Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                               --------------->AGL15   ------>MYB83                              <---------------AGL15   ------>MYB46(1)                    <-----------GT1 <---------MYB59                  <---------ARR14(2)               <------MYB46(1) ---------ANAC55(2)               <---------ARR11(3)     --------->ICU4        --------->GLK1(1)    - -------->ANAC55(2)               --------->ARR11(3)   ---------->DOF2    --------->At4g35610   ----- ->MYB46(1)<------MYB46(1)      ----------->ARR10  <---------TOE2(3)   ---------->DOF2        ------- ->MYB83   <------MYB83     --------->At5g28300  ---------->DOF2   <------MYB83<---------GLK1(1)----- ---MYB59 --------->MYB59  ----------->GT1  <---------------AGL15  <---------ANAC46 --------->At4g35610 ->ANAC55(2)              <---------DEAR3(1)--------------->AGL15 --------->MYB46(2)<---------At4g35610 ->ANAC46<--------P      <---------ORA47(1)----------------->AGL3 --------->MYB111(2)      >>>>>>>>>TBF1   atacctatcttgtaggtcccttcaatggacggtgaagatattactcccttataaaggaaaagatgagtttggtgaaagcagaattcttctgaagaagaaa  18152300                                                                                             <------NtERF2                                                                                            ---------                                                                                          <---------LBD16                                                                                     <---------WRKY38(1)                                                                       ---------->DOF2   ------->GAMYB          <---------ARR11(3)   ----------->GT1                <------ZmHOX2a(2)      <---------WRKY12 -------->MYB52(1)     ------->MYC3                     --------->GLK1(2)           --------->SPL7<-- ---->ANAC58           <-------MYC3                     --------->ARR14(2)        --------->LBD16 <-- --->DOF2 --------->ARR11(3)   <----------ID1           <---------ARR14(2)    <-----------GT1<------- ---->ANAC58------>ZmHOX2a(2)---------->DOF2           --------->RVE1(1) ----------->GT1--------->ANAC46   gcaaaccgaattgatcttgtaaacatgtggaaaaagaaaaactaaaacacaaacaaaaaatccgatctaatcggaaagataaaccggacaacgccggaag  18152400                               ------>ZmHOX2a(2)                              <------ZmHOX2a(2)                              --------->CCA1(2)                             --------->AGP1                             <---------AGP1                             --------->ARR14(2)                             --------->ARR11(3)                    --------->AHL20(2)                    <---------AHL20(2)                   --------->AHL20(1)      <---------MYB52(1)     <---------ARR14(2)                                         <---------YAB1    ----------->GT1<---------AHL20(1)                                                 --------->ANAC55(2) >LBD16 ---------->DOF2      <---------ARR11(3)                                       <---------ANAC55(2) -------DAG2       <---------AHL20(2)                                                <-------TEIL --------DOF2      --------->AHL20(2) <---------TOE2(3)                             --------->CCA1(2) --MYB52(1) ----------->GT1 <---------CCA1(2)           ---------->DOF2        ---------->DOF2   ctttatccgttaaaacgaaaatttatttgtagatctgatttagattagaaactataaacaaagtagaaagtttctctctctcaaagatacatgatagaga  18152500                                                           <---------------AGL15                                                           --------------->AGL15                                                <-------GAMYB                                               --------->MYB52(2)                      --------------                                       ------->TEIL       ----------------->AGL3       <-------------                          <---------YAB1       <---------MYB46(3)                     --------->ANAC55(2)                         <---------TOE2(3)   <---------ANAC46         --------->MYB52(1)                 <-----------GT1      <---------AtLEC2    ===========================================             <---------ICU4     <---------TOE2(3)         ----------------->AGL1--------->ICU4     --   agagagagaaactaatatttagccatttatgtttaagaatgcatgttgtttgttgtctgtgccaaattttgaaaacggtgcgatgtttacttaatgaaga  18152600                    ------>MYB83                    ------>MYB46(1)               ------>MYB46(1)               ------>MYB83               --------->MYB52(1)             <---------MYB59              ----------->GT1          ------>MYB46(1)                 <------MYB46(1)          --------->MYB52(1)              <---------MYB46(3)                                        -          ------>MYB83                    <------MYB83                                              -        <---------MYB52(2)             <------------CBF                                             <      --------->SPL7--------->MYB52(1)--------->ATHB12                                              <     --------->ARR14(2)       <------NtERF2                                                         <    <---------MYB52(1)       <---------RAP2.6(3)                                                    <    <---------SPL7<---------MYB59    <---------YAB1                             <----------DOF2    <-   <---------DEAR3(2) --------->DEAR3(2)<---------WOX13(1)              ------->GAMYB<---------HSFB2a(2)  <---------------AtSPL3    --------->RAP2.3(2)                         --------->DEAR3(1)--------->ANAC58 ->AGL15<---------MYB46(2)  --------->DEAR3(1)                          --------->RAP2.6(2)       --- --AGL15<---------MYB59    --------->DEAR3(2)  ---------->DOF2         --------->MYB46(3) --------->ANAC58 ==MADS_MADS--------->DEAR3(2)--------->ATERF1(1)                 <-----------GT1*TSS--------->HSFB2a(2) ------->GLK1(2) --------->DEAR3(2)<----------DOF2    --------->GLK1(2)<------------AtMYB77       <--   gaagccggtaccgaaccgaaccgaaccgagccgtcgtctttgattggttaaaagaaattcttgaaaatttacaaccgcctctcttttctgaaacggaaga  