Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100   ---------ANAC55(2) -------->ANAC58 -------->ANAC58 -------->ANAC55(2)                                                                    <------ZmHOX2a(2) --------LBD16                        <---------At4g35610                       --------->YAB1  ----- ---ZmHOX2a(2)                       --------->GLK1(2)                  --------->ARR14(2)      ----- -------HVH21                  ---------->DOF2                          --------->GLK1(2)       ----- ->ANAC55(2)               <-------TEIL                                <---------GLK1(2)  --------->At4g35610 ->ANAC55(1)           ----------->ARR10<---------YAB1         <---------AHL20(2)    --------->At4g35610 --ANAC55(2)     <---------CCA1(2)  <---------GLK1(2)          --------->AHL20(2)  --------->YAB1 -LBD16<---------HSFB2a(2)--------->CCA1(2)    <---------TOE2(3)     <---------TOE2(3)--------->AGP1   tcacggattatagaagcccatagcttagatacacaaaggaatctgattagaggtttgagagacaattttttaagaatctccataatcagatcaactggaa  18133700                                                                                                    <                                                                                                    <                                                                                                    <                                                                                             ------>NtERF2                                                                                            ---------                                                                                            <--------                                                            ----------->HVH21              --------->ATERF1(1)                                                          <---------ANAC58                 --------->MYB46(3)                                                          <---------ANAC58                <---------At4g35610                                                          <---------ANAC46                --------->At4g35610                                                       <---------DEAR3(1)     ------>ZmHOX2a(2) <---- ---->ANAC58        --------------------->WRI1        <---------ANAC46   <------ZmHOX2a(2)<---------ATERF1(1) ---->ANAC58       --------->TOE2(3)          <---------AtLEC2---------->DOF2<---------GLK1(1) <----- ---->ANAC46     -------->P     <----------DOF2    --------->ALFIN1   <---------YAB1      <------NtERF2   gcaactctgagtttacacttacctttgtaaacttctttctctgtgtttccatggtggagggcgtgaaagatgacgatcgatctccctctggcagccacct  18133800        <---------RAP2.6(3)                                              --------->ARR11(3)       <---------ANAC46                                                <---------YAB1 ---------ANAC58                                                     <---------AHL20(2) ------------- ---------ANAC58                           ---------->DOF2           --------->AHL20(2)-------------- ---------ANAC46                        --------->TOE2(3)    <------------CBF          -------------- >RAP2.6(2)                    ----------->GT1        <---------ICU4<---------ATHB12   ============== -ALFIN1------>NtERF2         <---------TOE2(3)      <---------YAB1 --------->ICU4 <---------ICU4   < ------DOF2                   <-----------------------TaNAC69(2)------------>CBF  <---------YAB1    - ----DAG2             <----------DOF2   --------->TOE1(3) ------------>CBF      --------->YAB1-------   ttgcgtttgccgtctagcacaaaacttttgtttaggtgaaaaccctaaagtcttcatcaatgcaattgcaattaatatcgtttcatcattccatattagt  18133900                 <---------AHL20(2)      <---------YAB1                      <---------ICU4     <-----------TBP                     --------->ICU4     --------->AHL20(2)                  <---------AHL20(2)    <---------ICU4                       <---------ATHB51                                <---------YAB1   --------->ICU4<---------AHL20(1)      --------->AHL20(2)                             <-----------GT1 --------->AHL20(2)               --------->AHL20(1)                                  <---------YAB1 -->AGL15        --------->AHL20(2)  <---------AHL20(2)                            <---------YAB1 --->AG          --------->AHL20(1)  --------->AHL20(2)                       --------->At4g35610 --->AGL1  ----------->GT1        <---------AHL20(1)                 ----------------->AGL3 ======================================================================================MADS_MADS ---------AHL20(2)               --------->AHL20(2)             <---------DAG2<---------At4g35610 -------->AHL20(2) <------------CBF----------->TBP              <----------DOF2--------->TOE2(3) ---->GT1  --------->ANAC55(2) --------->AHL20(2)   <---------MYB46(3)--------------->AGL15     -----   aaataatttttataggtaattaattgttgacaaaaatatataaataattaagagttgttgacaaaactttatccaaatttagcttaatattatcgttccc  18134000                                                                         --------->AHL20(2)                                                                         <---------AHL20(2) <--------                                                                     <---------AHL20(2)     <--------                                       <-----------GT1               --------->AHL20(2)     <--------               <----------DOF2 <----------DOF2                     <----------DOF2          <--------      ---------->DOF2  <---------TOE2(3)                       <---------ETT(2)            --------->ATHB12 ------>RAV1(1)<---------DAG2 --------->TOE2(3)                --------->ETT(2)         <------------CBF   acaaaaaaaaaagaagactttatctaatgtttcctttatattcaccctaagcctcccaaaacctgtcgactttaattaaactaattaagctattgcttgg  18134100     <---------DOF5.7(2)   <---------MYB52(1)                                                  <---------HSFB2a(1)   --------->DOF5.7(2)                                   --------->LBD16  <-------GAMYB                                         --------->ANAC58  --------->TOE2(3)                                     --------->ANAC46 -ANAC58                                                --------->ANAC58 -ANAC58                   --------->ARR11(3)          <---------LBD16 --------->HSFB2a(1)         <- -AtLEC2                  --------->GLK1(1)  --------->MYB52(1)     <------ZmHOX2a(1)              <- -ANAC46                  <---------GLK1(1) ----------->HVH21   --------->TOE1(2)         <----------   agttcgttaatggccttctctgtagaagaaatctcgtctattctccctaacagtttatccgcaaaccctaggaatgtttctcaaaatactatttcccctt  18134200                                     --------->TOE1(3)                               --------->HSFB2a(2)                         --------->ANAC58                                             <------NtERF2                         --------->ANAC58                                            --------->LBD16                    --------------->AtSPL3                                           ------>NtERF2                    <---------------AtSPL3                                          <---------ANAC46      --------->ANAC58  --------->SPL7           <-----------HVH21                 <---------LBD16 ---------DOF2      --------------->AtSPL8  <---------YAB1                         <------NtERF2 --------DAG2 --------->TOE2(3)<---------HSFB2a(2)                <---------DAG2<---------LBD16 -GT1 --------->ANAC58<---------SPL7 --------->TOE2(3)            <----------DOF2<---------DEAR3(1)<-   cctttttcaagccctcccttaaaccgtacgcttccaaaaccctaatctcattgtcatgtagacgctcactttcccctgttttctcggcgggaacatatgt  18134300             --------->At4g35610             <---------At4g35610       <---------DOF5.7(2)      --------->WRKY12      --------->WRKY45                                                              <---------ANAC58      --------->WRKY38(1)                                          --------->HSFC1(2)             <--     --------->DOF5.7(2)                                           <---------At4g35610          -----    --------->TOE1(3)                                              --------->HSFB2a(1)          -----  <---------TOE1(3)                <---------LBD16                 <---------HSFC1(2)           -----  <---------TOE2(3)        --------->ANAC46               <---------GLK1(1)<---------CCA1(2) -------- --------->MYB52(1) --------->ANAC58         --------->ETT(1)----------->RAV1(2)    <---------ANAC58 --------MYB52(2)   --------->ANAC58 --------->LBD16  --------->AtLEC2   --------->ANAC46    <-------   cactaacgttgacgaagatgacaagcttcacgaagaatgcggagttgtcggaatccatggagaccctgaagcttcccgtctctcttacttggctctacac  18134400      <---------ALFIN1    ----------->RAV1(1)                                          --------->YAB1 -------ALFIN1                                         --------->HSFB2a(2) ---->ANAC58                          --------->RAP2.6(2)       <---------ATHB12 ---->ANAC58                    <---------REM1(1)      <---------HSFB2a(2)--------->ETT(1)    <------ ---->ANAC46                <------ZmHOX2a(1)   --------->MYB52(1) <-----------RAV1(2) --------->At4g35610 ->ZAT14                --------->At4g35610  --------->YAB1   --------->WOX13(1)       <---------At4g35610 --REM1(2)            <------ZmHOX2a(1)     <---------ATHB12<---------ATHB12         <-----------RAV1(2)   gcactgcaacaccgtggccaagaaggagcaggaattgtagccgctaatcaaaacggtctcgaatcaatcacaggggtcggattagtctcagatgtgttca  18134500                                                    --------->ANAC58                                                    --------->ANAC58                                                 <---------MYB52(1)                           <------NtERF2        --------->LBD16  ------>NtERF2                          ------>NtERF2     <---------ARR14(2)  --------->ARR14(2)                          ----------->RAV1(1) <---------LBD16   <---------ARR14(2)                         <---------ETT(2)   --------->ARR14(2)--------->LBD16                         --------->ETT(2)   <-----------HVH21<---------HSFB2a(2)                      ------>ZmHOX2a(1)   ---------->TaMYB80 --------->HSFB2a(2)                    ==================RAV<---------ANAC58   <---------LBD16       --------->KAN4(1) ---ZAT14           ----------->RAV1(2)  <---------ANAC58  --------->MYB52(1)    <---------KAN4(2)   ccgagtcaaaactaaacaatcttcctggcgacatagcgatagggcatgtccggtactcaacttccggagcctctatgctcaagaatgttcagcctttcat  18134600  Previous    Next  AGI:  At4g38870.1    Description:  F-box family protein. Identical to Putative F-box protein At4g38870 [Arabidopsis Thaliana] (GB:Q9T0J4); similar to F-box family protein [Arabidopsis thaliana] (TAIR:AT2G21930.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN60954.1); contains InterPro domain F-box associated type 3 (InterPro:IPR013187); contains InterPro domain Cyclin-like F-box (InterPro:IPR001810); contains InterPro domain F-box associated type 1 (InterPro:IPR006527) Range:  from: 18132577    to: 18133857    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At4g38880.1    Description:  ATASE3 (GLN PHOSPHORIBOSYL PYROPHOSPHATE AMIDOTRANSFERASE 3); amidophosphoribosyltransferase. similar to ATASE2 (GLN PHOSPHORIBOSYL PYROPHOSPHATE AMIDOTRANSFERASE 2), amidophosphoribosyltransferase [Arabidopsis thaliana] (TAIR:AT4G34740.1); similar to ATASE (GLN PHOSPHORIBOSYL PYROPHOSPHATE AMIDOTRANSFERASE 1), amidophosphoribosyltransferase [Arabidopsis thaliana] (TAIR:AT2G16570.1); similar to 5-phosphoribosyl-1-pyrophosphate amidotransferase [Nicotiana tabacum] (GB:AAR06289.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO47261.1); similar to unknown [Populus trichocarpa] (GB:ABK94696.1); contains InterPro domain Purine/pyrimi Range:  from: 18134110    to: 18135708    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version