Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                              --------->ZAT6                                                           --------->ZAT18          <---------HSFB2a(2)                            <---------ZAT18          --------->HSFB2a(2)                            ------->GAMYB----------->HVH21      <---------ANAC58          --------->ZAT6     --------->YAB1   --------->ANAC55(2)      <---------ANAC58       <---------At4g35610  <---------YAB1    <---------ANAC55(2) <----------DOF2             --------->At4g35610<----------DOF2 --------->YAB1              <--------   gggctttggcttccagtaactctcaagagtcatcacactagttattttgactttgataacgcacactaataagtgacctctctctctctctcttcttttc  17954300                                        --------->ATHB12                                 <----------DOF2                                <----------DOF2                           <---------At4g35610                               ---------->DOF2                      <-----------GT1 <-----------HVH21                      --------->YAB1          <---------DAG2   --------->At4g35610<---------ANAC58              --------->ICU4 --DOF2   <----------DOF2  ----------->RAV1(2)<---------ANAC58              <---------ATHB12   ttatctacagtacttttttttggtttaccatctgcctttctgtcattggcttcttcagaaacaatttctaaatttgcaataaagagtgtttgaaacttga  17954400                               <---------ANAC58                        <---------AtLEC2                       --------->ALFIN1                             <----------DOF2              <----------ID1   <---------ANAC58                   <---------HSFB2a(1)            --------->MYB52(1)<-------TEIL     <---------YAB1     --------->HSFB2a(1)     XXXXXXXXXXXXXXXXXXXX>MIR3933            <---------ICU4     <---------GLK1(2)              <-----    ----------->GT1   <------ZmHOX2a(1)      --------->YAB1  --------->HSFB2a(2)      --------->ATHB12  --------->ZAT14   <---------TOE2(3)       --------->ICU4<----------DOF2     --------->MYB46(3)-----   gaagtgaagtaaaataacgactaaggaggggatgcatgcttataccattatgacatgttccttttggaatctttcatggaatcacccttgattagtgatt  17954500                                                <----------DOF2                                              <---------ANAC46                                           <---------MYB52(1)                                         <---------ANAC58                                         --------->MYB52(2)                      --------->AHL20(1)                        <---------ANAC46 <---------ANAC58        <------ZmHOX2a(1)   ----------->GT1        <---------AHL20(2) ---------->DOF2<-------GAMYB         ----------->GT1  --------->ARR11(3)     ------->TEIL   <---------YAB1    <----------DOF2   --------------->AGL15   <-----------TBP ----YAB1      <---------TOE2(3)     <---------ANAC58   <---------------AGL15  ------->TEIL <-------TEIL ---->AHL20(2)---------->DOF2        <---------ANAC58<-----------GT1  --------->AHL20(2)<------------   atatatgtattttttttaaagtattatcgtgaagccctagctttcgttgcctttataacctatagtaggaaataaaaaatgaatatatagtaagtacatc  17954600                                        <---------LBD16                                    -------->P                                    ------>MYB46(1)                                    ------>MYB83                                 <---------MYB55(2)                                 --------->MYB46(3)                                 <---------MYB111(1)                                --------->ANAC46                                --------->ANAC58                                --------->ANAC58                                ------>MYB46(1)                              --------->AtMYB61                    --------->YAB1 <---------ALFIN1                   <---------ATHB12------>MYB46(1)                   ------------>CBF------>MYB83                                            --------->ICU4               ------------>CBF ------>MYB83    <-------TEIL                            <---------AHL20(2)         <---------At4g35610 --------->MYB46(3)--------->GLK1(2)           <---------AHL20(2)     ---       <---------ANAC58    --------->ANAC46   <---------ARR14(2)     --------->AHL20(2) --------->AHL20(2)       <---------ANAC58----------->TBP------->GAMYB    <----------DOF2    --------->AHL20(2)<-------- ---AtSPL8 <---------YAB1  <-----------GT1   --------->GLK1(1)   <---------YAB1      ----------->GT1   gactcgagtgcttctgatacaatcaatataaaccacccaaccctcggagattcagaactttggatttttgattatataaaatttgaatagttaattagta  17954700                                     --------->ANAC58                                   --------->MYB46(3)                             --------->ANAC58                             --------->ANAC58                            <---------ZAT18           <----------DOF2 <---------ALFIN1      --------->ANAC46          XXXXXXXXXXXXXXXXXXXX>MIR2938      --------->ARR14(2)        <XXXXXXXXXXXXXXXXXXXXMIR2938 --------->ANAC58                      ------>ZmHOX2a(2)       --------->TCP15(1) --------->ZAT14   <---------GLK1(2)             <------ZmHOX2a(2)       <---------PCF2 --------->GLK1(2)    --------->HSFB2a(1)           --------->ARR14(2)    --------->ALFIN1 --------->ARR11(3)------->GAMYB                 <---------LBD16  <---------YAB1 ------>ICU4         <---------GLK1(2)--------->MYB46(3)       <<<<<<<<<TBF1    <---------MYB46(3) -ICU4----------->HVH21   <---------ZAT18 <---------ATHB12  <<<<<<<<<TBF1<---------ARR14(2)   tttatggtgggaccttttaaaaagattctgcacgctcacaaccaaagattccctccatcttcttcttcttctctggatccagttgttgatgattcttcaa  17954800                                  <---------At4g35610                                  <---------CCA1(2)         --------->ARR14(2)                         <---------ANAC58                   <---------GLK1(2)                  ------>ZmHOX2a(1)                         <---------ARR14(2)                -------            <------ZmHOX2a(2)   --------->REM1(1)        --------->ANAC55(2)           <---------ANAC58            =============HOX2a_HOX2a                     <---------ANAC55(2)           <---------ANAC46           --------->ARR11(3)<---------ANAC58       --------->ANAC46             <---------AHL20(2)           <---------ARR11(3)<---------ANAC58     <---------ALFIN1         <-----------GT1    -------          --------->YAB1 <---------ANAC58        <---------REM1(2)      <----------DOF2<---------ANAC58   gaaaacaaacaaggatcatcctctcttacttgcttcatctctctctctctctacacattacatattctctctgtcttttacatttttttgtgtgtatata  17954900                                                                                   --------->ARR14(2)                                                                              ------>NtERF2                                                                            --------->ATERF1(1)                                                                            <------NtERF2                                                                            <---------At4g35610                                                                            --------->At4g35610                                                                           <---------RAP2.3(1)                                                                           <---------ATERF1(1)                                                                          <---------DEAR3(1)                                                                         <---------ORA47(1)                      <---------AHL20(2)                                 --------->RAP2.6(3)                      <---------AHL20(1)                                <-----------HVH21                     --------->YAB1                                   <---------AtMYB61           <----------DOF2                                        --------->At4g35610     --------->WOX13(1)         <---------YAB1       <-----------GT1                     <---------At4g35610    --------->MYB46(3) -->AHL20(1)        <---------AHL20(2)      --------->ANAC55(2) <-----------RAV1(2)<---------ARR14(2) -->ARR11(3)       --------->AHL20(2) <---------RAP2.6(3)      <-------TEIL<---------DEAR3(2)   ttgttcttgttatctttgatatataatatttgtaactggccgatatatgtaatggattagatagattcagatgaggtcggctccaaatccatccatcaaa  17955000                                                                                  <---------At4g35610                                                                       --------------->AGL15                                                                       <---------------AGL15                                                                      ----------------->AG                                                                      <-----------------AGL3                                                                      <-----------------AGL2                                                                      <-----------------AGL1                                                            <---------At4g35610   --------->At4g35610                           <---------WRKY18(1)              --------->At4g35610   <---------ZAT2                          ----------->HVH21                 --------->ZAT2        <------NtERF2              --------->ANAC58                           <---------At4g35610     <<<<<<<<<AtERF-4              --------->ANAC46                           --------->At4g35610     <<<<<<<<<AtERF-3              --------->ANAC58                      <---------YAB1    <-----------------AG --------->YAB1  --------->CCA1(2)<---------ANAC46<---------AHL20(2)  ----------------->AGL2       --   catttataaaaaaaacaagctatggggtttgaccttgtgggcaattgggtttttattttagctgctgacttatcccattttggcagctcttctgtttgac  17955100          --------->DAG2         ---------->DOF2       --------->YAB1       <---------AHL20(2)       --------->AHL20(2)                             <------ZmHOX2a(1)    --------->YAB1            <-------GAMYB     --------->ANAC58   <---------AHL20(2)       <---------ANAC58    --------->ANAC58   <---------YAB1           <---------ANAC46  --------->TOE1(2)            <---------ANAC58  <---------AHL20(1)        <---------ANAC58  ------->GAMYB                <---------ANAC58  --------->AHL20(1)       <------NtERF2     --------->MYB46(3)         <-------MYC2  --------->AHL20(2)     <---------DEAR3(1) --------->ANAC58            <-------MYC3  <---------AHL20(2)    <---------MYB52(1)  --------->ANAC58            ------->MYC3    <----------DOF2 ------->AHL20(2)     <---------MYB46(3)  --------->MYB46(3)            ------->MYC2<---------CCA1(2)   ataatataataaaaagggagggagtcgttggcgtttgatattgaacaaccaaggaaggagagcctatcaaaccacatgcttgcatcatctcttttagcca  17955200  Previous    Next  AGI:  At4g38340.1    Description:  RWP-RK domain-containing protein. similar to RWP-RK domain-containing protein [Arabidopsis thaliana] (TAIR:AT1G76350.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO66237.1); contains InterPro domain Plant regulator RWP-RK (InterPro:IPR003035); contains InterPro domain Octicosapeptide/Phox/Bem1p (InterPro:IPR000270); contains InterPro domain GAF (InterPro:IPR003018) Range:  from: 17954704    to: 17957822    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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