Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100        ------>ZmHOX2a(2)     <------ZmHOX2a(2)     --------->CCA1(2)    <---------ARR14(2)    --------->AGP1    --------->ARR14(2)    <---------AGP1    --------->ARR11(3)    <---------ARR11(3)                                                        --------->ANAC58 ----->GLK1(2)                                                                --------->ANAC58 --->TEIL                                        --------->ANAC46           ------>ZmHOX2a(1)      <- -->ANAC55(2)                                    --------->ANAC58         --------->YAB1           -- ---YAB1  ----------->GT1                 ---------->DOF2    --------->YAB1--------->TOE2(3)    ----- ---ANAC55(2)                      ------->TEIL  --------->ANAC58   <-----------GT1     <-------TEIL-   atctaagatctgaagtaaaatttgtgagaactagatgtatgtgtaaaagacacacaaatacaatcgttgttaactatcctaagctatacatacatgtata  18170500                                                                                              -------                                                                                            ---------                                                                                          --------->PCF2                                                                                         ------>NtERF2         --------->ARR11(3)    --------->ZAT14                                    <---------ICU4         <---------ARR11(3) <---------At5g28300                                  <---------YAB1  ----  <----------ID1           <-----------GT1                                       --------->ICU4<----- --------AHL20(2)  <---------ANAC58                              --------->MYB52(1)   --------->At4g35610 ------->AHL20(2)  <---------ANAC46                        --------->ALFIN1     <---------ARR11(3) -- ---->YAB1         <---------ANAC58                       <-------GAMYB       ----------->GT1<------- --------->DOF2   <---------TOE2(3)                       <---------ZAT2     <------ZmHOX2a(1)------>NtERF2   ataaaagacaagagcttattgacgtatagtcaccgtacttggacgaagatgcgattagggagttgggaaacggtcttgaggagataattgctgccccacc  18170600                                    ----------->GT1                                    --------->ANAC55(1)                              <------NtERF2                             --------->LBD16                          --------->At4g35610                       <------ZmHOX2a(2)                      --------->ARR14(2)                      --------->ARR11(3)                      <---------ARR11(3)                              --------->YAB1                      <---------ARR14(2)                            --------->ANAC58                     <---------GLK1(1)                              --------->ANAC58   <----------ID1    --------->GLK1(1)                          --------->ANAC58 -->MYB52(1)        ----------->ARR10  ------->TEIL             --------->ANAC58         --------->MYB52(1) >MYB46(3)        --------->LBD16   --------->ANAC58            --------->AtLEC2     --------->ANAC46 ----->LBD16     <---------ANAC46   --------->ANAC55(2)         --------->ANAC46     --------->ANAC58 ----LBD16       --------->LBD16    --------->ANAC58      <---------ZAT18            --------->ANAC58 -------->DOF2  <---------LBD16     <---------ANAC55(2)   --------->ZAT18          ---------->DOF2 --ALFIN1 <---------GLK1(2)<---------LBD16    --------->LBD16 <---------ALFIN1<---------ZAT6   ggagagcgacgagattgtcccggagatcagccggagacatgtaacttccgaagtcgatagcgctccacgcaagcatcgtagtcgtaaaagccatcggaaa  18170700                                                                                            ---------                                                                                           <---------                                                                                           <---------                                                                                          <---------O2                                                                                          ===========                                                                                          --------->ANAC55(2)                                                                                          <---------ANAC55(2)                                                                                          --------->ANAC58                                                                                          --------->ANAC46                                                                                          --------->TGA1a                                                                                          --------->ANAC58                                                                                          --------->O2                                                                                          <---------TGA1a                                                                                          --------->bZIP60(1)                                                                                       --------->ATERF1(1)                                                                                     <---------bZIP60(1)                                                                                     <---------PCF2                     ------>NtERF2                                                   --------->bZIP60(1)                    --------->DEAR3(1)                                              --------->RAP2.3(1)                    <---------ANAC46 ------>MYB46(1)     <---------ANAC58         --------->ALFIN1===                    <---------DEAR3(1)                   <---------ANAC58       --------->ALFIN1  ---                  <---------ATERF1(1)------>MYB83       <-------TEIL           --------->ALFIN1   ===                  ------>NtERF2     --------->MYB52(1) --------->GLK1(2)   --------->LBD16--------->bZIP60(2)                  --------->LBD16 <---------MYB52(2)   <-----------ARR10 --------->ZAT18  <---------bZIP60(1)                 --------->ANAC46 --------->MYB46(3)   <---------ARR14(2)<---------ZAT14 <-----------STF1                 <---------DEAR3(1)--------->DEAR3(1)  --------->ARR14(2)<---------LBD16 <-----------bZIP910(1)                <---------LBD16 ------->GAMYB<---------DDF1             --------->ALFIN1 ------>NtERF2        <-----------RAV1(1)    <---------MYB55(2)      --------->ARR11(3)--------->ZAT14<---------ALFIN1       <---------TOE2(3)       --------->MYB46(3)   <---------TOE2(3) <---------ANAC58 <------NtERF2     <---------AHL20(2)      <-----------GT1<---------ETT(2)          <---------ANAC46<---------RAP2.3(1)    <---------AHL20(2) <---------ANAC46     --------->ETT(2)       <---------MYB52(1)--------->PCF2    --------->AHL20(2)<------NtERF2--------->AtMYB61<---------TOE1(3) <---------ANAC58------>NtERF2   atggaatttaatgttgtctccggcgtcgtagtaaccaccaacgaggtcgacattgaggttcttgccatcgttgagtgcggagttgtggcgccacgtcatc  18170800                            <---------WRKY18(1)                           --------->WRKY45                           --------->WRKY38(1)                           --------->WRKY12                          --------->DOF5.7(2)                         <-------GAMYB                        ------>ZmHOX2a(2)                        ===========================HOX2a_HOX2a                       ============================HOX2a_HOX2a                       <------ZmHOX2a(2)                                                          <--                      <---------ARR14(2)                                                       <-----                      --------->ARR14(2)                                                      <------MYB83               --------->GLK1(1)                                                              <------MYB46(1)               <---------GLK1(1)                                                             --------              <---------ARR11(3)                                                            <--------P --------->ZAT14      <---------ARR11(3)                                                  <---------MYB46(3) >TGA2(2)     --------->ARR11(3)                                                          <------MYB83 --HVH21      --------->ARR14(2)                                                          --------->MYB55(2) --TGA1       <---------ARR14(2)                   <----------DOF2                        <------MYB46(1) ================================MYC_MYB      <---------WOX13(1)                         <---------AtMYB61 ==============================HOX2a_HOX2a   <---------ARR14(2)                         <---------MYB52(1) --->ZmHOX2a(1)--------->CCA1(2)             --------->ARR14(2)                        <-------GAMYB =============================HOX2a_HOX2a   <------ZmHOX2a(1)                         <---------MYB46(3)   ctctgttctcttgggagatatccagatcgttgaccttcgaagaagaggattgactttgtgagagcatcggagtagtcgtgagaaatcgtcgttggtagga  18170900                                                                  --------->CCA1(2)                                   <----------DOF2                <---------At4g35610                                  <---------ANAC58           <---------YAB1                   <------       <------ZmHOX2a(1)          <---------ANAC58    <---------TOE1(3)                     ---------    <------ZmHOX2a(1)        --------->MYB52(1)  <----------DOF2  --------->At4g35610     --------->AHL20(2) ----ZmHOX2a(1)            --------->MYB46(3)  --------------->AGL15                      <---------- -ZmHOX2a(1)         --------->ANAC58      *TSS<---------------AGL15                    <-----------TBP ->MYB111(2)         --------->ANAC58--------->ATHB12 <---------TOE2(3)              <-------TEIL  <-   ggatgaggaggataactataaacgagcaaaccaatggcttcattgttttctcttttagggtttatgagagatgactaaataagacgatgcatatatataa  18171000                                                            <---------CCA1(2)                                                        <---------AHL20(2)              --------->YAB1 ---AHL20(2)                    --------->LBD16       <---------AHL20(2)         --------->ATHB12 --- -->TBP                        --------->ANAC46   <---------CCA1(2)             <---------YAB1    <-- -TBP                         <---------LBD16 <---------ANAC46 >>>>>>>>>RAP2.2  --------->ICU4------- ---------DOF2            <----------DOF2<-----------GT1--------->AHL20(2)------>ZmHOX2a(1)  <-------   acttttattcgatttttttctatggaaactttcccgcatgttttaactccttgtatatttttatatctaaactttcctcaccatgatttatcacaatcaa  18171100                                                       <---------ANAC58                         -----                                                --------->AHL20(1)                              -----                                                <---------ARR11(3)                             ------ <----------DOF2                       <---------AHL20(2)                                      <----- <---------DAG2                        --------->AHL20(2)        <----------DOF2        ---------->DOF2 ------>ARR11(3)                   <---------TOE1(2)   <---------ANAC46               >>>>>>>>>GATA-1 -------ARR11(3)                  ------>ZmHOX2a(1)    <---------ANAC58         ------>ZmHOX2a(2) <-- -->YAB1                       ---------->ID1   --------->ARR11(3)   ----------------->AGL1   <------ZmHOX2a(1) --ATHB12             <---------MYB52(1)    ----------->GT1   <-----------GT1   =====================HOX2a_HOX2a   gaactttttgttctctgttaaatcgttttttttgtcctagtttaaatggatatattggcgagtttttcttttccaaatttgatctatagataaagaggat  18171200                                            <-----------GT1                                       <--                                       <---------AHL20(1)                                         ---                                    --------->AHL20(2)                                            ---                                   --------->YAB1                                         <---------ARR11(3) ---->GLK1(1)                   ----------->GT1                                           <---------ARR11(1) ---->CCA1(2)                  <----------ID1                                             --------->ARR14(2) --->ARR14(2)                  ----------->GT1                                            <---------ARR14(2) ----ARR14(2)              ---------->DOF2<---------YAB1                <-----------GT1  <---------CCA1(2) -------ANAC55(2)  --------->MYB52(1)  --------->AHL20(1)        --------->At4g35610<-----------GT1--   atgtaaacttggcaaaaaaaaaaacgaatgaaagcgataaaaatattatcgagtcttataaaacatcatctaaattaccacaaataaaaccatatctgca  18171300                                                                     <---------ANAC55(2)                                                                 --------->YAB1                                                                <---------YAB1                                                               --------->AHL20(1)                                                               <---------AHL20(2)                                                               --------->AHL20(2)                                                              --------->YAB1                                                             <---------YAB1                                                             --------->ICU4                                                           --------->YAB1                    --------                                                           <---------ICU4                    --------                                   <---------AHL20(2)     <---------YAB1                  <---------ICU4                                   --------->AHL20(2)     --------->ICU4                  --------->YAB1       <-----------GT1             <---------AHL20(1)    <---------AHL20(2)              <---------AHL20(2)   --------->AHL20(2)           <---------AHL20(2)       --------->AHL20(2)          <---------YAB1  <---------AHL20(2)          <---------AHL20(2)         <---------AHL20(1)          <---------AHL20(2)  --------->AHL20(2)      --------->ANAC55(2)           --------->YAB1             <---------ICU4 -------ATHB12            <---------ANAC55(2)          <---------YAB1--------->ANAC55(2) --------->AHL20(2) ------>AHL20(2)         <-------TEIL              <---------ANAC55(2)         <---------AHL20(2)---- ------>ICU4        --------->AHL20(2)             --------->ANAC55(2)         --------->AHL20(2)<--- ------->AHL20(2)   <---------AHL20(2)            <-------TEIL<---------ICU4<----------DOF2  <-------   ataaataattttctgtttgaatataaatacatattattttattttttaaaaatacatattataattataatatgtattcttttaatttttattaattata  18171400  Previous    Next  AGI:  At4g38990.1    Description:  pseudogene of a glycosyl hydrolase family 9 protein, endo-1,4-beta-glucanase precursor Range:  from: 18168670    to: 18170943    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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