18152700           --------->GLK1(2)                                     <---------YAB1       <------ZmHOX2a(1)                                         <---------AHL20(2)    <-----------RAV1(2)                                          --------->AHL20(2)    <---------LBD16                                      <---------ANAC46  ------>ZmHOX2a(2)                                   ------>ZmHOX2a(2) =============HOX2a_HOX2a                            --------->HSFB2a(1) --------->GLK1(1)                                   <---------GLK1(1) <---------GLK1(1)                                   --------->GLK1(1) <------ZmHOX2a(2)                                   <------ZmHOX2a(2) -------->ARR11(3)                                  <---------ARR14(2) -------->ARR14(2)            <---------ICU4        --------->ARR11(3) ---------ARR14(2)            <---------AHL20(2)    --------->ARR14(2) ---------ARR11(3)         --------->YAB1           <---------ARR11(3)                   <-----------HVH21 -----------ARR10        --------->AHL20(2)         <-----------ARR10                    --------->At5g28300 ---------AGP1<---------YAB1 --------->AHL20(2)     <---------ARR11(1)               ------------>MYB.PH3(1) -----ZmHOX2a(1)       <----------DOF2             <---------CCA1(2)                 --------->MYB52(1) ------>HSFC1(2) --------->GLK1(1)                 <---------ARR14(1)          <---------ANAC58 -------HSFC1(2) <---------GLK1(1)    ---------->DOF2<---------HSFB2a(1)       <---------ANAC58   aggatctcaggagtttctgatttctcttttaataaataccaaaagtcaaaatcggatcttcgtgtatataattgttcatttccttgaaaacggttacaga  18152800                                                                                       --------->ANAC46                                                                                       --------->ANAC58                                                                                       --------->RRTF1(3)                                                                                       --------->DREB2C(2)                                                                                       >>>>>>>>>AtERF-2                                                                                       >>>>>>>>>AtERF-5                                                                                       >>>>>>>>>AtERF-7                                                                                       >>>>>>>>>AtERF-1                                                                                       >>>>>>>>>AtERF-4                                                                                       >>>>>>>>>AtERF-3                                                                                       --------->ANAC58                                                                                       --------->DEAR3(1)                                                                                       --------->RRTF1(2)                                                                                       --------->RAP2.3(3)                                                                                       --------->RAP2.3(2)                                                                                       --------->ATERF1(2)                                                                                       --------->RAP2.6(2)                                                                                      --------->ATERF1(1)                                                                                      --------->RAP2.3(1)                                                                                      <------NtERF2                                                                                      --------->ORA47(2)                                                                                      --------->DEAR3(2)                                                                                      --------->RRTF1(1)                                                                                     --------->ZAT2                                                                                     --------->At4g35610                                                                                     <---------At4g35610                                                                                     ------>NtERF2                                                                                     <---------ATERF1(1)                                                                                     --------->ABI4(2)                                                                                    --------->ARR14(2)                                                                                   <------NtERF2                                                                                   --------->ATERF1(1)                                                                                  <---------ATERF1(1)                                                                                <---------LBD16                                                                 --------->ANAC58 --------->LBD16                                                                 --------->ANAC58--------->DEAR3(1)                                                                 <------NtERF2 --------->MYB52(1)                                                       --------->YAB1         --------->DEAR3(1)                                                       <---------ICU4         ------->GAMYB ---------                                                      <---------YAB1         <------------AtMYB77                                                      --------->ICU4         --------->MYB46(3)                                                     --------->AHL20(1)      --------->DEAR3(2)                                                     <---------AHL20(1)     -------->P--------->ERF1                                                     <---------AHL20(2)    --------->MYB52(1)                                                     --------->AHL20(2) --------->ANAC58 <------NtERF2                                        --------->ARR11(3)    <---------ZAT18<---------MYB55(2)                                        <---------ARR11(3)<---------ICU4--------->ANAC58<---------RAP2.6(3)                                ------>ZmHOX2a(2)   --------->YAB1--------->DEAR3(1)<---------ARR14(2)                              --------->ARR11(3)   <---------ATHB12     --------->ANAC46------>NtERF2 <---------TOE1(3)            <---------ARR11(3)   <---------ATHB51   ---------->DOF2<---------RAP2.3(1) <---------TOE2(3)         <---------WOX13(1)  --------->LBD16--------->ZAT18--------->ATERF1(1)   attagggttttgtttcttctctctcgccgattgatcttgaaatgtcttccccaattataattagggcaccgaagaagcaaccgccggagccgccatgtct  18152900                                                                                                    <                                                                                                   --                                                                                                   --             --------->LBD16                                                                       <-            --------->LBD16                                                                        ==           --------->LBD16                                                                         <-           <---------HSFB2a(2)                                                                <------           --------->HSFB2a(2)                                                          <---------ARR14(2)          <---------LBD16                                                               --------->ARR14(2)  <---------ANAC58                                                                   <---------ANAC58  <---------ANAC58        <------NtERF2                                              <---------ANAC58 >O2<---------MYB52(1)  <---------DEAR3(1)                <-----------GT1 <---------TOE1(2)   <------ZmHOX2a(2)   gatttcgttactccccgaagaaatcgtcgtcgatatcgtagcccgtgtccctagatgctattaccctactctctcccaagtttcaaggcgtttccgatca  18153000                                     <---------LBD16                                    --------------------->WRI1                               --------->HSFB2a(1)         <---------LBD16       <---------HSFC1(2)     <----------DOF2           --------->HSFC1(2) ---------->ID1               <------ZmHOX2a(2) -----------HVH21            --------->ARR14(2) ------->O2                  --------->ARR11(3)                                                 ----- ------->TGA1a               <---------ARR14(2)                                             --------- --------TGA1a        --------->ANAC46                                          <------ZmHOX2a(2) ===============bZIP_DOF --------->CCA1(2)    --------->ANAC46                 <---------ARR11(3) --------O2       <-----------GT1------>ZmHOX2a(1)                         ---------->DOF2  <-------- ---ATHB12 --------->LBD16   <---------ARR11(3)               --------->REM1(1)--------->ARR11(3) <--   ctcgtcgcttctccggagatttacaagagacgatccttcttcggatgcacagaacaatgtctctacatcgcaatctccaaagatcaaacctctgatatcc  18153100                                                  ------>NtERF2                                                  --------->ABI4(1)                                                 --------->DREB2C(2)                                                 ------->GAMYB                                                 --------->DEAR3(1)                                                 <---------ALFIN1                                                --------->DEAR4(2)                                               --------->ABI4(1)                                              <---------ALFIN1                          ------->GAMYB       --------->AtMYB61                        >>>>>>>>>MYB98        --------->DEAR3(1)                       ------>MYB83          --------->MYB46(3)                       --------->MYB52(1)    --------->ATERF1(1)                       ------>MYB46(1)       <------NtERF2                      --------->MYB55(1)     <---------ABI4(2)                     <---------MYB59        ------>NtERF2                  --------->GLK1(1)         <---------ATERF1(1)               --------->LBD16             --------->PCF2                        <---------ALFIN1              <---------ANAC46             <---------TCP20                     <---------ALFIN1              --------->ATERF1(2)          <---------TCP16(1)             <---------ARR14(2)              --------->HSFB2a(2)        --------->LBD16                  --------->ARR14(2) ---->ATHB12  --------->ETT(1)           ------>NtERF2                <-------TEIL >GLK1(1)     <---------HSFB2a(2)        <---------ATERF1(1)    ----------->RAV1(2) -GLK1(1)    <---------LBD16            --------->ANAC46   <---------ICU4<---------CCA1(2) -------MYB52(1)<------NtERF2          <---------LBD16    <---------YAB1 <---------GLK1(1) ------>ZmHOX2a(1)   attggtttactctgtgccggaaacctaacggacaacaattctccggcaccaccgcctctgatcatcgcctggtacatatccccactctccctcctatgcc  18153200  Previous    Next  AGI:  At4g38940.1    Description:  kelch repeat-containing F-box family protein. Identical to F-box/Kelch-repeat protein At4g38940 [Arabidopsis Thaliana] (GB:Q9SVJ9); similar to kelch repeat-containing F-box family protein [Arabidopsis thaliana] (TAIR:AT3G10510.1); similar to 117M18_27 [Brassica rapa] (GB:AAZ66946.1); contains InterPro domain Kelch repeat type 1 (InterPro:IPR006652); contains InterPro domain Kelch-type beta propeller (InterPro:IPR015915); contains InterPro domain Cyclin-like F-box (InterPro:IPR001810); contains InterPro domain Kelch related (InterPro:IPR013089); contains InterPro domain Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043) Range:  from: 18152681    to: 18154108    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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