Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                        --------->LBD16                                     --------->HSFB2a(2)                                     <---------HSFB2a(2)                              <---------ARR11(3)                             <---------HSFC1(2)                                                   ---                             <---------HSFB2a(1)                                                  <--                             <------MYB46(1)                                                      <--               <---------ARR11(3)   <---------LBD16                                              ----               --------->ARR11(3) ------>ZmHOX2a(1)                                              <---           --------->YAB1    --------->HSFC1(2)                    <---------TOE2(3)         <------- ------->At4g35610           <------MYB83                       <---------AHL20(2)          <-------- --------At4g35610    <---------MYB52(1)                     --------->AHL20(1)             --------- --------RAV1(2)<---------YAB1--------->ARR11(3)         <-------TEIL                    --------->AHL20(2) --DOF2   <---------YAB1     --------->HSFB2a(1)    --------->AHL20(2)            <------ZmHOX2a(1)   caggtgtaatgtatgattatcttcgtttggaaggtccttccggagtttgataaactaaatacatatattaatgtgtaagtaataggagggattatatatt  17849200  <---------ICU4                                   <---------AHL20(1) --------->ICU4                    <---------AHL20(2) ------>AHL20(2)                   --------->AHL20(1)        <---------ANAC55(2) -------AHL20(2)                   --------->AHL20(2)        --------->ANAC55(2) -------YAB1                      --------->AHL20(2)       <-----------GT1 ----->AHL20(2)              ----------->GT1       --------->AHL20(1)                             --- ------AHL20(2)         --------->AHL20(2)         <---------AHL20(2)                            <--- --AHL20(2)            <---------AHL20(1)          --------->AHL20(2)                         <------ -AHL20(1)             --------->AHL20(1)         --------->AHL20(2)                       <---------YAB1 >AHL20(1)            --------->AHL20(2)          <---------AHL20(2) ---------->ID1   <----------DOF2   ttaattagtagtcaaaagtctaaaatatatatagaaaaaaattgtttgacaattaaatttgttacttatttggcctattttagtttttcttttgttatta  17849300          --------->ATHB12          <---------ICU4                                            --------->DAG2         <---------YAB1                                            ---------->DOF2         <---------ATHB12                                <---------AHL20(2) -------->GT1                 <---------ARR11(3)     <---------AHL20(2)                           --- ------TOE2(3)        <-------TEIL      <----------DOF2  --------->AHL20(2)         <---------WOX13(1) ---YAB1 --------->ICU4       --------->ARR11(3)     --------->AHL20(2) --------->ZAT18  ---------->DOF2   atgtaaaactaatcattcgataagttcatcaagttcttcatactttagagtatttttaattaaaaacaaaaaagtggccaaaactgatttataaagcata  17849400                                   <---------ARR11(3)                             <---------AtLEC2                               <<<<<<<<<MYB98                      --------->YAB1<---------AHL20(2)              <---------YAB1               <---                   --------->YAB1  --------->ARR11(3)        --------->ANAC55(2)  --------->AHL20(1)                   <---------ICU4  <---------AHL20(1)        --------->ANAC46    XXXXXXXXXXXXXXXXXXXX           ----------->GT1  <-------TEIL                   <---------YAB1 <---------YAB1<---------TOE2(3)          <---------------AtSPL8   --------->AHL20(1)   <---------YAB1   <---------TOE2(3)  --------- -------->GT1     --------->ICU4 <---------ARR11(3)  ------->TEIL  <---------AHL20(1)   ----------->GT1   tagttatatcaaatagtacaataatcacgatgcatgatatatttgttagtatatgaacattataagtaatatgtttatgttaaatatgttaagaaaaaat  17849500                                                                       <------NtERF2                                                                     <---------WRKY12                                                                    --------->TGA2(2)                                                                  --------->ANAC58                                                                  --------->bZIP60(2)                                                                  --------->O2                                                                  ===================================                                                                  --------->ANAC58                                                                  --------->TGA1a                                                             --------->ANAC58                       <------MYB83  ---------->DOF2         --------->ANAC46                       <------MYB46(1)                       --------->ANAC58                     <---------WOX13(1)          <---------ARR11(3)<-----------HVH21 ----TEIL          --------->ATHB12  =======================================bZIP_DOF >MIR830          <---------YAB1   <---------MYB59<---------RVE1(1)--------->TOE2(3) >AHL20(2) <---------WRKY12<---------YAB1        --------->ARR11(3)<-----------TGA1                <-   acatatatgtaagtcaacttctgattggtatgagagacctaaagtcaaaacgatatttctcaaacgaaacgtcagcgtttagccccatttatgttctcac  17849600                 --------->DAG2     <------------CBF           ---------->DOF2   <---------ZAT18        <---------AHL20(2) <---------STY1(2)                                       ---------->DOF2        ----------->TBP    --------->STY1(2)                               <---------LBD16      ----------->TBP      --------->ZAT2                    --------->CCA1(2)<------ZmHOX2a(1)<----- =========bZIP_DOF         <---------ZAT2 *TSS   --------->MYB52(1)        <-----------RAV1(2)<------ ---------DOF2 ---------->DOF2   <----------DOF2---------->DOF2       <---------GLK1(2) --------->At4g35610   tcttttctatataaaaagaaaggtactctagctcgcttaattgttcgaaacaaagggagtgagagatggagagattatcaggagagaaagagcagagcgt  17849700                                                                                                  ---                                                                                             <-------                                                                      --------->WRKY38(1)    --------                ------>NtERF2                            <---------HSFC1(1)                <------MYB46(1)                <------NtERF2                            --------->HSFC1(1)                <------MYB83    <-------GAMYB                             <----------DOF2         ----------->HVH21   <---------AtMYB61  <---------ANAC58             --------->ANAC58          --------->HSFB2a(2)     <---------YAB1   <--  <---------ANAC58             --------->ANAC46     <----------DOF2  --------->At5g28300=============  <---------ANAC46          ------>ZmHOX2a(1) <---------MYB52(1) <---------DOF5.7(2)    <------ZmHOX2a(1) ----ZAT14      --------->LBD16--------->ANAC58   ---------->ID1 --------->MYB52(1)   <---------TOE2(3) ---ANAC46    <---------DEAR3(1)    <---------CCA1(2)    <---------HSFB2a(2)     --------->ICU4 <----   agaggcgtttggatgggccgcgagagactcctcaggccatctctctccctttgtcttttctagaaggtaacggtgactgagtgatgatgaggatggtgtt  17849800                                      --------->ANAC58                                      --------->ANAC58               <---------ICU4     --------->ARR11(3)              --------->ICU4     <---------ICU4              <---------YAB1     --------->YAB1            --------->YAB1    --------->YAB1   <---------WOX13(1)        <---------YAB1 ------>ANAC55(2) --------->YAB1<---------YAB1 --ZAT6    --------->ICU4    --------->ICU4 --->GT1------>ZmHOX2a(2)  <---------ICU4 -------ANAC55(2)<---------YAB1 --------->ICU4           <------ZmHOX2a(1) ==============HOX2a_HOX2a --------->YAB1           --------->ALFIN1     <------ZmHOX2a(1)   <------- -------GT1<---------YAB1 --------->ICU4      --------->ZAT18    <------ZmHOX2a(1)       ----------->GT1   acatgatggatcgatgattattatagccattatgatgatcacgatatgtgcaatgtgcaggaaaacaggagaagaggaagtgagagtgaaggtgttatat  17849900                                                                          --------->ANAC58                                                                          --------->ANAC46                                                                         --------->ZAT18                                                                         <-------TEIL                                                                         --------->SPL7                                                                       <---------SPL7                                                                       --------->ARR14(2)                                                                    --------->LBD16                                                              <---------MYB46(3)                                                           <---------MYB52(1)  <---------GLK1(2)                  =====================================HOX2a_HOX2a  ------>ZmHOX2a(1)                  ------>ZmHOX2a(2)                        <----------DOF2--------->ANAC58         --                 --------->GLK1(1)                     <---------At5g28300<---------ANAC55(2)   -----                <---------ARR11(3)                    <-----------GT1<---------TOE1(2)   <----------DOF2 --AHL20(2)     --------->ARR11(3)              ------>ZmHOX2a(1)  <---------LBD16 <----------DOF2 --   tgtggaatatgtcatagtgatctccattgtctcaagaacgaatggcattcctctatttaccctttggttcctgggtacgcaaattctttttctttcaata  17850000                                             <---------ICU4                                             --------->ATHB12                                            <---------YAB1                                           <---------ARR11(3)                                           --------->ARR11(3)                                     <---------AHL20(2)                                     --------->YAB1                                     --------->AHL20(2)                                    <---------YAB1                                  <---------ICU4                                  --------->YAB1                                 <---------AHL20(2)                                 --------->AHL20(2)        --------->YAB1           <---------ATHB51     <----------DOF2             --------->ICU4      <---------ANAC46 ------->TOE1(3)                --------->AHL20(2)  ---------->ID1 ---->YAB1 --------->AHL20(2)   <---------AHL20(1)<-----------RAV1(1)                 <-----------GT1 ------->TOE2(3)     <---------MYB52(1)   --------->YAB1                       --------->ICU4  <-----   acattaactttcataaattttcagttatgttcaaaataattatatgatcattgtgtcgcttacattatagtactcccagtaatttttgtttctatttgat  17850100  Previous    Next  AGI:  At4g37950.1    Description:  lyase. similar to lyase [Arabidopsis thaliana] (TAIR:AT2G22620.1); similar to lyase [Arabidopsis thaliana] (TAIR:AT4G38030.1); similar to lyase [Arabidopsis thaliana] (TAIR:AT1G09910.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO15187.1); similar to putative MYST1 [Oryza sativa (japonica cultivar-group)] (GB:BAD10227.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO61576.1); contains InterPro domain Carbohydrate-binding-like fold; (InterPro:IPR013784); contains InterPro domain Galactose-binding like (InterPro:IPR008979); contains InterPro domain Rhamnogalacturonate lyase (InterPro:IPR010325) Range:  from: 17844424    to: 17849268    Orientation: Forward Links:  TAIR  MIPS    AGI:  At4g37970.1    Description:  mannitol dehydrogenase, putative. similar to ELI3-2 (ELICITOR-ACTIVATED GENE 3) [Arabidopsis thaliana] (TAIR:AT4G37990.1); similar to sinapyl alcohol dehydrogenase-like protein [Populus tremula x Populus tremuloides] (GB:AAW45741.1); contains InterPro domain Alcohol dehydrogenase GroES-like (InterPro:IPR013154); contains InterPro domain NAD(P)-binding; (InterPro:IPR016040); contains InterPro domain GroES-like (InterPro:IPR011032); contains InterPro domain Alcohol dehydrogenase, zinc-containing, conserved site; (InterPro:IPR002328); contains InterPro domain Alcohol dehydrogenase, zinc-binding (InterPro:IPR013149); contains InterPro domain Alco Range:  from: 17849642    to: 17852240    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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