <-----------ARR10   <---------ANAC58  ---------                            <---------------AtSPL3    --------->ARR14(2)  <---------ANAC58  =========                  <---------TOE1(2)--------->At5g28300<---------ARR11(3)  <---------ANAC46--------->ARR11(3)            --------->WOX13(1)<---------SPL7          --------->GLK1(2)  <---------MYB46(3) ------>ZmHOX2a(2)          <---------YAB1    <------NtERF2            <------ZmHOX2a(1) <---------WOX13(1) <---------ARR14(2)         --------->TOE2(3) --------->LBD16       --------->ICU4 <---------ANAC58          <---------ARR11(3)        --------->YAB1   <---------LBD16    --------->ANAC58    <---------ANAC46          --------->ARR14(2)     --------->YAB1     <---------ANAC46    --------->ANAC46    <---------ANAC58         <------ZmHOX2a(1) -------->WRKY18(1)<---------CCA1(2)        --------->ANAC58 <------ZmHOX2a(1) ------------>CBF   cagtcaagaatcatcaatcgcatgtctcgcggagtacggtaagaacaagtcatgaggatctcaggagcgtatgattgggtgtacaatggcaggatcgtga  18220300                                                               <----------DOF2                                                          --------->TGA2(2)                                                         <-----------HVH21                                                         <-----------TGA1                                                        --------->TGA1a                                                        --------->O2                                                        <---------TGA1a                                                        ==================bZIP_DOF                                                        --------->ANAC58                                                        <---------O2                                                        --------->ANAC46                     <------NtERF2                                                        --------->ANAC58                 --------->ANAC55(2)                                                        <---------bZIP60(1)              <---------ANAC55(2)                                                        --------->bZIP60(2)    ------->MYC2 ------>NtERF2                                                       <-----------STF1        ------->MYC3--------->ANAC58                                                   <-----------GT1             <-------MYC2--------->ANAC58              ----------->GT1                     --------->WRKY12             <-------MYC3--------->ANAC46              <----------ID1                    <------------CBF              <---------ANAC58      ---------->DOF2               <-----------HVH21 <---------ALFIN1        <---------ANAC58     <------ZmHOX2a(1)  ----------->GT1      ------------>CBF--------->At4g35610       --------->CCA1(2) -->GT1   ---------->DOF2        <---------GLK1(2)--------->WRKY38(1)         <---------ANAC46 ===========HOX2a_HOX2a----------->GT1    --------->GLK1(1)  <---------At4g35610--------->ALFIN1   --   atatagaggaaagaaagggagaaaatgggtaaatagaatgtcagatagccaattgaccacgtcagcttttaagtggaagcgcgtgtgtgatacgcgcctc  18220400                                          --------->ANAC58                                      ============================================bZIP_DOF               <---------ANAC58       --------->ANAC58               <---------ANAC58       --------->ANAC46         <----------DOF2              --------->ANAC55(1)         =======================================bZIP_DOF                                <---------AtLEC2        <---------DAG2                --------->ANAC55(2)                               <---------ANAC58    <---------ALFIN1                  <---------ANAC55(2)   <---------bZIP60(2)         <---------ANAC46   --------->At4g35610                --------->bZIP60(2)   <---------ANAC58       <-----------RAV1(1)   <---------ATERF1(1)                --------->TGA1a    <---------YAB1            --------->ALFIN1   <------NtERF2                      --------->ANAC58 <---------ICU4            <---------ANAC58   --------->ATERF1(1)                <---------O2  --------->YAB1               <---------ANAC46   <---------At4g35610                ============================================bZIP_DOF  --------->RAP2.6(2)   <---------ANAC55(2)  --------->WOX13(1)                  <---------ANAC58  <---------ATERF1(1)   ----------->GT1   --------->ANAC58  <---------ANAC58 <----------DOF2 <---------ZAT18      --------->YAB1  --------->O2  <---------ICU4 ------>ZmHOX2a(1)<-------GAMYB ------->ANAC46<---------ANAC46       <---------TGA1a --------->ICU4   <----------DOF2  <---------ANAC58   taggccgctcccttttgtcgtgaatcatgtaaaattagccacgtaagcaattactcattatgacttgtcctgactttgtctttgtgtgttgcatgttttc  