Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                          --------->ANAC55(2)                                                                                      --------->MYB52(1)                                                        <------MYB46(1)              <---------SPL7                                                        <------MYB83       ------->GAMYB<---------ANAC55(2)                                                       --------->MYB59    --------->MYB46(3)                        ----------->GT1         --------->MYB52(1)       <---------TOE2(3)  ---------                      ----------->GT1  --------->At4g35610--------->WRKY18(1)<------ZmHOX2a(2)     --           --------->YAB1           <---------ANAC58 --------->ARR14(2) <-----------GT1<---------LBD16          ----------->GT1           <---------ANAC58 <---------ARR14(2) --------->MYB52(1)  <--------   aattcgaagaaaatgaaaattgtagagagaaaaacttggcatgctgaaattaacagataggtcaagaacacgattaacgatcgaagacttacggatttca  18146800                                             --------->ARR14(2)                                             <---------ARR14(2)                                          <---------TOE2(3)                                       ------>ZmHOX2a(2)                                     <---------ARR11(3)                                     --------->ARR14(2)                                     <---------ARR14(2)                                     --------->AGP1                      --------->ANAC58--------->CCA1(2)                    --------->MYB52(1)=============HOX2a_HOX2a                 --------->ANAC58    --------->ARR11(3)         <------ZmHOX2a(1)    <---------HSFB2a(2)        --------->LBD16------->GAMYB <---------AGP1      <-----------RAV1(2) --------->GLK1(1) <------ZmHOX2a(1)    <-----------HVH21 --------->ANAC58<------ZmHOX2a(2) ------->TEIL    --------->ANAC58  ----------->ARR10                                          <------ >GLK1(1)====================================HOX2a_HOX2a                                   --------->ANAC58 ----->GAMYB     --------->ANAC46---------->DOF2                                  --------->ALFIN1 -GLK1(1)=====================================HOX2a_HOX2a  *TSS       <-----------RAV1(1)  --------->ANAC58   acgagccttcaggagaaacaagcaacggaaatcgagaaagatctgaggatacttggaaatggtgtctgtgtaatgtggcaagaagtggaagacgagccag  18146900                                                                    --------->ATHB51                                                                   --------->ICU4                                                                   <---------YAB1                      <-----------GT1                         ----------->GT1              <-----------GT1                         --------->ANAC58        ------------>CBF                              --------->ANAC58                             -- -----RAV1(2)--------->AHL20(2)                       --------->ANAC46                  ----------->GT1   gtactctcggttcaatttactaatatacccttgtcttaaaactgctaaacgagagcaagcaagaaggttattattgtctatccatcttactcgtaaaaat  18147000                                              <---------YAB1                   <---------ANAC46                                            --------->CCA1(2)              --------->ZAT18                                           <---------ARR14(2)       <---------YAB1                                           <---------ARR11(3)      --------->KAN4(2)                                           --------->ARR14(2)     --------->KAN4(1)                                          ==============================HOX2a_HOX2a --------->ATHB12                                --------->ANAC58                 <------ZmHOX2a(2)--------->SPL7                                --------->ANAC58          <-----------RAV1(1)<---------PCF2         -                                --------->ANAC46--------->ARR11(3)<---------KAN4(1)<---------YAB1   < -------->DOF2              --------->YAB1<------ZmHOX2a(1)   <---------MYB46(3)<---------SPL7  -----   gcaaagacgtttctgtttcaatctctccaaatataagccaaacaggatatgattttggttctggtggatcattctagtgggccgtatgatgggcctaaga  18147100                                                      <---------ZAT14                                                      <---------ZAT18                                                      --------->ZAT18                                                   --------->ALFIN1                                                   -------------->OsCBT                                                 <---------ANAC58                                                 --------->O2                                                 <---------ANAC46                                                 ====================bZIP_DOF                                                 <---------ANAC58                                            ------>ZmHOX2a(2)                                           <------ZmHOX2a(2)                                          <---------ARR14(2)                                  --------->LBD16=======================MYC_MYB                                <---------LBD16  <---------TGA1a                              -------                              --------->ARR14(2) --------------------->WRI1                  <-------                              <---------ARR14(2) <---------O2                              --------->WOX13(1)                            ----------->ARR10    --------->TGA1a                         <---------YAB1                       <---------ANAC46   --------->ARR11(3)                             ------------                       <---------ANAC55(2)<---------ARR11(3)                            --------->TOE2(3)         --------->GLK1(2) <--------P======================MYC_MYB              <---------ARR11(3)      <---------MYB52(2)   ================================MYC_MYB<---------REM1(1)    <---------ICU4 -------->DAG2        <---------LBD16<--------P------>NtERF2    <-------GAMYB   --------->ARR11(3) ---------TOE2(3)   --------->ARR14(2)    --------->ARR14(2)   <-----------RAV1(1)     --------->YAB1 ---->YAB1          <---------ARR14(2)   <---------GLK1(1)<----------DOF2      <---------CCA1(2)   <-   ataaggcaactaatctgggtcgaatacgggtagacccgggttgagatcccgacgtgtgcgcttcgctgttgtagtagtagtatatctcatcatcaatcag  18147200                                              ------>ZmHOX2a(2)                   --------->ANAC46                                             <------ZmHOX2a(2)             --------->ALFIN1                                             --------->CCA1(2)            <---------MYB52(1)                                            --------->ARR14(3)           --------->LBD16                                            --------->ARR11(3)       <---------ARR14(2)                                            --------->AGP1           --------->GLK1(2)                                            <---------ARR11(3)       --------->ARR14(2)                                            <---------ARR14(2)      --------->ARR14(2)                                            --------->ARR14(2)      <---------GLK1(2)                                           --------->GLK1(1)        <---------ARR14(2) -->YAB1<---------LBD16                   ----------->ARR10        --------->At4g35610 --ATHB12   <---------ARR14(2)      ------->GAMYB               <------ZmHOX2a(2) --------->ANAC58 >CBF*TSS   --------->ARR14(2)   --------->MYB52(1)    ---------->DOF2 <---------LBD16          <---- ---------DOF2            <---------CCA1(2)<---------GLK1(1)  <---------GLK1(1)   --------->ANAC58   gcttttgagcctcggaaactcaatccttgtatattcaacggagagagatctgcgagagaaagagagatcagattccggtgttccaaggaagcacatattt  18147300                                                                                ------>NtERF2                                                                                <---------ZAT18                                                                              --------->ATERF1(1)                                                                              <---------DEAR3(1)            ----------->RAV1(2)                                              ------>NtERF2       --------->ARR14(2)                                                    --------->At4g35610       <---------GLK1(2)                                                     <---------At4g35610       <---------ARR14(2)                                                 ------>NtERF2     --------->LBD16                                                      <---------ATERF1(1)    --------->HSFB2a(2)                                                  --------->DEAR3(1)    <---------HSFB2a(2)                                                 --------->ATERF1(1)  --------->CCA1(2)                                                     <------NtERF2  <------ZmHOX2a(2)                                                    --------->At4g35610 --------->ARR11(3)                                                    <---------At4g35610 --------->AGP1                                                  <---------ANAC58 <---------ARR11(3)                                              <---------ANAC58 --------->ARR14(2)                  <---------ANAC46       <---------At4g35610 --------->ZAT14     < <---------ARR14(2)     <---------ETT(2)            <----------DOF2    <---------ATERF1(1)         <- -----AHL20(2)          --------->ETT(2)       <---------At4g35610    <---------DEAR3(1)          ---   taagatccagaatcgcctgagagatgtctaccttcagtggcgatgagaccgctcctttcttcggcttccttggcgctgccgctgcgctcgtcttctcatg  18147400                                                                                 ---------->ID1                                                                       <---------ANAC46                                                                       <---------ANAC58       ------>ZmHOX2a(2)                                                                       <---------ANAC58      --------                                                                   ------>ZmHOX2a(2)        <--------                                                                 --------->ARR11(3)         ---------                                                           <---------ZAT14      <-------GAMYB<------- -----------GT1                              <---------TOE1(2)   <---------ARR11(3)     --------->YAB1 --------CCA1(2)                           <----------DOF2 --------->ZAT14     <---------MYB46(3) ---->TEIL       --------->YAB1     <----------DOF2        --------->ZAT18     --------->MYB52(2)   tatatccatctatactctcttataatctccatcttcttcttttctctttggttctgaattgttcactgatcttgtgtgtgtttgttgttctcatgatctc  18147500                                                    <-------GAMYB         <----------DOF2                           --------->ALFIN1        <---------ANAC46                           <-----------RAV1(1)        <---------ANAC58                      ------>ZmHOX2a(2)        <---------ANAC58              --------->ZAT18 ---------->DOF2                      --------->ZAT14       <---------YAB1 --------->HSFB2a(1) ->GLK1(1)              ------>ZmHOX2a(2)    <------ZmHOX2a(2)             <---------HSFB2a(1) -ARR11(3)            --------->ARR14(2)    --------->ARR14(2)             <---------HSFC1(2) >ARR11(3)            <---------ARR14(2)    <---------ARR14(2)<---------ARR11(3)       <---------GLK1(2) --GLK1(1)       <----------DOF2      <---------ZAT14       --------->ICU4 --------->HSFC1(2)   cctcaaagttgcttttgtgctttagatcggccctgagaagttcaccgatctgtgtgttgctcatgatttttcttagaaatttctctctagatttgtttag  18147600                                                          <----------DOF2                                                        <---------YAB1                            <--                     <---------AHL20(2)                <---------ARR11(3)                      ------                    --------->AHL20(2)     --------->GLK1(2)                         <---------ARR14(2)                    --------->YAB1       --------->HSFB2a(1)                      --------->HSFB2a(2)                   <---------YAB1        --------->HSFC1(2)                       <---------HSFB2a(2)             <---------ZAT14             <---------HSFC1(2)                    <---------YAB1 <------             --------->ZAT14             <---------HSFB2a(1)      <---------At4g35610--------->ARR14(2)      <---------bZIP60(1)        <----------DOF2       --------->ARR11(3)  <---------GLK1(2)  -------      --------->bZIP60(1)        <---------DAG2   <---------AHL20(2)   <------ZmHOX2a(2) --------->ZAT18   gctaagcgatatcactgaactattatatgtctctccttttcgaaaattctagtttattatctttagtcagtggatcaaattcttatggaactgctctacg  18147700  Previous    Next  AGI:  At4g38910.1    Description:  ATBPC5/BBR/BPC5/BPC5 (BASIC PENTACYSTEINE 5); DNA binding / transcription factor. similar to ATBPC4/BBR/BPC4/BPC4 (BASIC PENTACYSTEINE 4), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT2G21240.1); similar to ATBPC4/BBR/BPC4/BPC4 (BASIC PENTACYSTEINE 4) [Arabidopsis thaliana] (TAIR:AT2G21240.2); similar to GAGA-motif binding transcriptional activator [Populus trichocarpa] (GB:ABV53914.1); contains InterPro domain GAGA binding-like (InterPro:IPR010409) Range:  from: 18144519    to: 18146859    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At4g38920.1    Description:  ATVHA-C3/AVA-P3 (vacuolar-type H(+)-ATPase C3); ATPase. Identical to Vacuolar ATP synthase 16 kDa proteolipid subunit 1/3/5 (AVAP5) [Arabidopsis Thaliana] (GB:P59227;GB:Q39037;GB:Q39038;GB:Q39039;GB:Q42424;GB:Q96298); similar to vacuolar ATP synthase 16 kDa proteolipid subunit 5 / V-ATPase 16 kDa proteolipid subunit 5 (AVAP5) [Arabidopsis thaliana] (TAIR:AT2G16510.1); similar to AVA-P1 (vacuolar H+-pumping ATPase 16 kDa proteolipid subunit 1), ATPase/ hydrogen ion transporting ATPase, rotational mechanism [Arabidopsis thaliana] (TAIR:AT4G34720.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN78114.1); contains InterPro domain ATPa Range:  from: 18147205    to: 18149261    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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