Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                       <------ZmHOX2a(1)                   --------->LBD16                  <---------LBD16                  <---------HSFB2a(2)            --------->ARR14(2)            --------->KAN4(2)            <---------GLK1(2)            <---------ARR14(2)                 ------->TEIL           <---------KAN4(1)                --------->ANAC58           --------->KAN4(1)                --------->ANAC58           ------->MYC3           <----------TaMYB80      <---------ANAC58             --------->CCA1(2)          ---------->TaMYB80       <---------ANAC58            --------->ARR11(3)             ------- ------->LBD16    <-----------RAV1(2)       <---------MYB52(2) --------->ARR14(2)          <--------- -------LBD16     --------->HSFB2a(2)    <------ZmHOX2a(1)     <---------ARR11(3)     --------->HSFC1(2) >RAV1(2) <---------KAN4(2)        <---------ANAC46    --------->ZAT18 <-------MYC3   <---------HSFC1(2)   ccagggcataggcatattctccaggagcttgaaaactgcgtgaggaacgaacttaagtgctccaagatatacacgtttatcaagtcgatgtttctttgat  18110600                                                                                                    <                                                                                                    <                                                                      ---------->DOF2               <                                                                 -------->HAHB4         <-------TEIL-                                                                 --------->YAB1       <---------GLK1(2)                     --------->YAB1                           ------>MYB46(1)         --------->ARR14(2)               --------->LBD16                                ------>MYB83--------->ARR11(3)      <-- -->YAB1     ------>ZmHOX2a(2)                              --------->TOE2(3)         <---------ARR14(2) -DOF2     <---------ARR11(3)            --------->WOX13(1) <---------MYB59         ----------->ARR10   gacatatcaccatgatccctgaatcaaaacgcagagtcagtttcaatctaacttaacccaaacctaataatacaaagaaattggaccagattcgtttccc  18110700                                                                       <---------ANAC58                                                                       <---------ANAC46                                                                       <---------ANAC58                                                                      <------NtERF2                                                                  --------->ZAT2                                                                  <---------ZAT2                  ---                                                                  --------->At4g35610            ----                                                                  <---------At4g35610         <------        --------->GLK1(1)                                         --------->TGA1a             -------        <---------GLK1(1)                                         <---------O2                -------  --------->At4g35610                                     <---------ANAC58               --------->ARR14(2)  <---------At4g35610                                     <---------ANAC58      --------------------- ---------WRKY12                                        --------->MYB52(1)<---------ARR14(2)  ------- ---------ZAT14                                        ------>ZmHOX2a(1)  --------->ARR14(2) -------- ---------WRKY38(1)                                <-----------GT1--------->O2------>ZmHOX2a(1)------ -------->ZAT14                               <---------YAB1      <---------TGA1a------>ZmHOX2a(1)--- ---------HVH21        ----------->GT1   ----------->RAV1(2)    <-----------RAV1(2)      <---------ARR14(2)   agtcaactggatttcgaaatcgaaattgaaaaattagaaactcgcctgatgattttcctaacgtgctcaggtggcatgtcctccttctgagtttccacga  18110800                                                                                                 ----                                                                                                -----                                                                                                <----                         <---------MYB52(1)                                                     ----- ------>ANAC58       --------->SPL7                                                             <---- --->TEIL          <---------SPL1(2)                                                            ----- ---MYB52(2)       <---------SPL7                                                               ----- -->ANAC46        --------->DEAR3(1)                                                            <---- -->ANAC58       <------NtERF2                                                                <------ >WRI1          ------>NtERF2                                                                 ------- -->ANAC58     ------------------>SPL14                                                      <------ZmHOX2a(1) ->LBD16 ------>ZmHOX2a(1)             <-------TEIL                                 <---------LBD16 --->AtMYB61<-----------RAV1(1)     --------->At4g35610          --------->ANAC58  ------>ZmHOX2a(1) ------>ANAC58---------->ID1        <---------At4g35610          --------->ANAC58  <---------LBD16<--   acccaaacttcctcttgtcgccgtaccgtttggaatttagctgcatccatgttctcgccttcttctcaagcttcgcctctgcatcctcgggagtaggaac  18110900                                                                                   <---------LBD16                                                                                   <-----------RAV1(2)                                                                                  <---------TOE1(1)                         --------->LBD16                                      <---------DEAR3(2)          <---------YAB1<---------ANAC58                                     <---------DEAR3(1)      <---------ARR14(2)--------->DEAR3(1)                                 <-----------HVH21  <------NtERF2         <---------ANAC46                                  --------->DEAR3(1) ----->DEAR3(1)         <---------ANAC58                                 --------->HSFB2a(1)        < ---->MYB46(3)         <------NtERF2                                     --------->MYB46(3)        <- -----HSFC1(2)         --------->ATERF1(1)                               <---------HSFB2a(1)       <- ---->DEAR3(2)        ------>NtERF2<------ZmHOX2a(1)                     --------->DEAR3(2)       <-- -----HSFB2a(1)       <---------RAP2.3(1)                                <---------HSFC1(2)       --- ---->HSFC1(2)       --------->DEAR3(1)                                  --------->HSFC1(2)       --- ---->HSFB2a(1)      <---------DEAR3(1)                  --------->ALFIN1<------------AtMYB77    <--- --------AtMYB77    --------->ATERF1(1)            ----------->HVH21 --------->TOE1(1)     --------->At4g35610 ---ARR14(2)        --------->RAP2.3(1)    <---------LBD16          --------->HSFB2a(2)  <------ZmHOX2a(1) -->ARR14(2)        <---------ABI4(2)      <---------At4g35610      ------>ZmHOX2a(1) <------ZmHOX2a(1) ---------HVH21    <---------ATERF1(1)     --------->At4g35610      <---------HSFB2a(2)--------->ALFIN1   cgtcggagtattccgattagaaggcgccgtgtaagaaggatgatcagcgggatgtgaaggtgtctgcatcctcgaaccgtcggtaccaggaggagctaag  18111000      <---------YAB1  --------->SPL7  ------->TEIL ---------SPL7 --------ANAC58 --------ANAC58                                               <------ZmHOX2a(1)       <---------ANAC58 -------------AtSPL8                                       ------>NtERF2              <---------ANAC58 ------------>AtSPL3                           --------->ANAC58        --------->TOE1(3) ------------>AtSPL8         --------->GLK1(1) --------->ANAC58        --------->TOE2(3)     -------- ---ZmHOX2a(1)   --------->ANAC46      ---------->DOF2    --------->DEAR3(1)   --------->TOE2(3)   gacgtaccatcaatgttccacatagcttcagatttcaaatccaaaggcccagcaaaatcgccgaggagcaaaaccctaaaacctcagtgcgagccttgac  18111100                                      <------MYB83                                      ----------->GT1                                     <---------MYB46(3)                                     --------->MYB111(1)                                     --------->MYB111(2)                                     --------->MYB46(2)                                     --------->MYB59                                    <---------MYB55(1)                                    <--------P                               --------->ALFIN1                             <-------GAMYB                            <---------MYB46(3)                            --------->MYB55(2)                            <---------DEAR3(2)                  ------->TEIL                      <-----------HVH21                      --------->MYB46(3)       <---------ARR14(2) <------NtERF2                      <---------MYB52(2)      <---------GLK1(1)  <---------SPL7                     --------->SPL7      --------->GLK1(1) <---------DEAR3(1)  ---------->DOF2------>MYB83      --------->HSFB2a(1)<-----------HVH21--------->ANAC58 ------>MYB46(1)           --------->ATHB12  --------->ANAC58   --------->DEAR3(1)   --------->ANAC58 --------->MYB52(1)        --------->YAB1  --------->ANAC58 <---------At5g28300<------MYB46(1)    ------->GAMYB              <-------TEIL-----  --------->ANAC46<-----------GT1<---------AtMYB61    --------->MYB52(1)   --------->ANAC46     <---- --->HVH21    ---------->DOF2<---------ANAC46         <-----------GT1--------->AHL20(2)      <-------   gaacacgaaaatccctaaaatcaccgtcgtcgggtgaggttggtaagaaagacgattaaccgaacgaacatatatatacgaaggcattcatgggcctttt  18111200             <---------YAB1                 --------->ANAC58            <-------TEIL                    --------->O2           --------->CCA1(2)                --------->ANAC58           --------->ARR14(1)               <---------O2          --------->ARR11(1)               <---------LBD16                                  <------MYB83          <---------ARR14(2)               <---------At5g28300                              ---------   ------------>CBF                      ----------->HVH21                             --------->ATHB12 ---->HSFB2a(2)                 <---------TOE2(3)                                   ----------->GT1<- -----HSFB2a(2)         <---------MYB59 <-----------HVH21                  <---------ANAC46 <------MYB46(1) ---DOF2  --------->ARR14(2) <---------AHL20(2)                            --------->ALFIN1--------->MYB59   agaaaaacaatagatacgattatgggcctaatttatggattcagtcacggctcatttagtatttaagagtaagagatgtgtggaaggggtgatttggtaa  18111300                         <----------DOF2               *TSS   <----------DOF2                       -              ------->GAMYB                           <----------DOF2                               <             --------->MYB46(3)                       <---------DAG2 --------->LBD16             ----           --------->WOX13(1)              --------->YAB1     <---------DAG2                    -----          <---------WRKY12    <-----------GT1        <---------DAG2  ------>NtERF2          >>>>>>>>>TBF1 -->GT1  --------->WRKY18(1) <---------AHL20(2)   <-----------GT1   --------->LBD16      ------------ ----------GT1--------->AtMYB61           <------ZmHOX2a(2)<-----------GT1               >>>>>>>>>TBF1   tttacattcaagtcaaccaaaaccagactttttaatctctctcgatcagaagttacctttttcacttttgccgagaaaatcagagacagaagaagaagaa  18111400                                                       --------->WRKY18(1)                                                      <-----------HVH21                                                    <---------AtMYB61                                                  <---------ANAC58                                                  <---------ANAC46                                                  --------->ALFIN1                                                  <---------ANAC58                                               --------->ALFIN1                                              <-------PIF5                                              ------->PIF5                                              <-------MYC2                                              ------->MYC2                                              <-------MYC3                                              ------->MYC3                                              ------->MYC4                                              <-------MYC4                                             <---------PIF3(3)                                             <---------O2                                             --------->O2                                             --------->ANAC46                                             =====================================MYC_MYB        --------->ANAC58                     --------->TGA1a        --------->ANAC58         --------->HSFB2a(1)--------->ALFIN1       --------->DAG2      ------>NtERF2 <------ZmHOX2a(2)      =================================================bZIP_DOF           --------->TOE2(2)      ---------->DOF2     --------->DEAR3(1) <---------TGA1a              --------->TOE1(2) ---------->GT1          <------NtERF2  --------->ARR14(2)                ------->GAMYB             - ----------ID1           --------->ATERF1(1) --------->PIF3(3)           --------->MYB46(3)        -- ----->DAG2             ------>NtERF2   <---------ARR14(2)        <------ZmHOX2a(1)--------->ALFIN1<- ----->DOF2             <---------ATERF1(1)<---------ALFIN1   <<<<<<<<<MYB98  --------->LBD16   ----- ------------>ANAC81   <---------DEAR3(1)================================HOX2a_HOX2a      <----------DOF2   aagcgaaaaaaagcaaaacatgaaggcgacgacgaagactccgatccacgtggtgtggtcatgggttaggagacaacctccgaaggtgaaggcttttctc  18111500  Previous    Next  AGI:  At4g38780.1    Description:  splicing factor, putative. similar to SUS2 (ABNORMAL SUSPENSOR 2) [Arabidopsis thaliana] (TAIR:AT1G80070.1); similar to predicted protein [Physcomitrella patens subsp. patens] (GB:EDQ50159.1); similar to putative splicing factor Prp8 [Oryza sativa (japonica cultivar-group)] (GB:BAD67606.1); similar to predicted protein [Physcomitrella patens subsp. patens] (GB:EDQ66837.1); contains InterPro domain Cupredoxin (InterPro:IPR008972); contains InterPro domain PRO, C-terminal (InterPro:IPR012984); contains InterPro domain PRO8NT; (InterPro:IPR012591); contains InterPro domain PROCN; (InterPro:IPR012592); contains InterPro domain Mov34/MPN/PAD-1 (In Range:  from: 18101290    to: 18111023    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At4g38781.1    Description:  unknown protein Range:  from: 18111035    to: 18111187    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At4g38790.1    Description:  ER lumen protein retaining receptor family protein. similar to ER lumen protein retaining receptor family protein [Arabidopsis thaliana] (TAIR:AT2G21190.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO47308.1); contains InterPro domain ER lumen protein retaining receptor; (InterPro:IPR000133) Range:  from: 18111355    to: 18113200    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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