Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                            <------NtERF2                       --------->ATERF1(1)                      ------>NtERF2                                                <---------AHL20(2)                      <---------ATERF1(1)                           <------ZmHOX2a(2)   <---------AHL20(2)                     --------->ANAC46                              <---------ARR14(2)   --------->AHL20(2)                     --------->ANAC58                              --------->ARR14(2) <---------YAB1                  --------->LBD16                             --------->ANAC46     <---------YAB1                 <---------HSFB2a(2)                          --------->ANAC58  --------->AHL20(1)                <---------LBD16     <---------RAP2.6(3)       --------->ANAC58  --------->AHL20(2)              <---------ARR14(2)   --------->DEAR3(1)        --------->SPL7     <---------AHL20(1)              ------------------>SPL14    --------->ARR14(2) ------->TEIL       <---------AHL20(2)         <-----------HVH21<---------At4g35610  <---------MYB52(1)--------->DEAR3(1)--------->AHL20(2)        --------->AtMYB61------>NtERF2    <---------ARR14(2)<---------ALFIN1   --------->AHL20(2)     --------->ANAC46--------->ANAC58<------NtERF2        --------->ANAC46     <---------AHL20(2)  --------->ZAT14--------->HSFB2a(2)------>NtERF2         --------->ANAC58     --------->YAB1  <---------REM1(2) --------->SPL7 <---------ATERF1(2)    --------->ANAC58  <---------ICU4 <-----------HVH21<---------SPL7   --------->ATERF1(2) --------->ZAT14     --------->ICU4      ------ ---->ZmHOX2a(1)<-------TEIL       --------->ANAC46    <---------REM1(2)  --------->AHL20(2)  <------ -MYB.PH3(2)  --------->ARR14(2)  <---------RAP2.6(2)  <---------ZAT14   --------->YAB1--------->AHL20(2)   cctcttcacaccatcaggtccggacgccagcgaattgccgccagtatccattacctctgcacgcacgccgatccataaaaattatattattaaaaaatga  17899100                     --------->At4g35610                     <---------At4g35610                     --------->ZAT2                <------NtERF2               --------->LBD16                                                                      -              <------NtERF2                                                                    <-----             --------->LBD16                                           --------->ANAC58     ---------             --------->At4g35610                                       --------->ANAC58     ---------             ------>NtERF2                                             <---------ANAC55(2)  ---------             <---------LBD16                          ----------->RAV1(1)                   <--------            --------->DEAR3(1)               --------->YAB1 --------->AHL20(2)            <---------ZAT14 --->YAB1 --------->ZAT2                   <---------WOX13(1)          ----------->GT1    --------->ZAT18 ---YAB1  <---------ZAT2                  <---------AtLEC2  <---------AHL20(2)           <---------ZAT6   taactaaaccctagccgcggagtagctgagccatggacgcgtttgaatgacaacaacaacatttttttaagttacgaaaaaatcaaatctagtgtgcaga  17899200                     <---------CCA1(1)                     <---------RVE1(1)               <------NtERF2                                  <     <------ZmHOX2a(1)   <---------AHL20(2)         --------->LBD16                                 < -------->CCA1(2)   --------->AHL20(1)             --------->RAP2.6(2)                         <----- ----At4g35610      --------->ARR11(3)             --------->LBD16        --------->ANAC58     <----- >At4g35610         <---------ARR11(3)            <------NtERF2           --------->ANAC58    <------ >ZAT18         ---------->DOF2  <------NtERF2    <---------LBD16 --------->ANAC46        ----------- >ZAT14   <---------ANAC58     <---------DEAR3(1)------>NtERF2    --------->ANAC58       <---------WOX13(1) -ZAT14   <---------ANAC58---------->DOF2       --------->ANAC46  --------->ANAC58 --------->GLK1(2)<   agagacaggaaggcgagtgaaagatattaaaagacggcgaggctagacagacgccggaaaatggaatcacgcagacaaggaagagagtctgactgacctt  17899300                                                        --------->TOE1(2)                                                       --------->HSFC1(2)              <---------ANAC46                         <---------HSFB2a(1)        <---------WRKY12                               <---------HSFC1(2)     <------ZmHOX2a(1)                                 --------->ZAT2   <---------TOE2(2)                                   <---------ZAT2   <---------TOE1(2)                                   <---------At4g35610 --------->TOE1(2)                                     --------->At4g35610 ---------ANAC58                                  <------ZmHOX2a(1) ---------ANAC58 <-------GAMYB                    =======================HOX2a_HOX2a -----DOF2  ------->GAMYB                      <------NtERF2 ----DAG2--------->MYB52(1)                  <---------DEAR3(1)   ------>ZmHOX2a(2)       <<<<<<<<<TBF1 ---DAG2<---------WRKY38(1)                  --------->ETT(1)   --------->ARR11(3)   <----------DOF2 >HVH21<------ZmHOX2a(2) --------->YAB1    <-----------HVH21    <---------ARR11(3)  <---------ANAC58 ---------ANAC46--------->ALFIN1   <-----------HVH21  --------->GLK1(2)             <---------ANAC58-   tttcgtaggatcaacggtgtgttgtaatcacagtcgcagtcaaatggtcggaggagaagctgcgatgatctctctctctctctctggctttcttcttcct  17899400                                           --------->ARR14(2)                                           <---------ARR11(3)         --------->ALFIN1            <----------DOF2        ------>NtERF2  --------->At4g35610 --------->ARR11(3)       --------->DEAR3(1)       <----------DOF2  <----------DOF2    --------->ANAC46<---------ZAT2  <---------ANAC58   ------>ZmHOX2a(1)--------->ZAT2  <---------ANAC58      ----------->HVH21  <---------ALFIN1  <---------At4g35610    <---------ARR14(2)                        *TSS       <---- ----->ZmHOX2a(1)   --------->At4g35610    <---------GLK1(2)                   <-----------GT1  <----   