Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                          ----------->RAV1(1)                                                                   <---------ANAC58                   <-----------GT1                                 <---------ANAC58            <---------ATHB12                                    <----------DOF2             <--------          --------->GLK1(1)                                  <-----------GT1     <---------AHL20(2) -------ANAC46  <---------ICU4<---------MYB46(3)            <-----------GT1  <---------GLK1(2)   atgtgaagacagaaatcaatatgaccacttgtttgttagatagacactataactagtcaaattttcctttcttgccacagaatttttttgaaggcttttg  18125800                                                                                                    -                                                                                                    <                                                                                                 <---                                                                                                 <---                                              --------->ATHB12                                  -----                                    <----------DOF2                                             -----                             --------->PCF5  <---------YAB1                                     -----                          --------->ALFIN1  <---------ARR11(3)                              --------- <----------DOF2     <---------ATHB12       --------->ARR11(3)                             <-------TEIL --DOF2      <---------AHL20(2) ------>ZmHOX2a(1)                         <---------ZAT6<---------MYB46(3)   tgactttgtcagtatataatcaaatcatgtggtcctgtcttttgaatatcattgagaagaaggtatgacttaatcagtgatagagacttgtggttcatta  18125900 --------->ANAC58 --------->ANAC58 -------->ZAT18 -------TEIL                                        <----------DOF2 ---MYB46(1)                                <-------MYC3                                      <------ ---MYB83                                   ------->MYC3                                      ------- ---->MYB46(2)                           <---------ANAC58        --------->ANAC58            <------- ---->MYB59                              <---------ANAC46        --------->ANAC58            -------- ---->MYB111(1)                     --------->CCA1(2)   <----------ID1   <---------ATHB12<------ZmHOX2a(1) >ATHB12               --------->GLK1(2) <---------ANAC58      ---------->DOF2   <---------YAB1------   ggtacacaacttcatgtccctacataatctatagagagatttggcatgtgatgtctttgagacaaataagccccaatgaagttatcatgtaggacatcat  18126000                                                                   <---------ZAT14                                                                   --------->ZAT18                                                                   --------->ZAT14                                                                 <-------MYC3                                                                 ------->MYC3                                                           --------->ANAC58                                                           --------->ANAC58               --------->TOE1(3)                                                         ---------->DOF2                  --------->TOE2(3) ---ICU4                                               ------->GAMYB              ----------->GT1 -->ATHB12                 --------->ATHB12        --------->REM1(1)              <----------ID1 --YAB1                <---------AHL20(2)          --------->MYB46(3)           ---------->DOF2     < ->ICU4                --------->ATHB12       <---------ARR14(2) ------->MYC2--------->AHL20(2)     - --->TOE2(3)          --------->AHL20(2)      --------->ARR14(2) <-------MYC2<---------AHL20(2) -----   tagacactaacttctcagacaccatttattgatttgttcttggtttagtatctacaacccaaagccatgtgctctgtaattaaaaagaaaaacctcaaaa  18126100                                    ----------->GT1                                    --------->ANAC55(2)                  <---------TOE1(2) --------->ANAC58                                    --------->TOE2(3)               --------->YAB1       --------->ANAC58                                  <---------ARR11(3)      --------->YAB1                --------->ANAC55(1)                         --------->YAB1      <--------HAHB4                <---------ANAC55(2)                   <------ZmHOX2a(2)      --------->ATHB12       <---------------AGL15                        --------->CCA1(2)      <---------ICU4       --------->AHL20(2)                            --------->ARR11(3)     <---------ATHB12  --------->MYB52(2)                                <---------ARR11(3) ---------ANAC55(2)   <-------TEIL  --------->ANAC46              ---------->DOF2     --------->ARR11(3) -------->ANAC55(2)  <---------MYB52(1)<-----------GT1   <-------TEIL    --------->ARR14(2)     <---- ---->YAB1  <----------DOF2<-----------TBP        <----------DOF2*TSS    <---------ARR14(2)----------   atacttaatcatttctttcatacgttcgtttatataacaagtaactaaacccctttagattcacaaactaaagaagatccaattttaaaatctcaaagct  18126200                                                                              --------->ANAC58                                                                       <---------ANAC58                                        ----------->GT1                <---------ANAC46                                       ----------->GT1                 <---------ANAC58            --                                     --------->MYB52(1)      <------ZmHOX2a(1)--------->ANAC58    <--                             <------ZmHOX2a(1)     <---------ANAC58<---------ANAC58               <--                            --------->LBD16        <---------ANAC58<---------ANAC58              <--- ------DOF2               <-----------RAV1(2)<---------ARR14(2)  --------->GLK1(2)  --------->AHL20(2) >DOF2               <---------TOE1(3)--------->DAG2<----------DOF2<---------ANAC46 <---------ATHB51   ttctccaagactaagaaacatttaagcttcaggaaaacataagggaaaatatggcttttttgaggagtttcttgggtgctaagcaaattattcgaaggga  18126300                                                                          <---------ANAC46                                                                         <------NtERF2                                                                        ------>NtERF2                                                                       <---------PCF2                                                                       --------->TCP20                                                                     <---------ANAC58                                                                     <---------ANAC58                                                                    <-----------RAV1(1)         ------>NtERF2    <---------ANAC58                        <-----------RAV1(1)     <---------ETT(2)     <---------ANAC58         --------->At4g35610 --------->TCP16(1)     --------->ETT(2)     <---------RAP2.6(2) --------->YAB1    --------->CCA1(2) ------->YAB1       <-------TEIL             --------->ICU4    --------->ARR11(3) -------HSFB2a(1) <---------ARR14(2)        <---------KAN4(2)  <---------ARR11(3)               <---- -------HSFC1(2)  --------->ARR14(2)        ------------------------>ANAC81<---------DEAR3(2)------>MYB46(1) ------KAN4(2)   <------ZmHOX2a(1)    <------ZmHOX2a(1)>>>>>>>>>TBF1--------->ALFIN1         ------>MYB83   atcatcgtcgacaccaagaggattcatggcggtctatgtaggagagaatgatcagaagaagaagagatatgtggtgccggtttcatacttaaaccagcct  18126400                                           --------->ARR11(3)                                           <---------ARR11(3)                                         <---------YAB1                           <------ZmHOX2a(1)                    --------->ZAT6                    <---------ARR14(2)   --------->ICU4   <------NtERF2  <-----------HVH21                <XXXXXXXXXXXXXXXXXXXXMIR865-3P            --------->At4g35610               ----------->GT1      <------MYB83         ------>NtERF2  --------->bZIP60(2)      --------->MYB46(3) <---------TOE2(3)--------->YAB1<---------RAP2.3(2)     XXXXXXXXXXXXXXXXXXXX>MIR780.1  <------MYB46(1)     <---------RAP2.6(2)     ------->TEIL    <---- ------DOF2    <---------ANAC46    --------->MYB59      <---------DEAR3(1)   <---------YAB1<---------REM1(2)   ttgtttcaacaactgttgagtaaatctgaggaagagtttggttatgatcatccaatgggcggcttaacaataccatgtcatgaatctttgttcttcacag  18126500                                                                             --------->ICU4                       --------->ZAT14                                       <---------YAB1                --------------->AtSPL3                                 --------->LBD16                <---------------AtSPL8                     --------->At4g35610   --------->YAB1          <-------TEIL <---------ZAT14                     <---------At4g35610   ----------->GT1         --------->CCA1(2)                              <---------MYB52(1)  <---------ARR11(3)        --------->ARR14(2)    ----------->RAV1(1)  <<<<<<<<<RAP2.2    <---------LBD16        <---------ARR14(2)   --------->REM1(1)    <---------TOE2(3)  <---------LBD16 -------HVH21   --------------->AtSPL8      <---------AHL20(2)       ----------->RAV1(2)   tcacatctcagatacaatgaagtactatactacaacatttccatattttttttagattgttagctaatttcccctggagataattgtaaattgtttcaat  18126600                                    <---------ANAC55(2)                                    <---------ANAC58                       ---------->DOF2                                    <---------ANAC58                  --------------->AGL15                                    --------->ANAC55(2)               <---------------AGL15                                    <---------ANAC46                 ----------------->AGL3                   --------->ARR11(3)         ----------->GT1        ----------------->AGL1       <-----------GT1    <---------WOX13(1)<---------ANAC58         ----------------->AGL2    ---------->TaMYB80 <---------YAB1       <---------AtLEC2    --------------->AtSPL8    <---------KAN4(2)------>ZmHOX2a(2)      <---------ANAC58   <---------ANAC58  <------ZmHOX2a(1)<---------ARR11(3)  <---------ARR14(2)      <---------ANAC58  ==========================HOX2a_HOX2a--------->ARR14(2)      <---------ANAC46   gagaggaatatacaatacatagatcgtaattgatcaatgcgtatttgcatgttaatacatttgtgtcttgtaccaaaaaaaggaattatacatttgtgtc  18126700  Previous    Next  AGI:  At4g38850.1    Description:  SAUR_AC1 (SMALL AUXIN UP RNA 1 FROM ARABIDOPSIS THALIANA ECOTYPE COLUMBIA). similar to auxin-responsive protein, putative [Arabidopsis thaliana] (TAIR:AT5G18080.1); similar to SAUR [Raphanus sativus] (GB:BAA25434.1); contains InterPro domain Auxin responsive SAUR protein (InterPro:IPR003676) Range:  from: 18126165    to: 18126674    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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