Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                   ----                                --------->AHL20(2)                                               <---                     --------->TOE2(2)                                                          -----               --------->YAB1   <---------AHL20(2)                     --------->ICU4          <-----               --------->AHL20(2)                                      <---------YAB1       --------- ----------RAV1(1)   --------->TOE1(2)                            ----------->GT1        --------->AHL20(2) -->HVH21 <---------YAB1      <----------DOF2                   ---------->DOF2          <---------YAB1   tatgtggttcttatcaataaaaaccaaggagtctttaattcaaaacacacataaactctattagtcaaaagttattatggagttatcccttataaatatg  17844000             --------->ANAC46             --------->ANAC58             --------->ANAC58             <---------ANAC55(2)             --------->ANAC55(2)  <---------AHL20(2)                  ----------->GT1 --------->AHL20(2)                  --------->DAG2 ----->ARR11(3)              --------->ALFIN1 ------ARR11(3) <---------GLK1(2)   ---------->DOF2    <---------TOE2(3) ---->YAB1   --------->ANAC55(1)  <------ZmHOX2a(1)   ---------->DOF2 ----YAB1   <---------LBD16 <-------MYC3             <---------AHL20(2)                       ------- >ICU4 <---------AHL20(2)   ------->MYC3    --------->CCA1(2)          ---------->DOF2     --------->GLK1(2)   atattatatataaacacggaatttcttacatgtgtaggaaaagtagataagagatttaaagtaacttgattttaaaagaccctatattttcagaatcagg  17844100                                              ---------->DOF2                                           --------->YAB1                                           <---------ICU4                                          <---------ATHB12                                       <---------AHL20(2)                                          --                                       --------->AHL20(2)                                       <----                                      --------->AHL20(2)                                        -----                                    --------->YAB1                                             ------                ----------->GT1   --------->AHL20(2)                       ----------->GT1    <------                <---------ZAT6   --------->YAB1                    ---------->DOF2            <------ -->MYB59     ----------->GT1   --------->AHL20(2)         <---------HSFC1(2)        ----------->GT1   tcgtcttaatgtcaaatagtgtaatttgacccaaataaaaataaatcatgaagcacattgaagtttcgaaaaagatgatgtaaaatttggaaaattaaga  17844200                                                                                                  <--                                                                                                 <---                                                                                   <---------------AGL15     ------->TEIL            <---------ARR11(3)           <---------ALFIN1       --------->AHL20(2) ------->GLK1(2)             --------->GLK1(2)         --------->ANAC46     ----------->GT1      ---- -----ARR11(3)              --------->RVE1(1)       -------->P           ---------->DOF2         <--- ---->ARR11(3)            --------->AHL20(2)       <-----------GT1      <---------AHL20(2)       ---- --->YAB1          --------->ANAC46            <-----------GT1         --------->AHL20(2)  <------ZmHOX2a(1) ---TOE2(3)      --------->ANAC46         <---------AHL20(2)   <-----------GT1   --------->YAB1 ----- ---YAB1       <-----------GT1     ------->TEIL<---------AHL20(2)      <---------AHL20(2)<---------TOE2(3)   taatctgaacctagtttatacacatcaaaaaaatctgaacctagtttattaacttaccccccatttcacaaaattaaaaggaataatatttgaggaaaat  17844300          --------->YAB1         <---------YAB1       --------->YAB1       <-----------GT1  --------->AHL20(1)  <---------AHL20(1)                                                          --------->ICU4  --------->AHL20(2)                                                   <----------DOF2  <---------AHL20(2)      <---------YAB1                               --------------------->WRI1 <---------AHL20(2)   <---------AHL20(2)                            ------>NtERF2 --------->AHL20(2) --------->AHL20(2)                              --------->LBD16 -------AHL20(2)    <---------AHL20(2)                             --------->DEAR3(1)             <-- ------AHL20(1)   <---------AHL20(2)          --------->AHL20(2) ------>ZmHOX2a(1)          --------- ----->AHL20(1)   --------->AHL20(2)          <---------AHL20(2) ========================HOX2a_HOX2a ------AHL20(2) <---------AHL20(2)            <---------YAB1     <---------ATERF1(1)      ---------->DOF2 ----->AHL20(2) --------->AHL20(2)          --------->YAB1      <---------ALFIN1  ------>ZmHOX2a(2) - ---->AHL20(2)--------->AHL20(2)   XXXXXXXXXXXXXXXXXXXX>MIR2112-5P <---------ALFIN1   --------->YAB1<   taattttatttatcatatatatatatatatgataccacaaatacaaatataaatgaatacatacctcctccgcctttgtactgatcgagcataaaaggtt  17844400                                                            <-----------GT1                                                         --------->CCA1(2)                                            --------->AHL20(2)           <---------ZAT14        <----                                            <---------AHL20(1)           --------->ZAT14     --------  ------>ZmHOX2a(2)                         --------->AHL20(1)        <---------ANAC46       <------- -------YAB1                                <---------ARR11(3)      <---------ZAT14  ------>ZmHOX2a(1) >DAG2   <<<<<<<<<TBF1                 <-------TEIL     <---------ARR11(3)      <---------At4g35610 -------->ARR11(3)                    --------->CCA1(2) --------->ARR11(3)      --------->GLK1(1) ---------ARR11(3)      *TSS   ----------->GT1  <-----------GT1<----------DOF2  <---------GLK1(1)   atgatctcttcttcttcatttttgttaataagatggtaagatacaatattttacgagagatataactttcttcagtggagagagctcctcttatccgagg  17844500                                                                                  <---------YAB1                                                        <---------DOF5.7(2)   <---------AHL20(2)    --------->ZAT2                                     <---------WRKY12     --------->AHL20(2)    --------->At4g35610                   ---------->DOF2               --------->AHL20(2)    <---------At4g35610                   <---------DOF5.7(2)       --------->AHL20(2) <---------AHL20(2) ---------->DOF2      ---------->DOF2   <---------MYB52(1)--------->ANAC46--------->AHL20(2) --ZmHOX2a(1)        --------->MYB46(3) --------->DOF5.7(2)--------->TOE2(3)<---------AHL20(2) ->LBD16           ----------->RAV1(1)----------->GT1  <---------WRKY45 <---------AHL20(2)       ---- --LBD16 ---------->DOF2      ----------->GT1          <---------WRKY38(1)<---------AHL20(2)     <---   aatcaaagctgcaaaggaatccaacaaaggagaagataaaccgttaaagtgtctaagtcaacgtaagtgtttatatatatatatatgattttttttgtag  17844600                                                    --------->CCA1(2)                                                    <------ZmHOX2a(2)                                                   <---------AGP1                                                   --------->ARR11(3)                                                   --------->AGP1                                                   <---------ARR14(2)                                                   <---------ARR11(3)                                                   --------->ARR14(2)                                               ------>ZmHOX2a(2)                                              <------ZmHOX2a(2)                   ===================================HOX2a_HOX2a                   ==================================HOX2a_HOX2a                   <------ZmHOX2a(1)         --------->AGP1            ------->MYC2                     <---------AGP1            <-------MYC3                     <---------ARR11(3)                                   ---          ------->TEIL                       --------->ARR11(3)      <---------At4g35610          <--   <---------AHL20(1)                 <---------ANAC46       <<<<<<<<<SUP                         ---   --------->ARR11(3)                <---------TOE2(3)  --------->ANAC58                          ---   --------->AHL20(1)----------->GT1 <---------TOE1(3)  --------->ANAC58                         <--- ------->GT1------->MYC3            <---------DOF5.7(2) --------->ANAC46                         ---- ------ZAT6 <-------MYC2          --------->DOF5.7(2)------>ZmHOX2a(2)                         ------   tgttatatattgaacgtgtaaggaggttatatagacattaacgtatagatctagatctacgacactgtcttcgctgattacagtttatacaagaggtttg  17844700                                                                                                   <-                                                                                                   --                                                                                                   --                                                                                                  <--                                                                                                  <--                                                                                                 <---                                                                                              -------                                                                                              <------                                                                     <---------ARR14(2)       -------                                                                     --------->ARR14(2)       ------- ------>ANAC46                                            <---------TOE2(2)                   <------ -------ANAC55(2)                                         <---------TOE1(2)                   <------ ------>ANAC55(2)                                        <------NtERF2                    <---------ANAC55(2) ------>bZIP60(1)                                    <-----------HVH21                    --------->ANAC46 ------TOE2(3)                                      <-----------RAV1(1)                  <---------LBD16 ------>ID1                                 <---------AHL20(2)   <---------------------WRI1  -------- ----->HVH21                         --------->GLK1(2) --------->ETT(1)                <---------ARR14(2)   acgtaatcggtctatagaccatgtctaaactaatttcagtttctgttttattttttgtcggaggtttagcgaattggccaaggagatggaatacggagct  17844800   <XXXXXXXXXXXXXXXXXXXXMIR166A-G --------HSFB2a(2) ------->HSFB2a(2) ------->LBD16 -------LBD16      ------>NtERF2 -------ANAC46     --------->LBD16 ------LBD16     <---------LBD16                                                         --------->ZAT18 -->GLK1(1)      <------NtERF2                                                   --------->ANAC58 ---GLK1(1)      --------->ATERF1(1)       >>>>>>>ZML2                           --------->ANAC46 -->ZAT2       <---------DEAR3(1)     <---------ANAC58                           --------->ANAC58 -->At4g35610  --------->ETT(2)       <---------ANAC58                         --------->MYB52(1) ---At4g35610<-----------HVH21    <----------DOF2                           <---------ICU4 ---ZAT2    <------MYB46(1)       <---------DAG2                            --------->YAB1 --->ARR10  <------MYB83       <---------ALFIN1                    --------->KAN4(2)     <---------ZAT18   ccgggaatgaaggctggtcgccgggttctaactccacttttcgttctagttttccttcttcaaggtgttcattctcaaacatcacggtatgtgctcttaa  17844900  Previous    Next  AGI:  At4g37950.1    Description:  lyase. similar to lyase [Arabidopsis thaliana] (TAIR:AT2G22620.1); similar to lyase [Arabidopsis thaliana] (TAIR:AT4G38030.1); similar to lyase [Arabidopsis thaliana] (TAIR:AT1G09910.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO15187.1); similar to putative MYST1 [Oryza sativa (japonica cultivar-group)] (GB:BAD10227.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO61576.1); contains InterPro domain Carbohydrate-binding-like fold; (InterPro:IPR013784); contains InterPro domain Galactose-binding like (InterPro:IPR008979); contains InterPro domain Rhamnogalacturonate lyase (InterPro:IPR010325) Range:  from: 17844424    to: 17849268    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version