Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                 ---------->DOF2                                                                            --------->MYB59                                                                        <---------ZAT6                                                                      <---------ANAC46 --------ANAC58                                ----------->RAV1(2)    <---------ANAC58 --------ANAC58                              <---------ARR14(2)       <---------ANAC58 --ANAC55(2)                            ---------->DOF2           --------->CCA1(2) --ANAC46                    ---------->DOF2 --------->ARR14(2)----------->ARR10                  <-- -TOE2(3)        <------ZmHOX2a(1) ---------->DOF2          <------ZmHOX2a(1) <------ZmHOX2a(1) -----   tgcgagcctcgttcaaacaggaatggattcagaaagaaaaagaaaaggaacctgaaggctgaggagagatttgagtgttaggaaagagagaagaggcaag  18025200                                                 --------->LBD16                                                 ------>NtERF2                                                 <---------ATERF1(1)                                                --------->ATERF1(2)                                                <---------ATERF1(2)                                                <---------DEAR3(1)                                               <---------ANAC58                                               --------->ATERF1(1)                                               <---------ANAC58                                              <------NtERF2                                              <---------ATERF1(1)                                             <---------MYB46(3)                                             ------>NtERF2  --------->At4g35610                                            ----------->HVH21                                           <---------MYB52(1)                                           <-----------HVH21<---------ZAT2                                          --------->LBD16<---------ANAC58                      ------                                         <---------DEAR3(1) <---------At4g35610                <-----                                        <---------LBD16  <---------ANAC58                    --------                                       ------->GAMYB  <---------DEAR3(1)                     <------NtERF2                                     -------->P<---------ANAC46                      --------->At4g35610                                  <------NtERF2<---------ORA47(1)                *TSS----------->RAV1(2)                                 --------->RAP2.6(2) --------->ATERF1(1)      <-------MYC3  <--------         <<<<<<<<<<<<<<<<<LFY  --------->At4g35610 <---------DEAR3(1)         ------->MYC3 --------->ALFIN1   ---------->DOF2             <---------At4g35610<------NtERF2          --------->ANAC58  <---------ANAC58 --------ID1       ------>ZmHOX2a(2)<---------ATERF1(1)  <---------ANAC46--------->ANAC58  <---------ANAC58 ------>GT1<---------ALFIN1<-----------HVH21--------->ALFIN1--------->ZAT2  ------->TEIL   <---------DEAR3(1)   gtgacaaaagttcccactggatcgaatcgcatcagcggcaaccccggtggccggcgatggcgagcagcgatgaagacgcatgtgatcatctgggcggggc  18025300       <---------TOE1(3)       <---------TOE2(3) --->ZAT2                                 --------------->AGL15           <---------PCF2           -- ----ZAT2<------ZmHOX2a(1)         <----------DOF2                        --------->PCF2           <- ->ATERF1(1)                   <----------DOF2<---------AHL20(2)    <----------DOF2          -------- -ATERF1(1)        ------>ZmHOX2a(1)   <-----------GT1       ----------->HVH21            <------ZmHOX2a(1)   tgggtttttaaggaatttctcctctatttgggcctttcttttttctattttaaggcccattttgtgactgcttatgggcccatttgaatacaggagaaag  18025400                        <---------At4g35610                        --------->At4g35610                       <---------MYB46(3)                                    <------ZmHOX2a(2)                      <--------P                                            <---------AGP1                    --------->ATHB12                                        --------->AGP1                    <---------MYB46(3)                                      <---------ARR11(3)              --------->ANAC58                                              <---------ARR14(2)              --------->ANAC58                                              --------->ARR14(2)              --------->ANAC46                                              --------->ARR11(3)         <---------WRKY18(1)   --------->O2----------->GT1        --------->ANAC55(2) <------NtERF2--------->bZIP60(2)     --------->YAB1              <---------ANAC55(2) ------->RAP2.6(2) <---------YAB1   <---------WOX13(1)          --------->YAB1------>ZmHOX2a(2)     < --------ETT(2)    --------->ICU4 --------->ATHB12             <---------ATHB51      ----------->HVH21 -->DOF2--------->WRKY38(1)------>NtERF2 ---------->DOF2       --------->ICU4--------->CCA1(2) ------   gtcgccactattgaccaagtcatggttgctgccacttgattgataaagaaaaacgaaaacaaacaattatgtgatttagatctgagtctgaccaatattg  18025500                                      ------------>CBF                               <---------AHL20(2)                               --------->AHL20(2)                            <--------ATHB1                                                          -                            --------->ATHB51                                                        -         <------ZmHOX2a(1)  <---------ICU4                                                      <----    <----------DOF2         --------->AHL20(2)     --------->ATHB12                             ----- --------->ARR11(3)         <---------AHL20(2)    <---------ATHB12                    <---------ANAC58 <---------ARR11(3)        --------->ICU4    <<<<<<<<<<WRKY63           ------------>CBF       ------ ---------CCA1(2)          <---------ATHB51--------->YAB1           <----------DOF2   <---------ANAC58 ----->GT1               --------->YAB1  <<<<<<<<<<<<WRKY18 <---------YAB1 <------------CBF   -------   ttatatctttaggaatttgtttgtttgtaataatttataagtcaatagtcaaatgaatggttatcgtagacttttccaattgccattttcttgtttataa  18025600    --------->TOE2(3)          ----------->HVH21 -------->CCA1(1)            --------->At4g35610 -------->RVE1(1)            <---------At4g35610 -----AHL20(2)               *TSS                     --------->YAB1                                < ---->AHL20(2)            ------>NtERF2    --------->ARR11(3)                                     --- --->YAB1                <---------PCF5   <---------CCA1(2)               ----------->HVH21    ------ ---->TBP           ---------->DOF2     --------->AHL20(2)  <-----------GT1  <---------ANAC46  ------   aaatatccataatacacagacttaaaggggcctctgactccattatatctatcgaatcatatataccagtcgtagtatgacgcgttgaagaacagaaacg  18025700                                       --------->ZAT2                                       <---------ZAT2                                <------ZmHOX2a(2)                               <---------ARR11(3)                               --------->AGP1--------->ANAC58                               --------->ARR14(2)                               --------->ARR11(3)                                           ---------                               <---------ARR14(2)                                           ---------                               <---------GLK1(2)                                            ---------                             ----------->ARR10                                      <----------------         --------->DAG2   --------->TOE2(3)  --------->ANAC58                      <-----------GT1        ---------->DOF2   <----------DOF2    --------------->AtSPL8            <---------YAB1--------   ------->TEIL     ------>NtERF2      --------->At4g35610          ------>ZmHOX2a(1)<---------YAB1 ---------MYB52(2)  --------->LBD16    <---------At4g35610         <---------MYB59--------->ICU4 ------>MYB52(1)   --------->ANAC46   ----------->RAV1(1)      <---------GLK1(1)--------->YAB1 --->ANAC58        <---------ETT(1)------>ZmHOX2a(1)           --------->GLK1(1)<---------ICU4------- --->ANAC58       <---------LBD16------>ZmHOX2a(2)          <---------YAB1     <---------AHL20(2)   aaacgaaccaaaaagtcttctccggcaactttagatcctccagcagcaaggtactcactcttatgaattcctaacatatgtataattactatacaaccaa  18025800                                                                       ------->GAMYB  --------->ICU4                         <------ZmHOX2a(2)            ----------------->AGL2 >ANAC58                                 ==========================HOX2a_HOX2a                   ---- >ANAC46 <---------ANAC58          ------->GAMYB   XXXXXXXXXXXXXXXXXXXX>MIR773B               ------- >ANAC58 <---------AtLEC2         --------->MYB46(3)                  <-----------------AGL1  ------- -----WRI1                 --------->LBD16     <-----------GT1   --------->TOE2(3)            ------- ->MYB46(3)         <---------TOE1(2)   --------->ARR11(3)  ------>ZmHOX2a(1)                 ------- >GAMYB  <---------ANAC58<---------LBD16<---------ARR11(3)  <----------DOF2     ------->TEIL---------   ggtactaatttgcatgccttcttatgttccggtctaaccacagatcatttctcaatcccatcctttgcctcaacccaatatggacttcttcacttcaagc  18025900                                     <----------DOF2                                     <---------DAG2                                    <---------------AGL15                                   <-----------------AGL2                                   <-----------------AGL1                                   ----------------->AGL2          --------->ICU4                                   ----------------->AGL1      <---------RAP2.6(3)                                   ----------------->AG        --------->LBD16                                   <-----------------AG<---------YAB1                                   <-----------------AGL3     --------->RAP2.6(2)      ---------->DOF2              ----------------->AGL3     --------->ANAC46 ------>DOF2               ----------->GT1            --------->ARR11(3) -->ANAC58                 --------->At4g35610        <---------ARR11(3)  --------->ZAT6----------->GT1 -->AtLEC2                 --------->ANAC55(2)       --------->YAB1----------->GT1      <------MYB46(1) -->ANAC58               <-----------RAV1(2)        <---------TOE2(3)   <-----------GT1 <------MYB83 -->ANAC46            --------->YAB1--------------->AGL15    <---------LBD16           --------->ALFIN1 ->DOF2     ----------->GT1<---------ANAC55(2) --------->GLK1(2)<------NtERF2          <---------AtMYB61   aaagctaagaaagatagcaaaaaatcatcaggtaactcccttttttgggaatctaagataatagccggaatgtttaactctcgctggggatggtgaaaga  18026000                                                     --------->ARR14(2)                                            ------>ZmHOX2a(1)<----------DOF2                                      <---------YAB1 <---------ARR14(2)                              <-----------GT1       <---------CCA1(2)               --------->ANAC58                 ==================================HOX2a_HOX2a                      --------->ANAC58                 ------>ZmHOX2a(2) <---------YAB1   <---------GLK1(1)        <----------DOF2    -----   <----------DOF2 ------>ZmHOX2a(1)--------->YAB1  --------->GLK1(1)   <------ZmHOX2a(1)   <--------   ctagactttctcaaactgatcctatttagtatttactatcatcatcctcttagcatatccaaactttctcttcaggactctttggcaagaaaactgtcag  18026100  Previous    Next  AGI:  At4g38545.1    Description:  other RNA Range:  from: 18023016    to: 18025281    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At4g38550.1    Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G20950.1); contains InterPro domain Phospholipase-like, arabidopsis (InterPro:IPR007942) Range:  from: 18025629    to: 18028794    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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