Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                      -                                                                                                    <                                                                                                    -                              <---------ANAC58                                                      -                              <---------ANAC58                                                      <                   --------->YAB1                                        --------->DAG2             <                  <---------ATHB12       --------->ANAC58               ---------->DOF2             -                  <<<<<<<<<ARR2      ------->GAMYB                      --------->DAG2          -----                --------->WOX13(1)   --------->AtMYB61                 ---------->DOF2          -----               --------->MYB46(3)   --------->MYB46(3)             <-------TEIL<----------DOF2  -----       --------->ARR11(3)--------->ATHB12--------->ANAC58         --------->CCA1(2)        ----------   acagacatagaacttcaacaatcaaaaccattgcttcaaccacaaggaaaactataaacaaacaagagatacaaaaaggcgcttaaactcacagtgacac  17834500   <----------DOF2  ------>ZmHOX2a(2) <------ZmHOX2a(2) -------->ARR14(3) ---------ARR14(3) -------->ARR11(3)                                                  ------------------------>ANAC81 -------->ARR14(2)                                         <---------GLK1(1) ---------ARR11(3)                                         --------->GLK1(1) ---------ARR14(2)                                   --------->MYB52(1) -------->AGP1                                     --------->MYB46(3) ---->ANAC58                    ---------->DOF2    <---------MYB52(2)                           <---- ---->ANAC46          <----------DOF2          ------->GAMYB------------------------>ANAC81     ----- ---->ANAC58        --------->At4g35610       --------->ANAC58 ----------->GT1      ----------->GT1 ->HVH21      <xxxxxxxxxxxxxxxxsmallRNA(se3)  --------->ANAC58--------->YAB1   --------->AHL20(2)   gagatctttccttctcatcaacagcttcactgggcaaagaagactgcaacggaacaaacagaaatcagaaaaaaaaaaaaaaaaaatcgaaaatttccaa  17834600                                           <-----------GT1                                         <-------GAMYB                                        --------->MYB111(1)                <------ZmHOX2a(1)                                        <---------MYB46(3)       ------>ZmHOX2a(2)       <---------AHL20(2)              <--------P                =================HOX2a_HOX2a      --------->AHL20(2)              <-------GAMYB            <---------ARR14(2)   --------->YAB1               <----------DOF2             --------->ALFIN1 -----ARR14(2)      ---------->DOF2 <---------TOE2(3)     <---------bZIP60(2) ---->ARR14(2)    --------->CCA1(2) <---------TOE1(3)     <---------ANAC46<----------ID1           >>   tccgattataaaattcggagataaaaggaagaaactttagggttgttaccatgtaacatgaagtggatcgaataagaggacgaatgggtttgtcaattga  17834700                                                                                  <---------ARR14(2)  ---------->DOF2                   ---------->ID1                                --------->ARR14(2) >>>>>>>TBF1             <---------ATERF1(1)                   ----------->GT1    <---------GLK1(2)   agaagaaagccttcgaagagccatggccatcgccatttttcgctaaacctctctctatctctggtttgtgaaaccctagaaacagatttgaaacatgaac  17834800                                                                                              <------                                                                     <---------At4g35610  <---------At4g35610                                                                <----------DOF2     <-------GAMYB                                                           <---------At4g35610     --------->MYB55(2)                                                         <---------ANAC46          <---------MYB46(3)                                                       <---------ZAT18            <---------AtMYB61                              <---------ANAC46      <-----------RAV1(1)        <---------AtMYB61                 --------->YAB1    --------->ARR11(3) <---------RAP2.6(2)   <----------DOF2   -------   gagagagaagagagaacaaaaataacaaaattgggtttatcttgtttgagagaattgtggcctctgcttttggctgagcttttggtggttgcagcaaatt  17834900                                                                                                 ----                                                                                                 ----                                                                                               ------                                                                                               ------                                                                                               <-----                                                                                               <-----                                                                                               <-----                                                                                               ------                     *TSS           <---------YAB1                                          ---------                    <---------AHL20(2)                                          --------->At4g35610 <        <-----------GT1 <---------AHL20(2)        <---------YAB1      <---------MYB52(1)    ---------        ---------->ID1  --------->AHL20(2)     <---------AHL20(2)  ---------->ID1        <---------ETT(2)       <-----------GT1<-----------TBP      <---------AHL20(2)  <----------DOF2  <---------At4g35610-- ---ARR14(2)       <---------AHL20(2)     <---------YAB1---------->ID1--------->DOF5.7(2)--------->ETT(2) -->ARR14(2)  <----------DOF2     <---------At4g35610 <-----------RAV1(1)      <---------TOE1(2) ----   ttcgaattttttccctctttttttatttatattttcttctgatttttattttatatttgttgtttctttgtcgttatctctcaggtccctgtctacacca  17835000 ---->P<------------CBF                                                                     <-------- -->MYB46(1)                                                                           --------->YAB1 --->AtMYB61                                                                           --------->TOE2(3) --->DEAR3(1)                                                                       <---------DOF5.7(2) ----MYB111(2)                                                                     <---------WRKY12 ----MYB46(2)         ----------->HVH21                                            <---------WRKY45 ----MYB111(1)        ----------->TGA1                                             <---------WRKY38(1) --->MYB46(3)       <------MYB46(1)                                               --------->WRKY18(1) >REM1(1)     --------->ICU4                              <----------DOF2     <---------ZAT14 ----------DOF2--------->ATHB12             <----------DOF2 --------->ATHB12  --------->ZAT14 >ANAC46      <---------YAB1           <-----------GT1   --------->TOE2(3)    --------->ZAT18 ------->TOE2(3)    <------MYB83--------->ATHB12        <-----------------AGL3<---------ZAT18 -->MYB83  <---------YAB1      <---------YAB1         <---------GLK1(2) <-----------HVH21 --------->MYB52(1)   acctttgtgaattgtgatgatttggtgacgacgatgatttgtttccctttaagacagaacctttattggtttctggtcagtgcagtcaacgataaccgat  17835100                      --------->AHL20(2)                      <---------AHL20(2)        <---------ANAC46                     <---------AHL20(2)         <---------LBD16       <---------ICU4                 --------->AHL20(2)            --------->ALFIN1       --------->YAB1                 <---------AHL20(2)        --------->MYB52(2)        --------->ICU4                --------->AHL20(2)       <--------P      <---------TOE2(3)                      -----                <---------AHL20(2)       <---------MYB52(1)   <-----------GT1                  ------         --------->ANAC46       ----------------->AGL1   <---------YAB1  ----------->GT1     -------- ----MYB.PH3(1) <---------AHL20(1)      <---------MYB52(1)    --------->MYB52(1) <-----------GT1-----   tcagttatcacacatcaatttaatttatatagtttccaaaccggttagtttgggggaataagattaacagaattatggtgaatttacaaaataaaaccaa  17835200                                                                            --------->ATHB51                                                                            --------->ATHB12                                                                            -------->ATHB1                                                                           --------->ICU4                                                                           <---------AHL20(2)                               <---------TOE2(3)               --------->AHL20(1) ->MYB46(1)              <---------AHL20(2)            ----------->GT1     --------->AHL20(2) ----->RAV1(1)       ----------->GT1       <-----------GT1    <---------AHL20(2)      <---------TOE2(3) ->MYB46(3) --------->MYB52(1)<-----------GT1       <---------AtLEC2       <---------ATHB51 ->MYB83 --------->TOE2(3)   <-----------GT1       <-------TEIL<---------AHL20(1)  ------>ZmHOX2a(2)   caaaacaaaaaacttaacagaaaatgtttatttaacattttagaattaccaagtgcatggttatatatattaaacaaattattgatctaagaatattgat  17835300                                                           ----------->GT1                             <---------YAB1               <---------TOE2(3)                     -------->HAHB4                       <---------TOE1(3)                     <---------ICU4                  ------->TEIL                     <--------ATHB1                  <---------ARR11(1)                    --------->ICU4               <---------TOE2(3)               --------->YAB1                    <---------YAB1            <---------WOX13(1)               --------->AHL20(2)                    <---------ATHB51        <---------AHL20(2)                 <---------AHL20(2)                  --------->YAB1            --------->ATHB12                   <---------YAB1               <------ZmHOX2a(1)           --------->AHL20(2)                 --------->YAB1             <---------TOE2(3)             <---------AHL20(2)        <---------------AtSPL8             <---------TOE1(3)     <-----------GT1   --------->GLK1(2)        --------->TOE2(3)    <-   atttgagagagttttgaggataataattcatatgatttttctctattaattgacgaatctatggttataaacaagtacaatattaatactcaagatgagt  17835400  Previous    Next  AGI:  At4g37930.1    Description:  SHM1 (SERINE HYDROXYMETHYLTRANSFERASE 1); glycine hydroxymethyltransferase/ poly(U) binding. Identical to Serine hydroxymethyltransferase, mitochondrial precursor (SHM1) [Arabidopsis Thaliana] (GB:Q9SZJ5;GB:Q940M9); similar to SHM2 (SERINE HYDROXYMETHYLTRANSFERASE 2), glycine hydroxymethyltransferase [Arabidopsis thaliana] (TAIR:AT5G26780.2); similar to SHM2 (SERINE HYDROXYMETHYLTRANSFERASE 2), glycine hydroxymethyltransferase [Arabidopsis thaliana] (TAIR:AT5G26780.1); similar to SHM2 (SERINE HYDROXYMETHYLTRANSFERASE 2), glycine hydroxymethyltransferase [Arabidopsis thaliana] (TAIR:AT5G26780.3); similar to Serine hydroxymethyltransferase, mi Range:  from: 17831725    to: 17834921    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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