Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                         <---------TOE2(3)                        --------->DEAR3(1)                                    --------->ICU4                            <---------At4g35610                                    <---------YAB1                            --------->LBD16   --------->ANAC58               <---------ICU4                              --------->ZAT14   --------->ANAC58              --------->ICU4                               --------->At4g35610 ---------->DOF2                 <---------YAB1                              --------->ANAC46 ------ZmHOX2a(1)              <---------ICU4                               <---------LBD16 ------>MYB59                  --------->YAB1                        --------->At4g35610 >GT1       --------->TOE2(3) --------->ICU4------>ZmHOX2a(2)        <---------At4g35610         ---- ------------>ANAC81         --------->ARR11(3)                <-------TEIL------>ZmHOX2a(1) <-------   taggaaagcacaaaccttggttctcgctggtgatcatgattatggatcgatcgatgaaacacaaattcgtctgcttcctccgcagtcgaattgtagtttt  18202300                                                                                         <-------GAMYB                                                                                      ------>NtERF2                                                                                      --------->ABI4(1)                                                                                     --------->DEAR3(1)                                                                                     --------->ANAC46                                                                                     <---------DEAR3(1)                                                                                     --------->RAP2.3(2)                                                                                     --------->RAP2.3(3)                                                                                     --------->RRTF1(3)                                                                                    --------->ORA47(2)                                                                                    --------->ERF1                                                                                    --------->RAP2.3(1)                                                                                    --------->ATERF1(1)                                                                                    --------->DEAR4(2)                                                                            --------->ARR14(2)         --------->At4g35610                                                <---------ARR14(2)    ---        --------->GLK1(2)                                                <---------ICU4 --------->DEAR3(1)        <---------ARR14(2)                                               --------->YAB1<------NtERF2-        --------->ARR14(2)                                       <---------ANAC46  <---------RAP2.3(1)   ---------->DOF2                                              <---------MYB52(1) <---------ATERF1(1) ------>DOF2    <---------ZAT2                                 <-----------HVH21------>ZmHOX2a(1) <-- --ZAT6<---------GLK1(2)       <-----------GT1           ------>ZmHOX2a(1) <---------CCA1(2)      ---   aaagccaaagaatctgccaactggtcgtcaatttcactatccctctcttggccatcgtccttctccgtcgtgtaatcatatccttcgccgccgttgaaag  18202400                               <----------DOF2                              ------>ZmHOX2a(2)                             <------ZmHOX2a(2)                            --------->AGP1                            --------->ARR14(3)                            <---------ARR14(3)                            --------->ARR11(3)                            <---------ARR11(3)         ---------->DOF2    <---------ARR14(2)                                    <---------WOX13(1)       ----------->HVH21    --------->ARR14(2)                        --------->ZAT18             ---     <---------ANAC46     ----------->ARR10                           <---------ZAT18             ===     <---------ANAC58   <---------ANAC58                              --------->ZAT14   <------------CBF     <---------ANAC58   <---------ANAC46                              <---------ZAT14 <---------YAB1    <---------MYB46(3)  <---------ANAC58                          --------->DAG2 <------------CBF <-- ------>ARR14(2)       <------NtERF2                             ---------->DOF2--------->ATHB12  <-- -------->ATHB12      ------>NtERF2    ----------->GT1           ==================================== -------ARR14(2)     <---------DEAR3(1)<---------ANAC46  --------->ANAC58     <---------WOX13(1)  --- ------>GLK1(2)      --------->ALFIN1------>ZmHOX2a(2)   --------->ANAC58    <------------CBF <------   aatccttgggtgaaagcgtttcggtggcgagatctttgatcgtgtgaaattagggagtcacgaactaaaaagtgaactcgattgattgaagattgttgtc  18202500                                                                                             --------                                                                              >>>>>>>>>TBF1<------ZmHOX2a(2)                                                                           >>>>>>>>>TBF1  --------->ARR11(3)        ---------->DOF2                                                 >>>>>>>>>TBF1     <---------ARR11(3) ------>O2--------->ANAC58                                           >>>>>>>>>TBF1  >>>>>>>>>TBF1 ==================bZIP_DOF                                       >>>>>>>>>TBF1  >>>>>>>>>TBF1 -------O2--------->ANAC58                                       xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) -------TGA1a                                ----------->GT1   >>>>>>>>>TBF1------------------------>ANAC81 =======bZIP_DOF                       <------------CBF       xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)-- ------>TGA1a                     --------->ANAC58      ---------->DOF2xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) -----HVH21                       --------->ANAC58  ---------->DOF2 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)   acgagagaaggaaagcacatcagtgatcagtctcgcagggaaattgcaggtaaaaaaagaaagaagaagaagaagaagaagaagaagaagaagatcaaag  18202600                                                                      <------------CBF                                                                --------->ANAC58                                >>>>>>>>>TBF1                   --------->ANAC58 -->DOF2                     >>>>>>>>>TBF1                 --------->At4g35610        <------------CBF --------->GT1  <---------GLK1(1)   --------->CCA1(2)      <---------At4g35610 ---------->DOF2 <-----   atggtattttggtttttgatttctcaacgaagaagaagaaacgagagttggagtatttatcagcaaacgctccattgaaaaaaaaggaaattgtctcctt  18202700                                                                    --------->AHL20(2)                                                                  --------->YAB1                                                           <---------MYB52(1)                                                          <-------GAMYB                          <---                                                         --------------->AGL15                   ----                                         ----------->GT1 <---------------AGL15            <---------AHL20(2)                                        --------->DAG2   ============================================                                       ---------->DOF2 <---------DOF5.7(2)                --------->AHL20(2)  <---------YAB1               ----------->GT1         <---------At5g28300               <---------AHL20(2) -----DOF2     ---------->DOF2<---------TOE2(3)       <-----------GT1              --------->HSFB2a(2)   tattatgttttgcgaagaaaaggaaattgatcaaggtaacaaaaagtcaaattaagttaccgttacaagaataaatatgtttcttctgtaatttatatga  18202800                                                               --------->ZAT6                                                          ----------->GT1                              ----------->GT1      --------------->AGL15                           --------->CCA1(2)    --------->ANAC58 ------YAB1           ---------->DOF2           --------->ANAC58           ---------->DOF2 ------->GT1     <---------MYB46(3) --------->TOE2(3)   ---------->DOF2   --------->YAB1 ==================================================================MADS_MADS                        -   tgtttaaaatttagagcgattgttgaaagagatggaaacatcaacaaaacaagccttgtaaagtaacacaaatctataaaagtcaaacctagtcatctat  18202900                                                     --------->YAB1                                           --------->YAB1         --------->ANAC58                 <<<<<<<<<ARR1         --------->ANAC46                 <<<<<<<<<ARR2                       <---------AHL20(2)         --------->ANAC58     XXXXXXXXXXXXXXXXXXXX>MIR167C                   <---------YAB1        <---------LBD16     --------->ANAC46      --------->WOX13(1)        <---------AHL20(2)  ----- -------->YAB1     ----------->GT1   --------->YAB1 <---------ATHB12 <-----------GT1<---------YAB1   tagcataatgctcggaacagaatgaaaaatatgccactagcacaatcttactcaatcatatatagttgttcttactatttttatttgttattgctctgag  18203000                                                                          ----------->GT1                                                                      <---------ICU4                                                                      --------->YAB1                                                                      <---------AHL20(2)                                                                      -------->HAHB4                                                                      --------->ATHB12                                                                      -------->ATHB1                                                                      <--------HAHB4                                                                      --------->ATHB51                                                                     <---------ATHB51         <------                    <----------DOF2                                  --------->ICU4    --------->TOE2(3)                --------->ZAT18                                   <---------YAB1       --------->YAB1                <---------ZAT18                           ------->GAMYB <---------YAB1<---------YAB1         <---------ZAT14                     <----------DOF2    ----------->GT1  <---------ICU4------ ---->REM1(2)   <---------ZAT14  --------->YAB1     <-----------GT1  <---------YAB1  <---------TOE2(3)   tagagcgagagagtagagtccactttcattttcagtcgtaatcgtttctttgattttcaacacacattgtaattattagttaatatttatgttaatttga  18203100                                                                                                  ---                                              ------>MYB46(1)                                   <----                                              ------>MYB83                                    <------                                      --------->AHL20(1)                                    ---------                                      <---------ARR11(3)                                    <--------                                 --------->AHL20(2)                                       --------->AHL20(2)                              --------->WOX13(1)                                        --------->AHL20(2)                             <---------AHL20(2)                                       <---------AHL20(2)                             --------->AHL20(2)                                       --------->AHL20(2)                            <---------ATHB12--------------->AGL15                   --------->AHL20(2)                        ------>ZmHOX2a(2)   <---------MYB111(1)                     <---------AHL20(2)                       <------ZmHOX2a(2)    <---------------AGL15                --------->AHL20(1)                       --------->CCA1(2)    <---------MYB59                   --------->AHL20(2)-----                      <---------AGP1  --------->ARR11(3)                <---------TOE2(3) <---------AHL20(2)                      --------->AGP1 --------->AHL20(2)                 ----------->GT1 <---------AHL20(2)                      <---------ARR14(2)   --------->ANAC55(2)     ----------->GT1--------->AHL20(2)<                      --------->ARR14(2)   ----------------->AGL2 --------->DAG2 <---------AHL20(1) - ---YAB1              --------->ARR11(3)   ----------------->AGL3---------->DOF2--------->AHL20(2)<-- --->ATHB12           <---------ARR11(3) <-----------GT1    ---------->DOF2 --------->AHL20(2)-------   ttagaagtttttaatacatgtcaagatctaataaatcaaatatatacctaatatagttaccaaaaagaaaagttaagaaaaaatatatatatatatatat  18203200  Previous    Next  AGI:  At4g39060.1    Description:  F-box family protein. similar to kelch repeat-containing F-box family protein [Arabidopsis thaliana] (TAIR:AT4G39756.1); similar to 117M18_27 [Brassica rapa] (GB:AAZ66946.1); contains InterPro domain Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043) Range:  from: 18202705    to: 18204628    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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