Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                        <--------------                                                                                      ---------------          --------->AtMYB61                                                          ----------------          <---------ALFIN1          --------->ZAT14                                  ----------------         --------->MYB46(3)         <---------ZAT14                             ----------->GT1       <---------ALFIN1            ------->GAMYB                           ----------->HVH21       --------->ANAC46          <---------At4g35610                       ----------->TGA1      --------->MYB46(3)         --------->At4g35610                     <---------At4g35610    <---------ZAT18         <----------DOF2                              --------->At4g35610 ------>YAB1          ------>ZmHOX2a(1)                       ----------->GT1 <---------ANAC46   tcatactgcccaccactctccatcctcttactttcaactgcaatggagaaattgatatcaaacattgtgaaactaggctgacgagtaactaaaaacagaa  18146500                                                                            <------NtERF2                                                                            --------->At4g35610                                                                       --------->ANAC46                    <---------HSFB2a(2)                                --------->TGA1a          -----                    --------->HSFB2a(2)                                --------->ANAC58         -----                    <---------ANAC55(2)                        --------->ARR14(2)      --------->AtLEC2                    --------->ANAC55(2)                        <---------ARR14(2)      ------>MYB83 -AGL15          --------->ARR14(2)             <---------HSFB2a(2)    --------->ANAC58------>MYB46(1) >AGL15          <---------ARR14(2)        <---------AHL20(2) <---------CCA1(2)   <-----------GT1   < ->AGL3 --------->YAB1            <-----------GT1        <---------CCA1(2)  <---------At4g35610 ----- ->AGL2<---------ATHB12     <-------TEIL  --------->AHL20(2)--------->YAB1<---------WRKY12    -------   atactccaaatcataagcagttccataacatacatttaacccaaataaatcgagaaatcgtatcatatcccacaagtcagcgtaataccatccaaaccaa  18146600                                                                                <---------At4g35610                                --------->LBD16                                 --------->GLK1(1)                               <---------LBD16                                  <---------GLK1(1)                              <---------LBD16                                   <---------ZAT2                           --------->CCA1(2)                           ------->GAMYB                           --------->ARR14(1)                         --------->DEAR3(1)                          --------->ARR14(2)                          --------->MYB46(3)                          --------->ARR11(1)                        --------->MYB52(1) ---->MYB52(1)          ----------->ARR10                        --------->ANAC58     --------->LBD16 ->MYB83<<<<<<<<<<<<<<<<<LFY<-------TEIL                         --------->ANAC46    <---------HSFB2a(2) ---------------------WRI1<---------ARR14(2)                     --------->ANAC58    --------->HSFB2a(2) ->MYB46(1)         --------->ANAC58                      --------------->AGL15 --------->ZAT2 -->AtMYB61         --------->ANAC58          <---------ZAT6   ---------->DOF2  --------->At4g35610   acgatgaagaaaacaatggagcaagtaagatacgcgggaacatatatagagttcgaatttcaagttaaagcaacgacgagagagctcccagaagaaccaa  18146700                                                                                        <---------ANAC55(2)                                                                                      --------->MYB52(1)                                                        <------MYB83                 <---------SPL7                                                        <------MYB46(1)    ------->GAMYB--------->ANAC55(2)                                                       --------->MYB59    --------->MYB46(3)                        ----------->GT1         --------->MYB52(1)       <---------TOE2(3)  <--------                      ----------->GT1  --------->At4g35610--------->WRKY18(1)<------ZmHOX2a(2)     --           --------->YAB1           <---------ANAC58 --------->ARR14(2) <-----------GT1<---------LBD16          ----------->GT1           <---------ANAC58 <---------ARR14(2) --------->MYB52(1)  ---------   aattcgaagaaaatgaaaattgtagagagaaaaacttggcatgctgaaattaacagataggtcaagaacacgattaacgatcgaagacttacggatttca  18146800                                             <---------ARR14(2)                                             --------->ARR14(2)                                          <---------TOE2(3)                                       ------>ZmHOX2a(2)                                     --------->ARR11(3)                                     --------->ARR14(2)                                     <---------AGP1                                     --------->AGP1                      --------->ANAC58--------->CCA1(2)                    --------->MYB52(1)<------ZmHOX2a(2)                 --------->ANAC58    <---------ARR11(3)         <------ZmHOX2a(1)    <---------HSFB2a(2)        --------->LBD16------->GAMYB <---------ARR14(2)      <-----------RAV1(2) --------->GLK1(1) <------ZmHOX2a(1)    <-----------HVH21 --------->ANAC58=============HOX2a_HOX2a ------->TEIL    --------->ANAC58  ----------->ARR10                                          <------ -GLK1(1)====================================HOX2a_HOX2a                                   --------->ANAC58 ----->GAMYB     --------->ANAC46---------->DOF2                                  --------->ALFIN1 >GLK1(1)=====================================HOX2a_HOX2a  *TSS       <-----------RAV1(1)  --------->ANAC58   acgagccttcaggagaaacaagcaacggaaatcgagaaagatctgaggatacttggaaatggtgtctgtgtaatgtggcaagaagtggaagacgagccag  18146900                                                                    --------->ATHB51                                                                   <---------YAB1                                                                   --------->ICU4                      <-----------GT1                         ----------->GT1              <-----------GT1                         --------->ANAC46        ------------>CBF                              --------->ANAC58                             -- -----RAV1(2)--------->AHL20(2)                       --------->ANAC58                  ----------->GT1   gtactctcggttcaatttactaatatacccttgtcttaaaactgctaaacgagagcaagcaagaaggttattattgtctatccatcttactcgtaaaaat  18147000                                              <---------YAB1                   <---------ANAC46                                            --------->CCA1(2)              --------->ZAT18                                           --------->ARR14(2)       <---------YAB1                                           <---------ARR11(3)      --------->KAN4(2)                                           <---------ARR14(2)     --------->KAN4(1)                                          <------ZmHOX2a(1)      <------ZmHOX2a(2)--------->SPL7                                --------->ANAC58              <---------MYB46(3)<---------SPL7                                --------->ANAC46          <-----------RAV1(1)<---------PCF2     -----                                --------->ANAC58--------->ARR11(3)<---------KAN4(1) --------->ATHB12- -------->DOF2              --------->YAB1==============================HOX2a_HOX2a<---------YAB1   <   gcaaagacgtttctgtttcaatctctccaaatataagccaaacaggatatgattttggttctggtggatcattctagtgggccgtatgatgggcctaaga  18147100                                                      <---------ZAT18                                                      <---------ZAT14                                                      --------->ZAT18                                                   -------------->OsCBT                                                   --------->ALFIN1                                                 --------------------->WRI1                                                 ====================bZIP_DOF                                                 <---------TGA1a                                                 <---------ANAC58                                                 --------->O2                                            ------>ZmHOX2a(2)                                           <------ZmHOX2a(2)                                          --------->ARR11(3)                                  --------->LBD16<---------O2                                <---------LBD16  <---------ANAC46                             -------                              --------->ARR14(2) --------->TGA1a                             <-------                              <---------ARR14(2) =======================MYC_MYB            --------->WOX13(1)                            ----------->ARR10    <---------ANAC58                        ------------                       <---------ANAC46   --------->ARR14(2)                             <---------YAB1                       <---------ANAC55(2)<---------ARR14(2)                            --------->TOE2(3)         --------->GLK1(2) <--------P======================MYC_MYB              <---------ARR11(3)      <---------MYB52(2)   ================================MYC_MYB<---------REM1(1)    --------->YAB1 ---->YAB1            <---------LBD16<--------P------>NtERF2    <-------GAMYB   --------->ARR11(3) -------->DAG2      <---------ARR14(2)    <---------ARR11(3)   <-----------RAV1(1)     <---------ICU4 ---------TOE2(3)   --------->ARR14(2)   <---------GLK1(1)<----------DOF2      <---------CCA1(2)   <-   ataaggcaactaatctgggtcgaatacgggtagacccgggttgagatcccgacgtgtgcgcttcgctgttgtagtagtagtatatctcatcatcaatcag  18147200                                              ------>ZmHOX2a(2)                   --------->ANAC46                                             <------ZmHOX2a(2)             --------->ALFIN1                                             --------->CCA1(2)            <---------MYB52(1)                                            --------->ARR14(3)           --------->LBD16                                            --------->ARR14(2)       --------->ARR14(2)                                            <---------ARR14(2)       <---------ARR14(2)                                            --------->AGP1           --------->GLK1(2)                                            --------->ARR11(3)      --------->ARR14(2)                                            <---------ARR11(3)      <---------GLK1(2)                                           --------->GLK1(1)        <---------ARR14(2) -->YAB1<---------LBD16                   ----------->ARR10        --------->At4g35610 --ATHB12   --------->ARR14(2)      ------->GAMYB               <------ZmHOX2a(2) --------->ANAC58 >CBF*TSS   <---------ARR14(2)   --------->MYB52(1)    ---------->DOF2 <---------LBD16          <---- ---------DOF2            <---------CCA1(2)<---------GLK1(1)  <---------GLK1(1)   --------->ANAC58   gcttttgagcctcggaaactcaatccttgtatattcaacggagagagatctgcgagagaaagagagatcagattccggtgttccaaggaagcacatattt  18147300                                                                                --------->ZAT14                                                                                <---------ZAT18                                                                              --------->ATERF1(1)                                                                              <---------DEAR3(1)            ----------->RAV1(2)                                              <---------At4g35610       --------->ARR14(2)                                                    --------->At4g35610       <---------GLK1(2)                                                     ------>NtERF2       <---------ARR14(2)                                                 <---------ATERF1(1)     --------->LBD16                                                      ------>NtERF2    <---------HSFB2a(2)                                                  --------->DEAR3(1)    --------->HSFB2a(2)                                                 --------->ATERF1(1)  --------->CCA1(2)                                                     <------NtERF2  <------ZmHOX2a(2)                                                    <---------At4g35610 --------->AGP1                                                        --------->At4g35610 --------->ARR11(3)                                              <---------ANAC58 <---------ARR11(3)                                              <---------ANAC58 <---------ARR14(2)                  <---------ANAC46       <---------At4g35610 ------>NtERF2       < --------->ARR14(2)     <---------ETT(2)            <----------DOF2    <---------ATERF1(1)         <- -----AHL20(2)          --------->ETT(2)       <---------At4g35610    <---------DEAR3(1)          ---   taagatccagaatcgcctgagagatgtctaccttcagtggcgatgagaccgctcctttcttcggcttccttggcgctgccgctgcgctcgtcttctcatg  18147400  Previous    Next  AGI:  At4g38910.1    Description:  ATBPC5/BBR/BPC5/BPC5 (BASIC PENTACYSTEINE 5); DNA binding / transcription factor. similar to ATBPC4/BBR/BPC4/BPC4 (BASIC PENTACYSTEINE 4), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT2G21240.1); similar to ATBPC4/BBR/BPC4/BPC4 (BASIC PENTACYSTEINE 4) [Arabidopsis thaliana] (TAIR:AT2G21240.2); similar to GAGA-motif binding transcriptional activator [Populus trichocarpa] (GB:ABV53914.1); contains InterPro domain GAGA binding-like (InterPro:IPR010409) Range:  from: 18144519    to: 18146859    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At4g38920.1    Description:  ATVHA-C3/AVA-P3 (vacuolar-type H(+)-ATPase C3); ATPase. Identical to Vacuolar ATP synthase 16 kDa proteolipid subunit 1/3/5 (AVAP5) [Arabidopsis Thaliana] (GB:P59227;GB:Q39037;GB:Q39038;GB:Q39039;GB:Q42424;GB:Q96298); similar to vacuolar ATP synthase 16 kDa proteolipid subunit 5 / V-ATPase 16 kDa proteolipid subunit 5 (AVAP5) [Arabidopsis thaliana] (TAIR:AT2G16510.1); similar to AVA-P1 (vacuolar H+-pumping ATPase 16 kDa proteolipid subunit 1), ATPase/ hydrogen ion transporting ATPase, rotational mechanism [Arabidopsis thaliana] (TAIR:AT4G34720.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN78114.1); contains InterPro domain ATPa Range:  from: 18147205    to: 18149261    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version