Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                           <------NtERF2                                                                        <---------DEAR3(2)                                                                        <---------MYB46(3)                                                                       <---------DEAR3(1)                                                                       <---------ANAC46                                                                      --------->ATERF1(1)                                                                      <---------ABI4(1)                                                                      <------NtERF2                                                                     <---------DEAR4(2)                                                                     <---------ORA47(2)                                                                     <---------ERF1                                                                     <---------RAP2.3(1)                                                                     <---------RRTF1(1)         <------NtERF2                                     <---------ARR14(2)        ------>NtERF2                                      --------->ARR14(2)       <---------DEAR3(1)                         ------>ZmHOX2a(2)  <---------ATERF1(1)       --------->DEAR3(1)                         ====================HOX2a_HOX2a      --------->ATERF1(1)                        =====================HOX2a_HOX2a      <------NtERF2                             --------->ARR11(3)   ------>NtERF2----------->RAV1(2)     <---------ATERF1(1)                        <---------ARR14(3)  <---------DREB2C(2)     ------>NtERF2                              --------->ARR14(3)  --------->ALFIN1 <---------LBD16    --------->ETT(2)                            <-----------ARR10   <---------RRTF1(3)    <---------DEAR3(1)                          <---------ARR11(3)  <---------RAP2.3(3)    ----------->HVH21                           <---------AGP1      <---------RAP2.3(2) ------->YAB1                                   --------->ARR14(2)  <---------DEAR3(1) ----->ANAC58                             --------->HSFB2a(2)   <-----------RAV1(2) ------>ZmHOX2a(1) ----->ANAC58                             <---------HSFB2a(2)  ------>ZmHOX2a(1) <---------ATERF1(1) -->WRKY18(1)                      --------->REM1(1)  --------->At4g35610<---------SPL7 ---MYB52(1)                 ------>ZmHOX2a(1)  <---------ARR14(2)  <---------ATERF1(2)            -- ----HVH21 <-----------HVH21 ============================HOX2a_HOX2a--------->ATERF1(2)          <--- --RAP2.6(3)<---------MYB52(1)  --------->TOE2(3)<------ZmHOX2a(2)  <---------RRTF1(2) --------->LBD16 >RAP2.6(2)<----------DOF2   ===========================HOX2a_HOX2a--------->ATERF1(1)<---------ANAC46   agcatggcgacggcgttagggatgagacctccttccttcatcttcttgaagatctcatcggaatcctcaggcggcggtaagggctcctgcgggtattgtt  17901800                        --------->ATHB12                       <---------YAB1                       ------>ZmHOX2a(1)                                                           <-               --------->LBD16                                  ----------->HVH21                  <-              --------->LBD16                                <-----------TGA1                   <----         <---------GLK1(1)                                   <-----------HVH21               <-------         --------->GLK1(1)<---------WOX13(1)          --------->ANAC58                      ---------    <---------LBD16--------->ARR14(2)            <---------HSFB2a(2)             <---------DAG2<-----   --------->ALFIN1<---------ARR14(2)            --------->HSFB2a(2)          <-----------GT1-------- ------->LBD16<---------ANAC46      --------->ZAT2    --------->ANAC58 <---------ZAT14   <---------TOE2(3) ------LBD16 <---------LBD16        <---------ZAT2  <------ZmHOX2a(1)  --------->ZAT14   <---------TOE1(2)   ccggtttgggggtttcccgtgaatcctgattgactccaagcttgaactgttcgaggaagccatcgtcagacagagtagtatcactctttccaaggttgtg  17901900                                                             <---------ANAC58                                              --------->ANAC46          <---------HSFB2a(2)                                              --------->ANAC58          --------->HSFB2a(2)             <---------MYB46(3)               --------->ANAC58      --------->ZAT18             <------MYB83            ------>ZmHOX2a(2)       <---------ANAC46             <------MYB46(1)        --------->GLK1(1)        <---------ANAC58         --------->MYB55(2)         <---------GLK1(1)        <------MYB46(1)        <---------ANAC46            <------ZmHOX2a(2)        <------MYB83          --------->At4g35610        <---------ANAC58           <-----------ARR10        <---------MYB46(3)     <---------At4g35610 --------ANAC58                    --------->ARR14(3)       --------->MYB59       <-----------RAV1(1) --------ANAC58                    <---------ARR14(3)      <---------ANAC46    --------->ARR14(2) -----ZAT18 --------->ALFIN1       --------->ARR14(2)     <---------MYB52(1)   <---------ARR14(2) --MYB46(3) <---------AtMYB61      --------->ARR11(3)    <-------GAMYB <---------LBD16<---------At4g35610 >ALFIN1<---------ANAC58           <---------AGP1       <---------MYB46(3)   --------->HSFB2a(1) ----ANAC46<---------MYB52(1)      <---------ARR14(2)   <-----------RAV1(1)  <---------HSFB2a(1)  <-- ->ALFIN1<---------MYB46(3)        <---------ARR11(3)   <---------DEAR3(2)   <---------HSFC1(2)  ----   ggcttgtctagcgggtggttctctgtgagagttggaagatctctcccctcgcaagggtctgttgggtaagggctctggagggttctgctgctcgtctact  17902000                                                         --------->ARR14(2)                                                         --------->GLK1(2)                                            <---------DEAR3(1)                                            <---------ANAC46                                            --------->DEAR3(1)                                           --------->ATERF1(1)                                           <------NtERF2 <---------ARR14(2)                                 ------>NtERF2        --------->ANAC58                                --------->LBD16       --------->ANAC46             <---------MYB52(1)<---------ANAC46       --------->ANAC58            <-------GAMYB      <---------ANAC58     --------->ZAT6                      <---------DEAR3(1)         <------NtERF2         <---------ANAC58----------->GT1                         --------->RAP2.6(3)        ------>NtERF2         <---------LBD16 <------NtERF2                  --------->AtLEC2       <---------ETT(2)   <-----------RAV1(1)------>NtERF2                 <---------ANAC58       --------->ETT(2)   --------->ALFIN1<---------ATERF1(1)              <---------ANAC58     <-----------HVH21  <---------ANAC46  <---------RAP2.3(1)         <---------At4g35610          <-    <-----------RAV1(1) <---------ANAC58  ------>NtERF2  ------->TEIL --------->At4g35610------>NtERF2 -------WRKY18(1)       <---------ANAC58 <---------DEAR3(1)  --------->At4g35610      --------->MYB52(1) ------->HVH21      ---------->DOF2      --------->ANAC46<-----------ARR10 <---------ANAC46 <--------   tgaccattgtcgcccgttgagagaaagcgtgttgcggacatcgacggcgtcgtaacacgaatctgcttcgccatctgccttgcaaaaacgacggctttgg  17902100                                                                                                <----                                                                                               <-----                                                                                      --------->ANAC55(2)                     <---------At4g35610                                              --------->ANAC58                     ------>NtERF2                    *TSS                            <---------ANAC55(2)               --------->At4g35610               --------->ARR11(3)                   --------->ANAC46               <---------At4g35610               <---------ARR11(3)                   --------->ANAC58            <---------MYB52(1)        <---------TOE1(3) <---------ANAC46              <---------TGA1a            --------->DOF5.7(2) --------->DAG2   <---------GLK1(2)                    --------->O2      <------NtERF2  --------->At4g35610         --------->ARR14(2)                   =============== -----ZmHOX2a(1) <-----------RAV1(1)  <---------TOE2(3)<---------LBD16                --------->TGA1a --DOF2    --------->TOE2(3)   ---------->DOF2   <---------ARR14(2)                   <---------O2   aggaaggcaccatcgttatctgccgctgattcgaaaagttagggttttgcagattttgacggagagagaagaaggggagggtttagtcacgcgagaagga  17902200                                                                 --------->REM1(2)                                                                --------->ALFIN1                                                               --------->LBD16                                                              <---------ANAC58                                                              <---------ANAC46                                                              <---------ANAC58                                                      <---------ALFIN1                                                 --------->ARR11(3)                                                 <---------ARR11(3)                                                 --------->ARR14(2)                         <-----------RAV1(2)     <---------ARR14(2)                        <---------ZAT14         --------->HSFB2a(1)           ------->GAMYB--------->ZAT14         <---------HSFB2a(1)     --------->CCA1(2)  <---------REM1(2)       --------->HSFC1(2) --------CBF        --------->ZAT6              <---------HSFC1(2) *TSS -ZmHOX2a(1)      <-----------GT1         ---------->DOF2   ------>ZmHOX2a(1)     <----------DOF2 ==================MYC_MYB            ---------->DOF2------>ZmHOX2a(1)    <---------GLK1(2)       <--   ttgagggatataacagtcatttactctacagggggtataagaaagaaagaaggtcctcactcctccgtgtggataagcttctcactttcagttcaattgg  17902300                                                                                               <-----       --------->DAG2                                                                          ------     --------->ARR14(2)                                                                        <-----     <---------ARR14(2)                                                             --------->ALFIN1     ---------->DOF2                                                              <---------ANAC46    <------NtERF2                              ---------->DOF2         --------->ANAC58        <-----   --------->LBD16             ------>ZmHOX2a(1)                       --------->ANAC58<---------REM1(1)  --------->RAP2.6(2) --------->At5g28300<---------ANAC58       --------------->AGL15<-------GAMYB <---------LBD16     ----------->GT1     <---------ANAC46 --------->YAB1          <---------ANAC58 -------GLK1(1) ------>ZmHOX2a(1)        <---------ANAC58<---------ATHB12         <---------ANAC58   atagccggaaaggctctcctccaaggtaaattcctctctacttccttgttaaagctcgaatcatctctaagttaagcaaaattggtgtgttgtagtggcg  17902400                                                                             <---------ARR11(3)                        --------->At4g35610                                  --------->ARR11(3)         ----------->HVH21                                            <---------ETT(2)       --------->At4g35610                                          --------->ARR14(2)       <---------At4g35610      --------->ALFIN1                --------->LBD16 ----ANAC58          --------->At4g35610         <---------TOE2(3)  <---------ARR14(2) ----->GT1          --------->ANAC46       <----------ID1     ------>ZmHOX2a(2) ----ANAC58    --------->ARR14(2)  --------->ARR14(2)       <---------ARR14(2) ----ANAC46    <---------ARR14(2)  <---------ARR14(2)       --------->ARR14(2)   tttatatggaggtgacaaatacgagcagcatcatgtggttcttcagggacaaaggtttcgatgatccgagtatcgacaagatgttgagaaaatgcaaaca  17902500                         <---------At4g35610                         --------->At4g35610                       --------->bZIP60(1)                  --------->ALFIN1                  <---------bZIP60(2)                  <---------O2                            <------MYB46(1)           ---------->DOF2               --------->MYB52(1)     --------->DAG2    <---------bZIP60(1)----------->RAV1(2)   ---------->DOF2--------->O2   --------->TOE1(2)        <------MYB83                            ---   gttggaaaaggctcaaagcgatgtggcatcagaaaactgggactacctgagtaacattgttggtatccaagagagaaaactcccttacatcgtctctcga  17902600                  --------->ANAC46                  --------->ANAC58                                                      <---------ANAC58                  --------->ANAC58                                                      <---------ANAC58                <-----------GT1                                                <---------HSFB2a(2)              <----------DOF2                                                  --------->HSFB2a(2)          ------>ZmHOX2a(1)                                                   <---------LBD16------>NtERF2      <---------ARR11(3)                                                     ------>ZmHOX2a(1)      <---------ARR14(2)                                                     <---------LBD16---------      --------->ARR14(2)                                  --------->ZAT14 <---------HSFB2a(1)--------      --------->ARR11(3)                    <---------MYB46(3)           <---------ARR14(2) --------- --->NtERF2   <---------DAG2               <---------AtMYB61             --------->ARR14(2) ---------   tgccccaaaatcctgactttacgcctcgatgagagactcatcccgatggtcgagtgcctctccagtcttggaaggaatcctcgggaagttgcttccgcca  17902700  Previous    Next  AGI:  At4g38150.1    Description:  pentatricopeptide (PPR) repeat-containing protein. similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT5G61990.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN78573.1); contains InterPro domain Pentatricopeptide repeat (InterPro:IPR002885) Range:  from: 17900603    to: 17902154    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At4g38160.1    Description:  PDE191 (PIGMENT DEFECTIVE 191). similar to EMB2219 (EMBRYO DEFECTIVE 2219) [Arabidopsis thaliana] (TAIR:AT2G21710.1); similar to mitochondrial transcription termination factor family protein / mTERF family protein [Arabidopsis thaliana] (TAIR:AT4G02990.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO47559.1); contains InterPro domain Mitochodrial transcription termination factor-related (InterPro:IPR003690) Range:  from: 17902267    to: 17903558    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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