Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100    --------->AHL20(2)  <---------AHL20(2)                  --------->TOE2(3) --------->YAB1                      ----------->GT1 --->ANAC58                       --------->YAB1 --->ANAC58                      <---------YAB1 --->ANAC46                     --------->ARR11(3) --ALFIN1                 --------------------->WRI1 ->ANAC58   --------->ANAC58   <---------GLK1(1)                                            --------- ->ANAC46   --------->ANAC58  <---------ARR11(3)                     ------->TEIL          --------->LBD16 ->ANAC58  --------->TOE1(2)  --------->ARR11(3)                     --------->GLK1(2)   ------>ZmHOX2a(2)   ccataaaaatgaacaagcgagttttgcacatagatatcatcgtaaaaacccatcttcgtaacaattccatgaatctgtttcccttctctgatccctgaaa  17860900                                         --------->At4g35610          --------->TOE1(3)              --------->LBD16          --------->TOE2(3)            <---------LBD16       --------->ANAC58              <-----------HVH21       --------->ANAC46     <---------ANAC55(2)                                    <-----------HVH21     <---------ALFIN1    <---------ARR14(2)                                        <-----------TGA1   --------->ANAC46      --------->ARR14(2)                              --------->ANAC58 >LBD16--------->ANAC58 <------ZmHOX2a(1)----------->GT1                 --------->ANAC58          --   acttcccacaagccttaaaaactggaggaaacgtgaacatgtccggtgaaaacccattactcacaaatgttttgtaagcaaaaatcgtcactcttggttt  17861000                                                                                                   --                                                                                                 <---                                                                                             <-------                          --------->ALFIN1                                                   --------                        <---------ANAC58                                                     <-------                        <---------ANAC46                  --------->ARR14(2)                 <-------                        <---------ANAC58                  <---------GLK1(2)                  --------                    ---------->DOF2                       <---------ARR14(2)                 --------               ----------->GT1                    --------->ANAC46                      <-------TEIL             <---------ANAC58             --------->At4g35610                 <---------At4g35610<---          <---------CCA1(2)          ---------->DOF2 --------->MYB52(1)       --------->At4g35610---- ------->YAB1<---------ANAC58<---------ANAC46  <---------REM1(2)--------->ALFIN1     --------->At4g35610   atcacaaactgcatagcttgataaaagcgtgttgtatgagaaagagctcaacacagaacggatactgtggagaattacagagctgtaagatgcaaaatct  17861100      <-----------------AGL1      ----------------->AGL1  --------->GLK1(1)  <---------GLK1(1)  <----------TaMYB80 <---------ARR14(2) <-----------ARR10 --------->ARR14(2) ------->LBD16 ------At4g35610 --ARR14(2) ->ARR11(3) --ARR11(3)                    --------->ICU4 ----ARR10             <----------DOF2                                        --------->ARR14(2) ->GLK1(2)         --------->ANAC58                             <---------ATHB12 ->ARR14(2)---------->DOF2     <---------YAB1         <------ZmHOX2a(2)       <---------ARR14(2) ------LBD16   <-----------HVH21--------->ATHB12     <---------ARR11(3)       ------->TEIL ----->At4g35610   --------->ANAC58                  --------->ARR11(3)      <---------CCA1(2)   gcggatttgcccagaaaggtcacgactttgttgatgattaagtcatcacgaagaagatcacgagtaatcaattgagtctgtatctgtttgaaaacgcgaa  17861200          --------->At4g35610           --------->ANAC46          <---------At4g35610     <---------GLK1(1)       <---------At4g35610        --------->GLK1(1)    <-------TEIL            <---------ARR14(2)  <-------TEIL --------->ZAT2        --------->LBD16 <---------LBD16                        --------->YAB1 <---------ZAT2       --------->HSFB2a(2)------>NtERF2                     --------->WOX13(1) ------- --------->At4g35610  <---------HSFB2a(2)--------->LBD16                 ------------>CBF     ------- <---------At4g35610  <---------HSFC1(1)<---------ETT(1)          <---------ZAT6  --------->ALFIN1   gagagctgcatcggctgatcaattccagaagaactgatttctccggcaaatacatctagtcgcaaatagtgatcaaacaatcacatgggggttctatgtt  17861300                                                  <-------TEIL                                        <---------ARR14(2)                                        --------->ARR14(2)                                          -                                       ------>MYB83                                         ---------         --------->HSFB2a(2)           ------>MYB46(1)           ------------------------>ANAC81  <--     <-----------TBP                 <---------MYB59            ---------->DOF2            -------->P -->YAB1 <---------HSFB2a(2)  ---------->DOF2   --------->ARR14(2)                     <---------At4g35610 -->TOE2(3)        <---------------------WRI1   <---------ARR14(2) --------->At4g35610 --------->At4g35610   aatctgcatttgtagaacgagttcgattcacagaaagaaccaaatttgcagattcatagacggagaagaagcggaagactgaaacagagagctaacctga  17861400                                                    --------->ARR14(2)                                           <------------CBF      <---------GLK1(2)                                          --------->ATHB51       <------------CBF<---------AHL20(2)                                          -------->ATHB1         <---------ARR14(2)                              --------->ATHB12      <---------ARR14(2)          --------->AHL20(2)                       <-----------GT1    --------->ATHB12       --------->ARR14(2)                   <---------MYB52(1)    <---------YAB1<----------DOF2         ----------->TBP ---------->TGA1  <-------GAMYB<------------CBF    <---------CCA1(2)    <----------DOF2 -->RAV1(2)      ----------->GT1      ------------>ATHB5   <-----------GT1   --------->HSFB2a(2) ----ZmHOX2a(1)<---------At5g28300    <-----------------AGL3<-----------GT1  <---------HSFB2a(2)   ggatgacgaagagggtttaccgttaaaaccacttattgggcctattattgggcctatctttttaacagattgggcttttctataaaattcttagacctct  17861500                                                                     --------->ARR14(2)                                                                  <---------ANAC46                                                                  <---------ANAC58                                                                  <---------ANAC58                                                       <---------ZAT14                    ---------->DOF2                    --------->ZAT14     --------->ARR14(2)                 *TSS                      --------->MYB52(2)    <---------LBD16                --------->LBD16   --------->WOX13(1)   --------->ZAT18     <---------ARR14(2)  <-----              <---------LBD16   <---------ATHB12<---------HSFB2a(2)  <---------ARR14(2)        ------          <-----------HVH21   --------->GLK1(1) --------->HSFB2a(2)--------->LBD16           <-------   ctagactctaggcttcaccggagaaagaagagaaatcaatcggattagttgcagaagtgcaatgcattgcggatgtgtattcgcttcacaaactgtgtca  17861600                                                   <---------At4g35610                                             <-------TEIL                                          --------->ZAT2                                      -------                                   --------->HSFC1(2)                                   <-----------RAV1(2)                                ---------->DOF2    --------->At4g35610    <-------TEIL<-----------HVH21                               <---------WRKY12<-----------HVH21        --------->ARR14(2)    <------ ----bZIP60(1)               <-----------HVH21 <-----------TGA1         <---------ARR14(2)--------->At4g35610 --->bZIP60(1)         --------->TOE2(2)  <---------ZAT2                <---------GLK1(2) <---------At4g35610 ----HVH21       --------->AHL20(2)<---------HSFC1(2)      <---------At5g28300   <-----------GT1-----   tcacttctcccatttgaaattaaaacctatgcgtcaaagcttcgagcttcgtcagcccaattaccgagaacccagattcagataaacccttcagatgatc  17861700                                                    ----------->GT1                                              ------>NtERF2                                              <---------RAP2.6(3)                                             <---------ANAC58                                       --------->MYB52(2)           <-------TEIL     XXXXXXXXXXXXXXXXXXXXX>MIR777     <-----------GT1     --------->LBD16<-------GAMYB -->ARR11(3)             ------>NtERF2 <---------ANAC58                                          <--- ---ARR11(3)            <---------DEAR3(1)   <---------ANAC58                                    <--- ->ZmHOX2a(2)          <---------LBD16 <---------ANAC58         --------->YAB1    <----------DOF2<---   tctctatctacggttcagataaatctccggcgaatagagtttcgttgccgtctcatgtaaattctatcaccagtactacaaacccttttgtcaaacactg  17861800  Previous    Next  AGI:  At4g38010.1    Description:  pentatricopeptide (PPR) repeat-containing protein. similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT1G08070.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO24593.1); contains InterPro domain Pentatricopeptide repeat (InterPro:IPR002885) Range:  from: 17859576    to: 17861255    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At4g38020.1    Description:  tRNA/rRNA methyltransferase (SpoU) family protein. similar to unnamed protein product [Vitis vinifera] (GB:CAO23060.1); contains InterPro domain tRNA/rRNA methyltransferase, SpoU; (InterPro:IPR001537) Range:  from: 17861517    to: 17863054    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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