Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                       <----------ID1                                                                     --------->ZAT18                                                                  --------->DAG2                                                          --------->AHL20(2)                        -          <---------AHL20(2)                         <---------AHL20(2)                      --------          --------->AHL20(2)                         --------->AHL20(2)                     <--------     <---------AHL20(2)                  <------NtERF2   --------->AHL20(2)                 ---------     --------->AHL20(2)                 ----------->RAV1(1)      --------->DAG2            <------ZmHOX2a(1) -------->AHL20(2)              <----------DOF2----------->GT1  ---------->DOF2         <-----------RAV1(2)   aatataaaaaaataaaatcaattccgatacaattcttttaggcaccatatggtaaaaaaataaaaaaaaaggggactaaatagaaatgggccaggatttg  17876100                                        <---------DOF5.7(2)                                  ------->GAMYB                                <---------At5g28300                               --------->MYB52(1)                           --------->ARR11(3) ---------->DOF2               <-----------GT1   ------>ZmHOX2a(2)          <---------ARR11(3) --------->DAG2        ----------->GT1--------->DOF5.7(2)              --------->AHL20(2) --------->DOF2    --------->ANAC58  <----------DOF2             --------->AHL20(2)                -- ->GLK1(1)         --------->ANAC58 <---------ANAC46       ----------->RAV1(1)                   ---- -ARR14(2) --------->DAG2      <---------DOF5.7(2)    <---------MYB52(1)<---------AHL20(2)    ------- >ARR14(2)---------->DOF2 <---------AHL20(2)    <---------GLK1(1)<---------AHL20(2)    <----------DOF2   caaaaaggcccataaagttgaacggaagttaattaacggcgttaacttcgatctccgtttgcgacatttaaaatttaaaatcttttgccctttcttctcc  17876200           >>>>>>>>>ARR2                                                         --------->ATHB12           >>>>>>>>>ARR1                                                       <---------WOX13(1)         <---------YAB1                                                       <------------CBF      ------>ZmHOX2a(1)               --------->GLK1(1)                      --------->ATHB12   ------>NtERF2                      <---------GLK1(1)              <-----------GT1                < ------->MYB46(3)                    <---------GLK1(2)             <---------AHL20(2) --------->TOE2(3) ----->MYB52(1)                 ------>ZmHOX2a(1)         ========================HOX2a_HOX2a       < -->HSFB2a(2)        --------->ARR14(2)   ---------->ID1  ------>ZmHOX2a(1)<------ZmHOX2a(2)     <---   aacggctccttacgattgtctcagttcttctctcctccagatttctcgcattctctaatcctgaagaattttaacagatcgattgatttcttaatgaaat  17876300                           <-----------RAV1(2)                      --------->ANAC58                      --------->ANAC58                           <---------ANAC58                      --------->ANAC46                           <---------ANAC46            <-------TEIL --------->GLK1(2)                       <---------ANAC58           --------->GLK1(2)                           <---------At4g35610          <---------ARR14(2)            <-----------TBP--------->At4g35610            <---------YAB1          --------->ARR14(2)--------->MYB59            --------->LBD16          <---------TOE2(3) ---------TOE2(3)    <-----------------AGL1          ------>ZmHOX2a(2)     --------->WOX13(1) ---------TOE1(3)--------->ZAT14<-------TEIL   <------------CBF<---------YAB1   <---------TOE1(3) ------AHL20(2) <---------ZAT6<---------MYB52(1)<---------WOX13(1)       ------------>CBF<---------GLK1(1)   ttatggtttgaagattcagtgttcacgaatcaggtacttgatttttgtagattgatccgctgattttgagtgtttatcaattagggttttgatttctctt  17876400                                                                                              ------>ZmHOX2a(2)                                                                                             <------ZmHOX2a(2)                                                                                   <----------DOF2                                                                      <---------ANAC58      <--------                                  <---------TOE2(3)                   <---------ANAC58      ---------                    <---------AHL20(2)                        ---------->ID1    <-----------GT1<-----                   --------->AHL20(2)                   --------->ARR11(3) <----------DOF2  <--------             <---------AHL20(2)   --------->MYB59       <---------ARR11(3) <---------DAG2   ---------            --------->AHL20(2)    <---------TOE1(3)     <---------GLK1(2) <---------ANAC58  ---------        <---------TOE2(3)    <----------DOF2          ----------->ARR10   <---------ANAC58  <--------   gtgcaggtttgagatttaatataaaatcgttctttttaggttctaagaattttgaaaagattttgtcttatttcttgctttattactttctctagatctg  17876500         --------->ATHB12        <---------YAB1      <---------ANAC58      <---------ANAC58                                                         <---------TOE2(3) -ARR11(3)                                                                 --------->HSFC1(2) >ARR11(3)                                                   --------->At4g35610 <------ZmHOX2a(1) ------RAV1(1)                                               <---------ZAT2<---------HSFC1(2) -AGP1<---------ANAC46                                       <---------At4g35610<---------YAB1 >AGP1--------->YAB1  --------->AHL20(2)                  ---------->DOF2 --------->GLK1(2) >ARR14(2) <---------WOX13(1)               <---------ARR11(3)        --------->YAB1               -- -ARR14(2)<------------CBF                  --------->ARR11(3)  --------->At5g28300<---------WOX13(1)   ttgaagtatcgtgattgtttgaaaaaaaatggagaaggtttatgaagagcttgatgaagtgaaagctgtgaatgagaagcttaggattgactatagaaac  17876600                --------->GLK1(2)                      --------->HSFB2a(2)     --------->HSFC1(2)                                <---------HSFB2a(2)     <---------ZAT2                                  <-------TEIL     <---------HSFC1(2)---------->DOF2              --------->GLK1(2)     <---------At4g35610                            --------->CCA1(2)     --------->HSFB2a(1)     <-------TEIL          --------->ARR11(1)                              <-     <---------HSFB2a(1) --------->DAG2    --------->AHL20(2)                                    <--- ------->MYB52(1) ----------------->AGL3   <---------AHL20(2)           <---------DOF5.7(2)<---------TOE2(3)   aaaacggagcttcttgagaatctaaaaaaggttcagaacgaacaattaatagagattcgagaggcgagactggttaacgagaagcatggttttgagattg  17876700                                                                                   <---------ANAC58                                                                                   <---------ANAC58                                                                                   <---------ANAC46                                                                             <-----------HVH21                                                                          <-------GAMYB                                                                         <-----------RAV1(1)                                                                      --------->GLK1(2)                                          <---------ARR14(2)         <---------ARR14(2)   --------->GLK1(1)     ---------->DOF2  --------->ARR14(2)         <---------GLK1(2)             <- -----ZmHOX2a(1)        <---------REM1(1)<------ZmHOX2a(1)           --------->ARR14(2)       <------ ------TOE2(3)      ------>NtERF2 <---------SPL7                    <------ZmHOX2a(1)--------->ALFIN1   aggagaaatctagagaaattgccgagttgaagcgagcgaacgaggaactacaacgttgtttgagagagaaggattctgttgtcaagcgtgtgaatgatgt  17876800                --------->MYB52(1)             --------->At4g35610   --------->LBD16       --------->TOE1(3)----------->ARR10              --------->ANAC58 --------->ATHB12  <---------LBD16<---------ANAC46     --------->ANAC58                <---------ZAT6 --------->YAB1----------->HVH21 <---------LBD16----------->GT1                  ------->TEIL --------WOX13(1) <---------ANAC46<---------LBD16<------ZmHOX2a(1)          <---------AtLEC2 ---ANAC46   <---------At4g35610--------->MYB52(1)     ----------->GT1  <---------ANAC46   gaatgataagcttagagctaacggggaagataagtaccgggaatttgaagaggagaaacgaaatatgatgtctggtttggatgaagctagtgagaagaac  17876900                                                                            ---------->DOF2                                                                         --------->ANAC58                                                                         --------->ANAC58                  <---------ICU4                                      <---------ARR14(2)                --------->AHL20(1)                                 <---------ANAC46               --------->YAB1                                     --------->At4g35610          ----------->GT1                                         <---------LBD16      --------->At4g35610        <---------At4g35610                                   <---------REM1(1)        <---------ZAT2        --------->At4g35610   --------->At4g35610           --------->At4g35610        <---------At4g35610   ------>ZmHOX2a(2)          <---------ZAT2                <---------At4g35610 <------ZmHOX2a(1) <---------ARR11(3)           --------->ZAT2    ---------->DOF2   <---------At4g35610  --------->ZAT2 --------->ARR11(3)           <---------At4g35610      <----------DOF2--------->ARR14(2)          ---   attgatcttgagcagaaaaataatgtctatagagctgagattgaggggctcaaagggcttttagctgtagcggagacgaaaaggattgaagctgagaaaa  17877000  Previous    Next  AGI:  At4g38070.1    Description:  bHLH family protein. similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G11940.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN68952.1); contains InterPro domain Basic helix-loop-helix dimerisation region bHLH; (InterPro:IPR001092); contains InterPro domain Helix-loop-helix DNA-binding; (InterPro:IPR011598) Range:  from: 17876529    to: 17882563    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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