Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                   <---------ANAC58                              <-------PIF5                              ------->MYC2                              <-------MYC3                              <-------MYC2                              <-------PIF4                              ------->PIF4                                        <-------TEIL                              <-------MYC4                                        ------>ZmHOX2a(2)                              ------->MYC3                                       <------ZmHOX2a(2)                              ------->PIF5                                      <---------ARR11(3)                              ------->MYC4                                      --------->ARR11(3) --                             --------->TGA1a                                    --------->AGP1    ---                             --------->O2  --------->ANAC58                     <---------ARR14(2)<--                             <---------O2  --------->ANAC58       --------->At4g35610  <---------ANAC58                        --------->ANAC46<---------ATHB12        <-----------RAV1(2)    <---------ANAC58                       --------->MYB46(3)---------->DOF2       --------->ZAT14  --------->ARR14(2)---                 ------>MYB46(1) <---------ANAC58              <---------ZAT14 --------->GLK1(1) <--- ---->TGA1a      ------>MYB83<---------TGA1a            <---------REM1(2)<---------ARR14(2)  xxxxxxxx ---->O2   --------->ANAC58  =======================bZIP_DOF  --------->ALFIN1 <---------GLK1(1) ---- -----O2   --------->ANAC46<---------ALFIN1--------->ANAC46--------->ANAC46   ----------->ARR10  ---- ---ALFIN1 --------->ANAC58<------------OsbHLH66 <---------ATHB12 <---------At4g35610<---------MYB52(1)   gtctaagccttccacgacctgcccaaacaccacgtgcttcccatcaagccaatcggtcttcacggtgcagatgaagaactgagatccgttcgtgtttgca  18083800                                  --------->At4g35610                                <---------ZAT18                         <---------ARR14(2)                         <-----------HVH21                         --------->ARR14(2)                         <---------SPL7                    ===========================HOX2a_HOX2a                    ------>ZmHOX2a(2)                   --------->GLK1(1)                   <------ZmHOX2a(2)           ----------->HVH21   --------->ALFIN1        --------->DEAR3(1)    <---------MYB52(1)     --------->ANAC58  --------->LBD16     --------->ANAC58 <---------LBD16    --------->SPL7 ============================HOX2a_HOX2a                                          -  <---------SPL7   <---------GLK1(1)                                                                < <---------ANAC58 --------->ARR14(3)                                                               <- <---------ANAC58 <---------ARR14(3)                                                            <---- ------->LBD16    <---------ARR14(2)                                                 --------->DEAR3(1) ---->PIF5 --------->ETT(2)   <xxxxxxxxxxxxxxxxsmallRNA(se3)                        --------->DEAR4(2) -----PIF5 <---------ETT(2)--------->SPL7                --------->HSFB2a(2)       <---------At5g28300 ------>DEAR3(1)  --------->ARR11(3)            --------->GLK1(2)          --------->ARR14(2) <------ ------LBD16      --------->ARR14(2)      --------->HSFB2a(2)          --------->LBD16 ----------->RAV1(2) xxxxxxxx>smallRNA(s) --------->LBD16     <---------HSFB2a(2)         <---------ANAC46------>NtERF2<- ----->DEAR3(2)   <---------ARR11(3)    ------>ZmHOX2a(1)<---------HSFB2a(2)     <xxxxxxxxxxxxxxxxxxx ----->ATERF1(1) <------ZmHOX2a(1)<---------At4g35610    ------>ZmHOX2a(1) <---------ARR14(2) <------   ccggcgttcgccatcgacaggatccccggtccggtgtgcttcctctcgaaattctcgtcctcgaacttgctcccgtagatcgactcaccgcctgttccgt  18083900     --------->At5g28300     <------NtERF2                                                                           <-------    ----------->GT1                                                                        ----------    <---------MYB46(3)                                                                     ------>NtERF2   <---------DEAR3(1)                                                                     --------->DEAR3(1)  <---------ABI4(1)                                                                     ------>NtERF2  <------NtERF2                                                                       --------->DEAR3(2) ------>NtERF2                                                                       --------->SPL7 --------->LBD16                                                                    --------->ARR14(2) -------->ANAC46                                                                    <---------ARR14(2) ---------LBD16                                                                    <---------MYB52(1) --------HSFB2a(2)        ------->MYC3                     ------>ZmHOX2a(2)       <---------SPL7 -----MYB52(1)            <-------MYC3        --------->At5g28300                 --------->LBD16<--- ---ANAC58        ----------->RAV1(2)        ----------->GT1        ----------->HVH21<---------ATERF1(1) --------LBD16  ==============================HOX2a_HOX2a <------ZmHOX2a(2)      --------->HSFB2a(2) xxxxxsmallRNA(se3)  <-----------HVH21 <------ZmHOX2a(2) --------->ARR11(3)      <---------HSFB2a(2) ---ANAC58      ------>ZmHOX2a(1)     <-----------HVH21  <---------ARR11(3)     <---------LBD16 <----   tcccggcggtgaaatctcctccctggcacatgaagttagggatcacacggtgaaacttagatcccttgaagtgaaggggttttccggtaccgccaacacc  18084000                                                                                    <---------ANAC58                                                                                    <---------ANAC58                                                                                   <---------ZAT2                                                                                   --------->ZAT2                                                                             <---------LBD16                                                                        <---------HSFC1(2)                                                                        --------->HSFC1(2)                                                                        --------->HSFB2a(1)                                      <---------HSFB2a(2)               <---------HSFB2a(1)         <---------ZAT14              --------->HSFB2a(2)              <------ZmHOX2a(2)        --------->ALFIN1              ------>ZmHOX2a(1)               <---------ARR11(3)      --------->LBD16                --------->TOE1(2)         --------->REM1(1)  ------>NtERF2    <---------LBD16                  <---------LBD16       --------->At4g35610 <---------LBD16 --ALFIN1--------->ZAT14    <---------LBD16                <---------At4g35610 --------->LBD16 ->RAV1(1)               --------->GLK1(2)            <---------ZAT14 --------->ARR14(2) -------DOF2    --------->ZAT18   <---------RAP2.6(3) --------->ZAT14 <---------ARR14(2)         <--- -----DAG2      <---------ZAT14<------NtERF2        <---------------AtSPL3------>ZmHOX2a(1)<------NtERF2   tttctctccggtgcagagagctctgaaattctcggcagtcctgggagtcttatcggtgtacagctccatcacgatccttcccgcgggctggccgtcgatg  18084100                                                    ------>ZmHOX2a(2)                                                   <------ZmHOX2a(2)                                                   --------->GLK1(1)                                                  --------->ARR11(3)                                                  <---------ARR11(3)                                             --------->TOE1(2)                       --------->ANAC46     <---------O2                                <---------YAB1                       --------->ANAC58     =========================================MYC_MYB                       --------->ANAC58     --------->O2                         <---------ANAC46                      --------->SPL7        --------->TGA1a                    <---------ANAC46                  --------->HSFB2a(2)       <---------ANAC55(2)              <-------GAMYB              --------->TOE2(3)             <---------TGA1a                 --------->MYB52(2) --------HVH21--------->TOE1(3)      <---------ANAC46     --------->YAB1    <---------MYB46(3)   <---   gtcatgtcgaagtataccttagggaacgccattcttgttgtttgaaacgtgagatctctatcagactgaagaagaggtttgttgtggatgatgaatagag  18084200                                        <---------At4g35610                                        --------->At4g35610                                        --------->ATERF1(1)                             <------NtERF2  <---------ANAC46                   ----------->GT1                            --------->ORA47(1)                                --------->ALFIN1                            --------->LBD16<------NtERF2                     <-------MYC3       <----                            ------>NtERF2<---------DEAR3(1)                  ------->MYC3 --------->MYB52(1)                           --------->DEAR3(1)*TSS                       <-----------GT1--------->TOE2(3)                           --------->RAP2.6(2)      ----------->HVH21<---------ICU4  --------->GLK1(2)                           <---------RAP2.6(2)   <---------ARR11(3) <---------YAB1   --------->ARR11(3)       <---------MYB52(1)  --------->ATERF1(2)   --------->ARR11(3)<---------ARR11(3)<---------ARR11(3) ---ZmHOX2a(1)             <---------ATERF1(2)  <---------CCA1(2)  <---------GLK1(2) <-----------ARR10   gatttatcggtgaggttatcgatttatagccggccaaggggaagcggcgaatatctcacagataaacaagattattacatgtgggaaaatctcaacggct  18084300                  <------MYB46(1)                  ----------->GT1                  <------MYB83                 <-----------------------TaNAC69(2)                                      <-------MYC2                 --------->MYB59                                                         ------->MYC2                 --------->MYB46(2)                                                      ------->MYC3               <---------MYB52(1)                                                        <-------MYC3          ------->GAMYB                                                  <---------ARR14(2)        --        <---------At5g28300                                              --------->GLK1(2)         <-    ------>ZmHOX2a(2)                                                    <---------ARR11(3)        --   <------ZmHOX2a(2)                                             <-------GAMYB          <----------TaMYB80  <---------ARR14(3)                   <---------MYB52(1)       <---------ANAC58        <---------At4g35610  --------->ARR11(3)              --------->MYB52(1)            <---------ANAC58        --------->At4g35610  <-----------ARR10              --------->AtMYB61       <-----------HVH21             ---------->TaMYB80  <---------ARR11(3)             <---------ALFIN1       --------->WOX13(1)       <---------O2    ----  --------->ARR14(3)          <---------WRKY18(1)<-----------HVH21       --------->ARR11(3)      ==== ------DOF2  <---------MYB46(3) --------->MYB46(3)  --------->WOX13(1)   --------->ARR14(2)    <-----   ttaagatcttaaccgtggttaggttaagagtttgaccaccggttaagtaggggtcagtcagtcagtgcgttggagtatctcagacttggcatatgcccct  18084400                 <-------MYC4                 ------->MYC4                 <-------MYC3                 -------->ABF1                 ------->MYC3                 <-------MYC2                 ------->MYC2                <---------O2                --------->ANAC55(2)                <---------ANAC55(2)                                                     <---------MYB52(1)                --------->ANAC46                                                       <-----------HVH21                <---------TGA1a                                                       <---------ZAT6              <---------ALFIN1                                                <---------AHL20(2)            <-----------------PIF3(1)                                         --------->AHL20(2)            <---------ALFIN1                                                  --------->AHL20(1)        ------->MYC3                                                         <---------AHL20(2)        <-------MYC2                                                         --------->AHL20(2)        <-------MYC3                                                      <---------AHL20(2)        ------->MYC2                                                     <---------AHL20(2)       --------->TGA1a                                                   --------->AHL20(2) ---->ZmHOX2a(1)--------->TGA1a                                          <---------AHL20(1) --------HSFB2a(2)  --------->PCF2                              --------->TOE1(3)   <---------At5g28300 ------->HSFB2a(2) <-----------HVH21                            --------->YAB1<---------AHL20(1) ------->RAV1(2)--------->O2                                    --------->TOE2(3)  <-----------GT1 =======================RAV                              <----------DOF2 --------->AHL20(1)--------->At4g35610 ----ALFIN1 ----------->RAV1(1)                    --------->MYB52(1)   --------->AHL20(2) <---------At4g35610   cctggagcaacgtgccacacgtgtcccacaatttctaaacaacttgctaaaaacaacgtcttttaatcttaaaaattaattttatttactgtcagttcaa  18084500                                                                                          --------->ANAC46                      <----------DOF2                                                   <---------ALFIN1                <---------MYB52(1)                                                     <---------ZAT18              ----------->GT1                                                  --------->LBD16     <---------AHL20(2)                                     <-----------GT1   --------->ANAC46      <     --------->AHL20(1)          --------->ANAC58       --------->WOX13(1)<----------DOF2 <---------ALFIN1     --------->AHL20(2)          --------->ANAC58   <----------DOF2<---------YAB1      --------->ZAT18    --------->AHL20(2)--------->TOE2(3)       <---------AtLEC2--------->ZAT6 <---------LBD16     <---   attcaaaaaaattgaaccgttaaactttagtagtaacgcatactatatgcatgactttcaattaacactatcaatgctttgcgcaatagtccacccctca  18084600                                ----------->GT1                         --------------->AGL15              --------->ATHB12  <---------ZAT6             <---------YAB1    <---------TOE1(3)      <---------At4g35610<----------DOF2   ---------->ID1                                      ------      --------->At4g35610<---------------AGL15               <-------MYC3                      <-----     --------->MYB52(2) <-----------------AGL2------>ZmHOX2a(1)                               <------ ---------TOE2(3) <---------MYB46(3)      <-----------GT1    ------->MYC3                 --------->YAB1 ------YAB1  --------->ICU4    <---------TOE2(3)          <---------DOF5.7(2)   --------->GLK1(1)----   taaatgttagctgtaatgagtggttttctttttagggttaaatttttcctcatagtaagtaaacgtgttcaagagtagagggaattcaaaaatcagaata  18084700  Previous    Next  AGI:  At4g38740.1    Description:  ROC1 (rotamase CyP 1); peptidyl-prolyl cis-trans isomerase. Identical to Peptidyl-prolyl cis-trans isomerase CYP18-3 (CYP18-3) [Arabidopsis Thaliana] (GB:P34790); similar to peptidyl-prolyl cis-trans isomerase / cyclophilin (CYP2) / rotamase [Arabidopsis thaliana] (TAIR:AT2G21130.1); similar to unknown [Populus trichocarpa x Populus deltoides] (GB:ABK96333.1); contains InterPro domain Cyclophilin-like (InterPro:IPR015891); contains InterPro domain Peptidyl-prolyl cis-trans isomerase, cyclophilin-type; (InterPro:IPR002130) Range:  from: 18083389    to: 18084245    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version