Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                             ------>NtERF2                                          ----------->HVH21                                        <---------LBD16                                        --------->At4g35610                                      --------->TOE2(2)                                     ----------->RAV1(2)          <---------------AGL15                                     <---------ZAT2             --------->At4g35610               ---                                    -------->P                <---------WOX13(1)                -----                                --------->ANAC58           <---------TOE2(2)            <---------AHL20(2)                                --------->ANAC58           <---------TOE1(2)           --------->AHL20(2) ---------DOF2                  --------->ANAC46        ------>ZmHOX2a(2)           --------->AHL20(2) ------>ID1   ------->TEIL     <---------HSFB2a(2) <---------WOX13(1)      ---------->DOF2 XXXXXXXXXX   tctttatactgacatgaatcaacgtcttctgttctcgcaacctgcggacagagattgatcgtagattgctgcaagaagaaagagcataaattaatccctc  18138700                                --------->At4g35610                                <-------GAMYB                                              --------->DEAR3(1)                        <---------ATHB12                                               --------->MYB46(3)                  <---------ARR14(2)                                 <-------TEIL      <---------ABI4(2)                 --------->GLK1(1)                                  --------->ARR14(1)--------->ANAC46 --->ZmHOX2a(1)  <---------CCA1(2)                                 --------->ARR11(1) --------->ANAC58 ------>RAV1(2)--------->YAB1   <---------At4g35610              ----------->ARR10    --------->ANAC58 XXXXXXXXXX>MIR413--------->ARR14(2)             <---------ARR11(3)<---------GLK1(2)---------->DOF2   ctgttctaaactctctctcatatccaatggtttcagttgccaaaaaaactagttcttaaaacatagatagattcgaagctatacatacaagcaccgatgt  18138800                                                                                          --------->RAP2.6(2)                                                                                          ------>NtERF2                                                                                          <---------ATERF1(1)                                                                                         <---------ATERF1(2)                                                                                         <---------DEAR3(1)                                                                                        --------->At4g35610                                                                                        <---------LBD16                                                                                      <---------DEAR3(1)                                                                            <---------ZAT18                                                                            ------>NtERF2--------->ATERF1(2)                   <---------ANAC58                                         --------->ZAT18<------NtERF2                   <---------ANAC58                                       --------->RAP2.3(1)                  <------NtERF2                               ------>MYB83--------->ATERF1(1)                  ------>NtERF2                             <---------MYB59--------->DEAR3(1)                 --------->LBD16--------->At4g35610         --------->AtMYB61   ----------->HVH21                <---------DEAR3(1)   <---------ANAC46  ------>ZmHOX2a(1) <---------ATERF1(1)               <---------LBD16  <---------At4g35610  ----------->RAV1(2) <---------RAP2.3(1)      <---------ICU4<---------SPL7  ---------->ID1   <---------LBD16  XXXXXXXXXXXXXXXXXXXX>MIR171A     <---------ATHB12           <-------GAMYB<---------GLK1(1)------>MYB46(1)<------NtERF2<---------RAP2.3(1)   gattcgaatcaatacctcgcggcgttcccgtttcagttgtcgtttagatttcttctcctgaaccaaacccgattgaggcgccctaacatcggcggcatca  18138900                <----------DOF2               <---------ANAC46               <---------ANAC58               <---------ANAC58           --------->RAP2.6(3)           --------->SPL7          <---------ARR14(2)          --------->ARR14(2)          --------->MYB52(1)       --------->ANAC55(1)       --------->ANAC58       --------->ANAC58       --------->ANAC46       --------->ANAC55(2)           <---------GLK1(1)       <---------ANAC55(2)           --------->GLK1(1)                    <---------ARR11(3)      <---------LBD16          ---------->DOF2                      --------->HSFB2a(2)     --------->MYB52(1)     <------ZmHOX2a(1)                       <---------HSFB2a(2)    <---------REM1(2)      <----------ID1           ==================HOX2a_HOX2a   <----------DOF2       <------ZmHOX2a(1)          <------ZmHOX2a(1)     --------->ARR11(3)  <---------ANAC58     --------->ALFIN1   ============================HOX2a_HOX2a    <---------------  <---------ANAC58    <------ZmHOX2a(1)   ------>ZmHOX2a(1)    ------>ZmHOX2a(2) --------->LBD16   ttttgcttcacggaacggcttggaggaggaggacaaaggaactccttcttaataggagccattgatcgttctataagctcttccgaagtcgcttcataca  18139000                                                                          --------->LBD16                                                                     <---------ZAT2                                                                   <-------MYC2                                                                   <-------PIF5                                                                   ------->MYC3                                                                   ------->PIF5                                        ------->TEIL               ------->MYC2                                       <---------AtLEC2            <-------MYC3                     <                                ------>NtERF2                     <---------ANAC58                  -                               --------->DEAR3(1)               --------->DEAR3(1)                 --                            --------->ANAC58                  <---------At5g28300                  --                         --------->ARR14(2)                  --------->ANAC46                    ----                         ----------->HVH21                   <---------ALFIN1                   -----          <---------ANAC46  --------->ANAC58              --------->ARR14(2)                   <-----          <---------ANAC58<---------DOF5.7(2)      --------->ZAT6 <---------ANAC46             <-----          <---------ANAC58---------->DOF2<---------GLK1(1)<---------ARR14(2)               --------->MYB52(1) --------->ZAT14        <-----------HVH21<---------At4g35610--------->MYB46(3)       ----------->HVH21 <---------ZAT14        <---------MYB52(1)      --------->REM1(1) <---------ANAC58 --------->At4g35610 ------WRI1             --------->DOF5.7(2)   ------>ZmHOX2a(1)--------->ANAC46    <---------At4g35610   cagagaactgtttcgtcgattgaaccggtaacgcagcctttgcatctccttcaacactagtatccaccgcgtgctccgctattacatctgacatagcggt  18139100            --------->ANAC58        <-----------TGA1       --------->bZIP60(1)       <---------bZIP60(1)       --------->O2                                   <---------YAB1 ---------ZAT2                                      <---------CCA1(1) -------->ZAT2                                     --------->ARR11(3) ------->ANAC58                                    <---------ARR11(3) ------->ANAC58                           <---------TOE2(3)                      ----------->RAV1(1) ------>DOF2--------->ANAC58           <<<<<<<<<MYB98 <---------AHL20(2)      --------->ANAC58 ---->WRKY18(1)                      <---------MYB46(3)                       --------->ANAC58 ---ZAP1<-----------HVH21  <---------ZAT6 <---------TOE1(3)          --------->CCA1(2) ------HVH21<---------ANAC55(2)  <---------ZAT6   <<<<<<<<<RAP2.2   <----------ID1------------>CBF --   caagctccgtcgtcacgaaaatgaagtgagtgatagtgtttgttagggttttagatattattcacagagagagacgaagaaggcaacaatgttttgggat  18139200                                                    --------->DAG2                                               ------>MYB83                  --------->DEAR3(1)           ------>MYB46(1)--------->GLK1(2)                --------->MYB52(1)  --------->AHL20(2)       <---------GLK1(2)        <----------ID1          --------->AHL20(2) ---------->DOF2          <---------AHL20(2)   <---------AHL20(2)       ----------->GT1 --------->MYB46(3)--------->ARR14(2) --------->GT1---------->DOF2--------->TOE2(3)----------->RAV1(1)           --------->AHL20(2)  -----   gctgtttaatgggccaaaaaccggcccataatgttaaaataaacaaaccaacaaaaagagacagaatccaagactaaattaaaaactaaaaacaaaacaa  18139300                   <---------At4g35610       <----------DOF2    --------->GLK1(2)    <-----------ARR10                                                          <------------CBF    <---------ARR14(2)                                                       --------->AHL20(2)    --------->ARR11(3)     --------->WOX13(1)                               ----------->TBP    --------->ARR14(2)   ------------>CBF                                 --------------->AGL15    <---------ARR11(3)   <---------ATHB12                                 <---------------AGL15    --   <---------ARR14(1)  --------->WOX13(1)   <---------ANAC58        --------->ARR11(3)            <--   <---------GLK1(2) ------------>CBF<---------ANAC55(2)            <---------ARR11(3)      <-------- ---->MYB52(1)     --------->At4g35610      <---------ANAC58       <---------CCA1(2)     <-----------GT1   acagagaatctttttgtctgaagctcaatcaatcccattacatataacttgtgttcatagttcatacctatatctactataaattgaattttttctttct  18139400                                                                                           --------->ATHB12                                                                                       --------->ATHB12                           <---------ANAC58                                           --------->ICU4                           <---------ANAC46                                           <---------YAB1                         --------->ARR11(3)                        <---------ZAT14   <---------TOE2(3)                     <---------AHL20(2)                            --------->ZAT14 <---------AHL20(2)                     <---------AHL20(1)                            <---------ZAT18--------->AHL20(1)                     --------->AHL20(2)                     ----------->HVH21     --------->AHL20(2)                     --------->AHL20(1)                     ------->GAMYB         <---------AHL20(1) ------->YAB1       --------->AHL20(2)                    <---------At4g35610     <---------AHL20(2)- -------TOE2(3)     <---------AHL20(2)                    ----------->RAV1(2)    --------->YAB1     < --DOF2     ----------->GT1<---------ANAC58               --------->At4g35610--------->AHL20(2)     -   aagataacaacatattgtaaaattaaatttcttggacttatatgatatatatgtaaattcaactgactctgcacataaatgaaatataatgtttgatttg  18139500                                       ----------->RAV1(1)                                    --------->ANAC58                                    --------->ANAC46                                    --------->DEAR3(1)     <---------ANAC58               --------->ANAC58     <---------ANAC58            <---------ALFIN1                                                   -   <-----------GT1              ------>ZmHOX2a(2)  --------->ZAT14           ---------->ID1         <   ------->TEIL           <----------DOF2--------->MYB46(3)            <---------GLK1(2)          <-- -------->ANAC55(2)   -------->P--------->MYB46(3) --------->At4g35610 <---------ARR14(2)        <--- ---------ANAC55(2)   ------>MYB46(1)--------->LBD16       --------->ATHB12<-----------RAV1(1)  <---- ---------->GT1       ------>MYB83 --------->ANAC46<---------ZAT14     --------->ARR11(3)     <------   atatgtaacttgttgaaaaactccaaccctttgatccaccgcaacaacttctctgctctattcatttgattcagattttgttgccatggttccattctgg  18139600  Previous    Next  AGI:  At4g38890.1    Description:  dihydrouridine synthase family protein. similar to FAD binding / catalytic/ tRNA dihydrouridine synthase [Arabidopsis thaliana] (TAIR:AT3G49640.1); similar to H0613H07.1 [Oryza sativa (indica cultivar-group)] (GB:CAH66003.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO47260.1); similar to hypothetical protein OsI_014076 [Oryza sativa (indica cultivar-group)] (GB:EAY92843.1); contains InterPro domain Dihydrouridine synthase, DuS; (InterPro:IPR001269); contains InterPro domain Aldolase-type TIM barrel; (InterPro:IPR013785) Range:  from: 18135794    to: 18139094    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At4g38900.1    Description:  bZIP protein. similar to bZIP family transcription factor [Arabidopsis thaliana] (TAIR:AT2G21230.1); similar to bZIP transcription factor bZIP28 [Glycine max] (GB:ABI34675.1); contains InterPro domain bZIP transcription factor, bZIP-1; (InterPro:IPR011616); contains InterPro domain Basic-leucine zipper (bZIP) transcription factor; (InterPro:IPR004827) Range:  from: 18139289    to: 18141944    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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