Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                           ------>ZmHOX2a(2)     --------->At4g35610                           <------NtERF2         ============================  --------->ZAT2                                  ------>NtERF2         --------->GLK1(1)  <---------At4g35610                             <---------RAP2.6(3)   <------ZmHOX2a(2)  <---------ZAT2                                  --------->LBD16       =============================  --------->At4g35610                  <---------ZAT14                  <---------GLK1(1) -----------RAV1(2)                    --------->ZAT18                 --------->AGP1 --------->ANAC58 --------At4g35610                    <---------ATERF1(1)              <-----------ARR10       ------ ------->LBD16                       <---------DEAR3(1) <---------ZAT2 <---------AGP1 --------->ANAC58 ------>ANAC46                      <---------ANAC58    <---------At4g35610         ---------->DOF2 ------LBD16                 <---------At4g35610 --------->RAP2.6(2)   --------->ARR14(2)   ------>NtERF2 --->ARR14(2)             <-----------------AGL1 <---------ATERF1(2)   <---------ARR11(3)  --------->DEAR3(1) ----ARR14(2)          <---------GLK1(2)         --------->ATERF1(2)   <---------ARR14(2) --------->ATERF1(1) -->ZAT2              --------->At4g35610       --------->ATERF1(1)    --------->ARR14(3) --------->DEAR4(2) ->ANAC58             --------->ZAT2<---------ANAC58 ---------->DOF2   --------->ARR11(3)<---------ATERF1(1) --->ARR10            <---------At4g35610--------->At4g35610          <---------CCA1(2) ------->GAMYB ->ANAC58  ----------->RAV1(2)<-----------HVH21 <---------LBD16 ------>NtERF2     --------->ANAC46---   ccgcagctgcttcccctgttgaacagcttcccgctcaggcctgcgctgtagccggcaaagctgctctgcctcagatctccatacccacaagcgcctccta  17923600                                                                                            <--------                                                                                           --------->RAP2.3(3)                                                                                           --------->RAP2.3(2)                                                                                           --------->DEAR3(1)                                                                                          <------NtERF2                                                                                          --------->RAP2.3(1)                                                                                          --------->ATERF1(1)                                                                                         <---------ATERF1(1)                                                                                        <---------ARR14(2)                                                                                        --------->ARR14(2)       <---------ATHB12                                                                --------->ATERF1(1)     --------->WOX13(1)            ---------->DOF2                                     <------ZmHOX2a(1) =HOX2a_HOX2a               ---------->DOF2                                          --------->ALFIN1 =HOX2a_HOX2a             <---------YAB1                                            <------ZmHOX2a(1) >ZmHOX2a(1)           --------->ICU4----------->GT1         ---------->DOF2   <---------ANAC46 ------>YAB1           ------>ZmHOX2a(1)>>>>>>>>>>GT-3b ----------->GT1     ----------->HVH21   tcagaaccaattagtctagttagtcctgatgaaagaagaaagaaaaataggggggagagagagaaaagagaaccagtagcgacggaggaggagccgtctc  17923700                                                             --------->At4g35610                                                             <---------At4g35610                                                             <------NtERF2                                                             --------->ATERF1(1)                                                            ----------->RAV1(1)                                                            <---------RAP2.3(1)                <---------MYB46(3)                          ------>NtERF2                <-----------RAV1(1)                        <---------DEAR3(1)          <---------ANAC58                                 <---------ATERF1(2)          <---------ANAC58                                 <---------RAP2.3(2)      ---------->DOF2                               ---------->DOF2   <---------HSFB2a(2)                          <---------ANAC58   --------->HSFB2a(2)                          <---------ANAC46   <---------HSFC1(1)                           <---------ANAC58<------NtERF2                --------   --------->HSFC1(1)              <---------At4g35610     <---------RAP2.6(2)         <---------ANAC58 -RAP2.6(3) --------->ALFIN1       --------->At4g35610     --------->ATERF1(2)         <---------ANAC58   tgtctctagaaagcgtggctgtggctatcttccagtcatcttcggcagtggcttgaaagaggcggcagagaatgaagaagaggcacaatgcgagttgctg  17923800                                                       <------NtERF2                                                   ======================bZIP_DOF                                                 <-----------RAV1(2)                                              ----------->HVH21                                             <-----------HVH21                                    ------>ZmHOX2a(1)--------->ALFIN1                                  ------>ZmHOX2a(2)--------->ZAT2                                 <------ZmHOX2a(2) --------->O2           --------->AtLEC2     --------->ARR11(3) <---------O2                                 <----      --------->ARR14(2)        <---------ARR11(3) <---------ZAT2      <---------ANAC58     ---------      <---------ARR14(2)        <---------ARR14(2) --------->TGA1a     <---------ANAC46     <--------      --------->GLK1(2)         --------->ARR14(2) <---------TGA1a     <---------ANAC58    --------->GLK1(1)     <---------GLK1(2)   <---------MYB46(3) --------->WOX13(1) --------->DAG2             <---------MYB46(3) ->At4g35610          --------->ALFIN1   <-----------HVH21    ---------->DOF2          <---------LBD16   aagcccagaatccatgaacaagaagtgttgttgggatcctcacagtcagtcacaggtggcagacaaaagtgatgcgtttgagagagttttgggggttcct  17923900                                                                                                 ----                                                                                              -------                                                                                             <-------                                                                                            <--------                                                                                            ---------                <----------DOF2                                                             ---------                <---------DAG2                                                             --------->YAB1   --------->YAB1                                                    ----------->HVH21    <---------ATHB12 ------DOF2 <------NtERF2             ----------->RAV1(1)          <----------DOF2        <---------ATHB51 >ARR14(2)--------->ARR14(2)         <----------ID1                *TSS               ------------>CBF -ARR14(2)<---------ARR14(2) <---------ANAC46        ----------->HVH21          <-----------HVH21----   tttgatcatcaggctccgcttttcaagacttgtggggatgcgacaaaagattgctctgacatgttttgactttgacagtccgtttcagaccaattataat  17924000                                                                 --------->ANAC58                                                                 --------->ANAC58 <----------ID1                                            ------------>CBF ----->AHL20(2)                                          <----------DOF2 -->YAB1 --------->DAG2                            <---------PCF5--------->ANAC46       --------->ANAC46 --YAB1 ---------->DOF2                            --------->PCF2<----------ID1         --------->ANAC58 -AHL20(2)                                         --------->ATERF1(1)                  --------->ANAC58 >AHL20(2)                                        <---------ATERF1(1)                 --------->CCA1(2) >AHL20(1)                     --------->HSFB2a(2)<-----------TCP11(1)      --------->YAB1 ----->YAB1     --------->MYB46(3)   <---------ALFIN1 <---------ALFIN1    --------->GLK1(2)       ---   aaaaaaacaaaaaagggaacaactatacgttttccaggcccatctcattcggaggcccactttcaatacgacacagaatcaagacaagagacgcaagacg  17924100                                                                                                    <                                                        --------->AHL20(2)                          -                                                        --------->AHL20(1)                          -                            --------->ZAT18             <---------AHL20(2)                          <                            --------->PCF2         <---------AHL20(2)                              --                            <---------ZAT18        --------->AHL20(2)                      <---------DAG2                            <---------PCF2         --------->AHL20(1)                      <---------                            --------->PCF5         <---------AHL20(1)            --------->ZAT14 <--- ---->TEIL <----------DOF2  <---------PCF5      --------->YAB1                 --------------->AtSPL8   aacttcttgagcccttttgttaattcaatgggccctcactaagaagcccataataaaataaaataagttctattttcaaacattgtactattactttttg  17924200    <---------ANAC58                                  <---------ICU4    <---------ANAC58                                  --------->YAB1    <---------ANAC46                                  <--------ATHB1   <---------DEAR3(1)                                 --------->ATHB12 ---------ATERF1(2)                                  <---------YAB1 -------->MYB46(3)                                   --------->ICU4                  <---------ATHB12 -------->ATERF1(2)                                  <---------ATHB12           --------->YAB1 ---------RAP2.6(2)                             --------->ANAC58               <---------YAB1 ------->DEAR3(2)                               --------->ANAC58             <---------ICU4         < -DOF2                  --------->ARR14(2)     --------->DAG2               --------->ICU4          < --------GT1            <---------ARR14(2)    ---------->DOF2           --------->YAB1            ---   taccggccgtgtttattcaattctcgtatttgtaagaatttataaacaaaaagcaatgattaaaacatttacaatgacattatgacaatgaattcgaatg  17924300      --------->ANAC46        --------->AHL20(2)      --------->ANAC58        <---------AHL20(2)      --------->ANAC58        --------->AHL20(1)       --------->AHL20(2)                         --- ----------DOF2          <---------AHL20(2)         <----------DOF2                       <---------AHL20(2) ---------DAG2           --------->AHL20(2)  --------->TOE2(2)                            --------->AHL20(2) ---->TEIL       ---------->DOF2             --------->TOE1(2)   ----------->GT1     ---------->ID1 <   tacttttcaagtcactcgtaaaagaatataaattttttaagagataacataagacttttaaatcgataagtgaataacatagagtttgtcattttaatac  17924400                                                          <XXXXXXXXXXXXXXXXXXXXMIR847          ------                                                        ------>ZmHOX2a(1)                    <-------           <--------HAHB4                              <---------------AGL15                <--------           <---------ICU4                             ----------------->AG              <----------DOF2          --------->ICU4                              ----------------->AGL1        <---------At4g35610          <---------ATHB51                       --------->YAB1                    --------->MYB52(1)         <---------MYB52(1)                      <---------ICU4                   --------->ALFIN1 ------>ANAC46                                  <---------ATHB12               <---------TOE2(3)<---- ---------ATHB12                                --------->ICU4        ----------->GT1 <---------MYB46(3)   aaatcactgccgataattagactgaaatggaagaaaatcagacggagacaatgatgtccttaaggggaagaagagtgaaatgaggtagcggtttgaggtg  17924500  Previous    Next  AGI:  At4g38210.1    Description:  ATEXPA20 (ARABIDOPSIS THALIANA EXPANSIN A20). Identical to Expansin-A20 precursor (EXPA20) [Arabidopsis Thaliana] (GB:Q9SZM1); similar to ATEXPA16 (ARABIDOPSIS THALIANA EXPANSIN A16) [Arabidopsis thaliana] (TAIR:AT3G55500.1); similar to unknown [Populus trichocarpa] (GB:ABK93538.1); contains InterPro domain Expansin 45, endoglucanase-like (InterPro:IPR007112); contains InterPro domain Rare lipoprotein A (InterPro:IPR005132); contains InterPro domain Expansin/Lol pI; (InterPro:IPR007118); contains InterPro domain Expansin; (InterPro:IPR002963); contains InterPro domain Pollen allergen/expansin, C-terminal (InterPro:IPR007117); contains InterP Range:  from: 17922750    to: 17923967    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At4g38215.1    Description:  other RNA Range:  from: 17923326    to: 17924246    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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