tcctcctcgccgaggggaagggagctgctctctgctttgctttcagattttctttcacctctgactgaaactgtagcctacttactcttctcttccaact  17899500                                            <---------TOE2(3)                               <---------DAG2----------->GT1    <---------DAG2                            <---------ALFIN1<---------YAB1------>NtERF2     <----------DOF2     --------->PCF2     <---------TOE1(3)   <----------DOF2 ------DOF2          ---------->DOF2     <---------MYB52(1)  <---------ALFIN1 -----DAG2     <---------YAB1  <----------DOF2            --------->PCF2         --------->YAB1     <   ttttctactttcagtttataatggaaaggcccacttttaatctgttatggtttaaaatgaggcccacttttaatgtgttttaaaaataaggcctattaag  17899600                                                                     <---------At4g35610                                                          --------->ZAT18                                                          <---------ZAT14               --------->ANAC55(2)                        <---------ZAT18                  ----------           <---------MYB52(1)                     <------ZmHOX2a(1)  --------->At4g35610   <------MYB46(1)   <---------MYB52(1)                       --------->WOX13(1)      ----------->RAV1(1)    <------MYB83  <----------DOF2                ----------->GT1--------->MYB59---------->DOF2        --------->ANAC58 ---------ANAC46         <---------SPL7   <---------ATHB12--------->ZAT14             --------->ANAC58   ttgcctttagcccgtttacttaatggtcttacgcagagtaacaaatcaattaggaaacagagcactagagcagcagtaggcactaggcaaggctggtaaa  17899700                                                                         ---------->DOF2                                                                     <---------WOX13(1)                                       --------->YAB1              --------->ATHB12                                      <---------YAB1              <---------YAB1                              --------->ZAT18                 --------->ARR11(3)                              --------->ZAT14                 <---------ARR11(3)                          <---------------AtSPL8              --------->GLK1(2)                  ---------->ID1----------->GT1               <---------ARR14(3)                <----             <----------DOF2  <---------ZAT18                 --------->ARR14(3)                <---- ->GT1  <---------At4g35610   <---------ZAT14             --------->ANAC46                      <----   actaaactcgtgctgcttttgtctctgtttagtacagtatatcataaaactgagtaatccacaaaatcttgattgaaaaggagatggagacaatatgtgc  17899800                                                                                              -------                                               --------->ANAC58                         <-------TEIL                                               --------->ANAC46                        -------------- -----AtLEC2               ---------->DOF2     --------->ANAC58                        --------->CCA1(2) -----ANAC58       ----------->GT1 <---------ANAC58                                   --------->ARR11(3) -----ANAC58    <-------TEIL       <---------ANAC58 <---------ZAT2                    --------->ARR11(1)   ttggaaactaagacaaaatacatgttaaataaagaatgggtgtgttaacaaggaagctaggctacaagtatccaagtagatggagaaagatacagaaaaa  17899900                                      -------->ATHB1                                      --------->ATHB51                              --------->At4g35610                                      --------->ATHB12                              --------->ZAT14                                     <---------YAB1                                 <---------ZAT14                                  --------->ZAT18              --------->ALFIN1   ------>ZmHOX2a(2)                                --------->ZAT18             --------->ALFIN1     --------->At4g35610                                <---------ZAT18            ==============================HOX2a_HOX2a              <-------TEIL   <---------ANAC46              <------ZmHOX2a(1)    <---------ARR11(3)     --------->CCA1(2)      <------ZmHOX2a(1)           =================================HOX2a_HOX2a --->DOF2    --------->CCA1(2) --------->ALFIN1  <---------ANAC46               --------->ARR11(3) ---------->ANAC81  --------->ALFIN1<----------DOF2     <------ZmHOX2a(1)     <---------ATHB12      <   gaagaagatagagagatacaaggtggaagaggagtgtgcattattgacattttgtgtaggaggagttggagccaatacaaatgatctgcagagagggcaa  17900000  Previous    Next  AGI:  At4g38130.1    Description:  HD1 (HISTONE DEACETYLASE19); histone deacetylase. Identical to Histone deacetylase 19 (HDA19) [Arabidopsis Thaliana] (GB:O22446;GB:Q0WWG3;GB:Q9SZL3); similar to HDA6 (HISTONE DEACETYLASE 6), histone deacetylase [Arabidopsis thaliana] (TAIR:AT5G63110.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO47564.1); similar to histone deacetylase [Mesembryanthemum crystallinum] (GB:AAF82385.1); similar to unknown [Populus trichocarpa] (GB:ABK95294.1); contains InterPro domain Histone deacetylase; (InterPro:IPR003084); contains InterPro domain Histone deacetylase superfamily (InterPro:IPR000286) Range:  from: 17896286    to: 17899485    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At4g38140.1    Description:  zinc finger (C3HC4-type RING finger) family protein. Identical to Putative RING-H2 finger protein ATL4N precursor (ATL4N) [Arabidopsis Thaliana] (GB:Q9SZL4); similar to MEE16 (maternal effect embryo arrest 16), protein binding / zinc ion binding [Arabidopsis thaliana] (TAIR:AT2G18650.1); similar to hypothetical protein OsJ_008379 [Oryza sativa (japonica cultivar-group)] (GB:EAZ24896.1); similar to hypothetical protein OsI_009048 [Oryza sativa (indica cultivar-group)] (GB:EAY87815.1); similar to Os02g0790600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048356.1); contains InterPro domain Zinc finger, RING/FYVE/PHD-type (InterPro:IPR01308 Range:  from: 17899862    to: 17900299    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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