18220500                                                                                   --------->ATHB12                                                                                   --------->YAB1                                                                                  <---------YAB1                                                                                 <---------TOE2(2)                                <---------HSFB2a(1)                            --------->TOE1(2)                      <---------AHL20(1)                                      --------->ANAC55(2)                      <---------ARR11(3)                                      <---------ANAC55(2)                      --------->AHL20(1)                                     ------->TEIL                      --------->ARR11(3)                                     <-------TEIL                  <------ZmHOX2a(1)                                          --------->SPL7                <---------TOE1(3)                                            <---------TOE1(2)                <---------TOE2(3)                                          <---------SPL7           <         <---------GLK1(1)      --------->HSFB2a(1)        <---------YAB1 <---------ANAC58          -         --------->GLK1(1)     ------->TEIL          <-----------GT1      <---------ANAC58         --       <------ZmHOX2a(1) <---------AHL20(2)      <---------AHL20(2)      <---------------AtSPL3   <--   agataaataggaaatgctaaggaatattttaagaacctttcaattctatatttattcacttattattcaattctatgcgtacgtatgattacattcgaaa  18220600                                                                                 ------->GAMYB                                   <---------MYB52(2)          --------->LBD16   --------->TOE2(3)                                   --------->MYB46(3)         --------->ANAC46  <----------ID1                       --------->ANAC58                      <---------LBD16    --------->MYB46(3) ---------GLK1(1)      --------->ANAC58         <-----------ARR10           --------->ARR11(3) -------->GLK1(1)    ---------->DOF2            --------->ARR14(2)      ---------->DOF2 ------->ARR14(2)    <---------ATHB12           <---------ARR11(1)--------->ANAC58 ----ZmHOX2a(1)---------->ID1   <----------ID1  <---------ARR14(2)--------->ANAC58       ---------->DOF2   ggatttccaacatttttgtcccaataagcaaattggaacaaacacatccaaatctacataatttgcgcaagaaaaaaagataaccacaaaaaaaagacat  18220700                                         <---------ALFIN1                                         ----------->RAV1(1)                                        <------NtERF2                                       ------>NtERF2                                      --------->RAP2.3(3)                                      --------->DEAR3(1)                                      --------->PCF2                                     --------->ATERF1(1)                                    <---------ATERF1(1)                                    ------>NtERF2                                   --------->ANAC58                          <-------GAMYB                                   --------->bZIP60(1)                      <---------ANAC46                                   <---------bZIP60(1)                      <------MYB83                                ----------->HVH21                           <------MYB46(1)                            <---------YAB1       <---------ZAT14           <---------MYB46(3)                          --------->CCA1(2)      --------->ZAT14          <---------ANAC46        ----------->GT1  --------->ARR14(2)    --------->ANAC46        <-----------RAV1(1)   --------      ---------->DOF2    <---------ARR14(2)<---------ALFIN1            <---------ZAT6 --------->YAB1   ----------->GT1 --------->DAG2  --------->ANAC58                    --------->ALFIN1      --------   aaaaacagtaaagaaaatcaaaaattggatatgaatgacgcccccacacactgaactgaagtttgtgttttcagtgttgggttgagaataaaaaccaaag  18220800  Previous    Next  AGI:  At4g39100.1    Description:  SHL1 (SHORT LIFE). similar to DNA binding [Arabidopsis thaliana] (TAIR:AT4G22140.2); similar to Os07g0186400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059071.1); similar to unknown [Picea sitchensis] (GB:ABK21119.1); contains InterPro domain Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); contains InterPro domain Zinc finger, PHD-type; (InterPro:IPR001965); contains InterPro domain Zinc finger, FYVE/PHD-type; (InterPro:IPR011011); contains InterPro domain Bromo adjacent region; (InterPro:IPR001025) Range:  from: 18217933    to: 18220276    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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