Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                      ------>ZmHOX2a(2)                                                   <------ZmHOX2a(2)                                                  <---------ARR14(2)                                                  --------->ARR14(2)         ----------->RAV1(2)                          <---------ANAC55(2) <------NtERF2                --------->ANAC58                          --------->ANAC55(2)--------->MYB52(1)            --------->ANAC58                          <---------ANAC58   ------>NtERF2                <xxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                ------>ZmHOX2a(2)           --------->DEAR3(1)          <xxxxxxxxxxxxxxxxsmallRNA(s) ------>GLK1(1)<------ZmHOX2a(2)            ----------->HVH21      ------>NtERF2 -------GLK1(1)--------->CCA1(2)            --------->At1g77200   --------->ANAC58 ---ANAC55(2) <---------AGP1               --------->ATERF1(1)    <---------bZIP60(1)    <----------DOF2 -->HSFB2a(2) <---------ARR14(2)           <------NtERF2          --------->bZIP60(1)<-------TEIL -->ANAC58    --------->ARR14(2)           --------->RAP2.3(1)    --------->ANAC58  --------->ARR14(1) ---HSFB2a(2) --------->ARR11(3)           --------->DEAR3(2)    --------->ATERF1(1)--------->CCA1(2) -->ANAC58    --------->AGP1             --------->DEAR3(1)     <---------TGA2(2)  --------->ARR14(2) -->ANAC46  ----------->ARR10            <---------DEAR3(1)    ----------->TGA1    <---------ARR14(2) -->ANAC55(1) <---------ARR11(3)        --------->ATERF1(1)    ----------->HVH21   --------->ARR11(1) -->ANAC55(2)<---------CCA1(2) --------->ZAT6<---------ATERF1(1)<---------ATERF1(1)<---------GLK1(2) --LBD16 <-----------HVH21<---------ANAC58<---------ATERF1(1)<---------At4g35610 ----------->ARR10   aactcagaccgagtcagatctgagaactgcgtaacaccatgagtcgccgacggatccaacttctggtgacgcctcgctcgcctgagattcgctttgaaaa  18217100                                              --------->HSFB2a(1)                                            --------->ARR14(2)                                          --------->LBD16                                         <---------HSFB2a(2)                                         --------->HSFB2a(2)                                       ------>MYB83                                       ------>MYB46(1)                                              <                                       -------->P                                                   -                                   --------->ARR11(3)                     ----------->RAV1(2)      --                                   <---------ARR11(3)                     --------->At4g35610      <-                                 --------->WRKY12               ---------->DOF2                    <-                <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)<----------DOF2    ------>ZmHOX2a(2)         ---         --------->YAB1          ----------->ARR10XXXXXXXXXXXXXXXXXXXXX>MIR173         ----------->RAV1(2)   --------->GLK1(2)          <---------ANAC46<---------HSFB2a(1)--------->DAG2----------->GT1   <---  <---------GLK1(2) ------>ZmHOX2a(1)--------->AtMYB61     ----------->GT1------>ZmHOX2a(1)     <----   ccgagaatctatagtcatgctcctcgttggaagcgtagaccttcccgaacttccgcttgaagagagaaaagtgatcctctgaggtcaaaacctgaggctc  18217200            <---------MYB55(2)           --------->O2           --------->ZAT2           ----------->RAV1(2)           --------->At4g35610          --------->MYB52(1)         <---------ALFIN1         --------->AtMYB61         ------->GAMYB        --------->MYB46(3)        <---------MYB111(2)        <---------MYB55(2)       -------->P       ------>MYB46(1)       ------>MYB83      --------->MYB55(1)     <------------AtMYB84     <---------MYB111(2)     --------->AtMYB61     <---------MYB46(2)     <---------MYB55(2)     <---------MYB111(1)                 --------->WRKY12     --------->DEAR3(1)                <-------GAMYB     --------->MYB46(3)               <---------MYB46(3)    --------->MYB46(3)              <-----------HVH21  <---------ALFIN1          <------ZmHOX2a(2)            --------->MYB52(1) ---------ATERF1(1)        <---------ARR11(3) --------->At4g35610 ----->NtERF2--------->MYB55(1)     ------>NtERF2--------->At4g35610 ------->PCF2----------->HVH21     --------->DEAR3(1) --------->ANAC46 --------TCP20             --------->ARR11(3) <---------At4g35610 --------TCP16(1)      --------->ANAC55(2)  <---------bZIP60(1)                  --------->MYB52(1) ------>At4g35610      <---------ANAC55(2)  --------->bZIP60(1)      ---------->DOF2   --------->MYB52(1) ------ATERF1(1)    <------ZmHOX2a(2)<------NtERF2    --------->ANAC58     <----------ID1         --- -----DEAR3(1)--------->MYB52(1)--------->DEAR3(1)    --------->ANAC58   ---------->DOF2  -----------   ggctccaccaaccacctgacggatcacgagatcatcgccgtcgttgacatcagacgacgaaaccgagacgataaagaaagacaaaacgaaaacggagaaa  18217300                                                                                            ---------                                                                                            <--------                                                                                            <--------                                                        <---------YAB1                 --------->ANAC55(1)                                                       --------->AHL20(2)              --------->ANAC46                                                   <------ZmHOX2a(1)                   --------->ANAC58            <------ZmHOX2a(2)             <---------At4g35610                          --------->ANAC58           <---------ARR14(2)             --------->At4g35610                          <---------ANAC55(2) ------->DOF2                 XXXXXXXXXXXXXXXXXXXX>MIR159A                             --------->ANAC55(2) >GT1      --------->ARR14(2)--------->YAB1        ----------->GT1            <---------GLK1(2)   taaagcttaagacgatccatttgatttgcaattagattgaaggaagcagagaaggattaatatagatagaaccctcagtagattatcacacgcaacgtga  18217400                                       --------------->AGL15                                     <-----------GT1                                     ---------->ID1                                 <----------DOF2                                                    <                             <---------O2                                                           <                             --------->ANAC55(1)                                                   <-                             --------->ANAC55(2)                                                   --                             --------->ANAC46                                                    <---                             --------->ANAC58                               *TSS                 ----                             --------->ANAC58                          <---------ARR11(3)        <---                             --------->O2<----------DOF2               --------->ARR11(3)       <----                           <---------ALFIN1                           --------->YAB1<---------ARR11(3)                           --------->REM1(1)                         <---------YAB1 --------->ARR11(3)                          <---------REM1(2)                          <---------TOE2(3)        ------- >O2                   --------->At4g35610                      <----------DOF2     --------->AHL20(1) -O2            ----------------------->TaNAC69(2)          <---------MYB52(1)  ---------->DOF2 ----- -ANAC46 ------->TEIL  <---------At4g35610            <----------DOF2<---------TOE1(3)<------------CBF   atgtataggtgtatgtataggtctctgctacacgtctttttccctttggagattagctttcggtttcttttaagataattttaaaagatattgttgtcat  18217500   --------->YAB1                           --------->YAB1  <---------YAB1                            <---------ICU4 --------->AHL20(2)                      <---------AHL20(2) --------HAHB4                          --------->ICU4 ---------ICU4                          --------->AHL20(2) --------YAB1                     <---------TOE2(3)                                            <----- ------->ICU4                 <-----------TBP                                                  <----- -----HAHB4                 <---------RVE1(1)          <---------At4g35610                   -------- ----->YAB1                 <---------CCA1(1)      <---------AHL20(2)                       <-------- ------ICU4                --------->ARR11(3)    <---------YAB1                             --------- -----YAB1                 <---------ARR11(3)   <---------AHL20(2)       ============================ -->YAB1                   <---------ARR14(2) <---------YAB1             ---------->DOF2--------->MYB46(3) ---->ICU4 <------NtERF2 ----------->ARR10 <---------YAB1   <---------DAG2        <---------ZAT6   cattattatagtcggagaaaaaatcggaagatatttatggtatttattattattttaagatgccttatccaaggggaaaggagagagttaaccaatgatg  18217600              --------->YAB1              --------->ATHB12              -------->ATHB1              <---------ICU4      <-------MYC3      <-------MYC2      ------->MYC3      ------->MYC2      ------->PIF5      ------->MYC4      <-------MYC4     <---------O2     --------->TGA1a                                                      --------->REM1(2)     <---------ANAC55(2)                                                 --------->ALFIN1     <---------TGA1a                                                   <---------ANAC46     --------->O2                                                      <---------ANAC58     --------->ANAC55(2)                                               <---------bZIP60(2)   <---------ALFIN1                                                    <---------ANAC55(1) ----REM1(1) <---------ATHB12                                          <---------ANAC58 ----ANAC46  <---------YAB1                                          --------->ZAT14 ->YAB1      --------->ICU4                       <-------TEIL       <---------ZAT14       --------->AHL20(2) -ATHB12   --------->WOX13(1)                  <------MYB46(1)  <---------At4g35610      --------->TOE2(3) >ICU4<-------PIF5                             <------MYB83     --------->At4g35610      --------->YAB1 ==============bZIP_DOF                    <XXXXXXXXXXXXXXXXXXXXXXXMIR405A/B/D <---------ANAC46   tagaaccacgtgttaatcattgaatgggtatggagtaatggaatgggataggttcaacttgttgttagcagtgccgtgttgtcttggataatattaattc  18217700                                                                          <---------At4g35610                                                                          --------->At4g35610                                                                          <-------GAMYB                                                                         --------->MYB111(2)                                                                         --------->MYB111(1)                                                                         <---------MYB46(3)                                                                         --------->MYB52(2)                                                                         --------->MYB46(2)                                                                         --------->MYB55(2)             --------->TOE2(3)                                          <---------MYB55(1)             <----------DOF2                                           <---------MYB52(1)             --------->TOE1(3)                                       ------>ZmHOX2a(2)      --------->HSFB2a(2)             <---------DAG2              --------->ATHB12      <---------HSFB2a(2)             <----------DOF2            --------->ICU4 <----------DOF2                    ------>ZmHOX2a(1)            <---------YAB1                   <--   tctcttttctaaaaactttaaaaaatagttctatcttcctctttttctgagacaaatgtagaagctcatgatcggtagttgccatgtttctcttctctga  18217800                                              --------->AHL20(1)                              --------->AHL20(1)                              --------->AHL20(2)                        <----------DOF2                              <---------AHL20(2)             <---------ZAT14                   --------->ZAT14            <---------AHL20(2)     --------->LBD16                   <---------ZAT14            --------->AHL20(2)     ------>ZmHOX2a(1)             <-                   <---------ZAT18            <---------YAB1 --------->ZAT18                  ------>MYB83                   --------->ZAT18           <---------AHL20(2)    ----------->RAV1(2)        ------>MYB46(1)   --------->AHL20(2)        --------->AHL20(2)              <---------ZAT18                <--------   <---------AHL20(2)        <---------AHL20(2)             <---------ZAT6           <----------DOF2  --------->AHL20(2)       --------->YAB1    --------->AHL20(2)------->TEIL        ------->TEIL ----- -----TEIL   >>>>>>>>>>>>>>>>>LFY      ----------->GT1     --------------->AtSPL8<---------ZAT14<----   ttcatttatttatgttcccagtgtactaaaaataatttgtaatgtaattttattgatttttagtgtacctcctggtttttggctgtactttgaaccaaat  18217900                                                                                            <--------                                                                                            ---------                                                   ---------->DOF2                          <-------- --------YAB1                                  --------->AHL20(2)                        <---------ZAT6 -MYB59    --------->YAB1           <---------ANAC58                                  --------->HSFB2a(2) ---->ICU4<---------YAB1            <---------ANAC58     ----------->GT1        ----------->GT1    -- -----ATHB51              <----------DOF2      <---------AHL20(2)    ---------->DOF2  <---------HSFB2a(2)   tatgaagacacgatgatcaaatatgtctctttgaatatgcgttttagaattaataaagaatgaaaaactaataaagaatgaagggtttctagagttcaca  18218000  Previous    Next  AGI:  At4g39090.1    Description:  RD19 (RESPONSIVE TO DEHYDRATION 19); cysteine-type peptidase. Identical to Cysteine proteinase RD19a precursor (RD19A) [Arabidopsis Thaliana] (GB:P43296); similar to cysteine proteinase A494, putative / thiol protease, putative [Arabidopsis thaliana] (TAIR:AT2G21430.1); similar to senescence-associated cysteine protease [Brassica oleracea] (GB:AAL60581.1); contains InterPro domain Peptidase C1A, papain; (InterPro:IPR013128); contains InterPro domain Peptidase C1A, papain C-terminal; (InterPro:IPR000668); contains InterPro domain Peptidase, cysteine peptidase active site; (InterPro:IPR000169); contains InterPro domain Proteinase inhibitor I29 Range:  from: 18215550    to: 18217476    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At4g39100.1    Description:  SHL1 (SHORT LIFE). similar to DNA binding [Arabidopsis thaliana] (TAIR:AT4G22140.2); similar to Os07g0186400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059071.1); similar to unknown [Picea sitchensis] (GB:ABK21119.1); contains InterPro domain Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); contains InterPro domain Zinc finger, PHD-type; (InterPro:IPR001965); contains InterPro domain Zinc finger, FYVE/PHD-type; (InterPro:IPR011011); contains InterPro domain Bromo adjacent region; (InterPro:IPR001025) Range:  from: 18217933    to: 18220276    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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