Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                     --------->DOF5.7(2)                                                --------->ANAC46                   <---------MYB52(1)                                                 --------->ANAC58                <---------YAB1                                              --------->YAB1             <---------YAB1              <---------ARR11(3)              <----------DOF2    --------->MYB52(2)                   --------->ARR11(3)            <---------At4g35610   <---------TOE1(2)          <---------ZAT6                           --------->At4g35610  <---------MYB52(1)     --------->TOE1(1)                          <---------At5g28300    <---------GLK1(2) ---------ANAC58<---------TOE2(3) ------>ZmHOX2a(2)              <-----------HVH21    --------->ANAC58 ---------ANAC58<---------TOE1(3)<---------------------WRI1 --------->ARR11(3) <---------ICU4 >TEIL<---------MYB52(1) --------->TOE2(1)          --------->YAB1 <-----------GT1  ----------->RAV1(1)   tttcgttcgtttattgttatcgttacctcgtagtgatcgacgagttcttggaaataagaatagaccttgttacagctttcatcatcccacacaaattctt  17831100                                                                                            <--------                                                                                            <--------                                                                                            ---------                                                                                            <--------                                                                                            ---------                                                                                            ---------                                                                                            <--------                                                                                            <--------                                                                                            <--------                                                                                         ----------->HVH21                                                                                         ----------->TGA1                                                                                       <---------ANAC55(2)                                                                                       <---------ANAC58                                                                                       <---------ANAC58                                                                                       <---------TGA1a                                                                                       --------->ANAC55(2)                                                                                       --------->O2                                                                                       --------->TGA1a                                                                                     --------->MYB52(1)                                                                                    ------>ZmHOX2a(1)                                                                                  ------>ZmHOX2a(2)                                                                                 <------ZmHOX2a(2)                                                                                <---------ARR11(3)                                                                                <---------ARR14(2)                                                                                --------->ARR11(3)                                                                                --------->ARR14(2)                                                                              ----------->ARR10                                                                           <---------ANAC46 <--------                                                                       --------->At4g35610  <--------              ---------->DOF2                                         --------->ANAC46 <---------O2             --------->YAB1            ----------->GT1        <------ZmHOX2a(2)--------->GLK1(1)-----     <------ZmHOX2a(2)            ----------->HVH21      <---------LBD16  --------->At4g35610 -------   <------ZmHOX2a(1)     <-----------GT1 --------->WRKY18(1)  =============================HOX2a_HOX2a   cagtaggatcaagaatcaaagtgagtttatccatttgtgactggtcaaactcacaagtctctggatcaatataagcagcgtagatcctaacgtgacgtgt  17831200 -ANAC46 -TGA1a >O2 -O2 >TGA1a >ANAC55(2) -bZIP60(2) -ANAC55(2)                                          <---------At4g35610 -ANAC58            --------->AtMYB61                --------->At4g35610              <---------At4g35610 -ANAC55(1)     --------->MYB46(3)                   <---------ZAT2                <---------At4g35610 -ANAC58    <---------MYB52(2)                    <-------TEIL <---------ALFIN1   <---------MYB46(3) ------>HVH21----------->HVH21              <---------REM1(2) <---------ZAT14 --------->ALFIN1 -->ALFIN1 --------->At4g35610  <---------ALFIN1 <-----------HVH21            <-----------RAV1(1)   gacactgcttagccactgaccaccaaaatcgcccatacccttgctcttcacgttcagctgtttctccactggtctcaatggtgttggctgcttcttcatc  17831300                                                                     <-----------HVH21                                                                  --------->GLK1(1)                                                                 <---------ARR14(2)                                                              <---------ANAC55(2)                                                              --------->ANAC55(2)                                                              <---------ANAC46  --------->ANAC58        <---------WOX13(1)                                    --------->HSFB2a(2)        <-----------RAV1(1)       <---------ANAC58                                       <---------HSFB2a(2)   <----------DOF2       <---------ANAC58                                      <---------LBD16    --------->ANAC58      --------->ATHB12            <---------ANAC58     <---------ANAC58     --------->ANAC58     <---------YAB1  <---------ANAC58           --------->ZAT14  --------->ARR14(2)<---------DAG2    <---------MYB52(1)            <---------ANAC58     <---------ANAC46     --------->ANAC58   <-------GAMYB <----------DOF2  <---------ANAC46     <---------ANAC58     <---------MYB52(2)  <-----------RAV1(1)<---------ANAC58           <---------ZAT14--------->LBD16 ------->TEIL   ttctctgttgattgctcttctttgagtgtctctgtttcttgtacttcaagagtactgtcttgttccggatttgtcaccacgaacgccttttgtgttgttc  17831400                --------->YAB1                --------->TOE2(3)               --------->ATERF1(2)               --------->MYB46(3)               <---------ATERF1(2)              -------->P                       <-----------RAV1(2)           <---------At4g35610                --------->ZAT14     <---------ARR14(2)                    <------MYB46(1)                    <-----------GT1     --------->ARR14(2)             ---------->DOF2   <---------ZAT6    <---------ATHB12  --------->ETT(1)      <------ZmHOX2a(1)  <------MYB83                 --------->MYB46(3)  ---------   ttggtcggatttgagcaaccatagaaggatgtaatagagaaagcttggtgcaggcagtgtaagagaatgctgcaaccatttttctgtctaagaaatgaaa  17831500                                    --------->HSFB2a(2)                                    <---------ANAC55(2)                                    --------->ANAC55(2)                                    <---------HSFB2a(2)                                 <---------ARR14(2)                                 --------->ARR14(2)                                <-----------HVH21                             <---------LBD16                           <---------SPL7                   --------->CCA1(2)                     ---    --------->MYB52(1)   <---------------AtSPL3 *TSS ---------->DOF2              --------->AtMYB61 -->GT1               --------->ARR11(3)     <---------GLK1(2)     <---------TOE2(3)  <---------ZAT2   aaaaaaaaacagaacaagttttgagatgttgtccggttacagaaccatattcttgtaaagagatttgatgaggttgagaaatgaccacagcttgtggatg  17831600                                                                                 ---------->DOF2                                                                              --------->At4g35610                                                                       --------->O2                                                                       <---------O2                                                         --------->ARR14(2)   <---------At4g35610                                                        <-------GAMYB  --------->TGA1a                                                        =========================MYC_MYB                                   ---------->ID1      <---------MYB46(3)   --------->ZAT18                               ==================================================bZIP_DOF                               <----------DOF2        <---------TOE2(3)<---------TGA1a  --------->GLK1(2)                           ---------->ID1    <------MYB46(1)           =====================bZIP_DOF                          <-----------GT1    <------MYB83<---------ARR14(2) <---------ZAT18   <------ ---->TEIL               <-----------GT1 <-----------RAV1(1)           =====================bZIP_DOF   agcctctcccaacttctagtttcttatttatccctttctcgttttgttggtattttgtggttactcttaagtcacttgtgagctaaagacaatcttcttt  17831700                                                                                    <---------YAB1                                                                                   <---------AHL20(1)                                                                                  <---------ICU4                                                                                 <---------YAB1                                                                                 --------->ICU4                                                                               <---------ICU4     ---      <---------At5g28300                                                    --------->ARR11(3) -----     <-----------GT1                                                         <---------ARR11(3) <----  --------->GLK1(1)                                                     <-----------GT1         <----  <---------GLK1(1)                                  <---------TOE2(3)--------->AHL20(2)---------->ID1 ----DOF2                                      <----------DOF2 ----------->GT1<------ZmHOX2a(2) <----   agggaattcactgttttgttgtatgtgttttttttgtctaagtatatttctttttgatgtatagagagaaaatttaacagatcattatttttcgcatagc  17831800                                                                                 --------->ZAT14                                                                         <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) -------->GT1                                                           ----------->HVH21 ------>GT1                                         --------->MYB52(1)----------->GT1--------->ARR11(3) -----ANAC58                                     --------->YAB1       <---------ANAC46 -----ANAC46       ------->TEIL              ---------->DOF2          <---------ANAC58 -----ANAC58<-----------GT1              --------->GLK1(1)            <---------ANAC58   gtgaaaatagagttttacatgtatcatctatacattccatgggaattcaaagcataacagaaaacacttgtggggtgaaacagtttagttcttgtacttc  17831900                                                                                    <-------GAMYB                            <---------At4g35610                                    <---------MYB46(3)                           --------->ARR14(2)                 <---------ARR14(2)   <------MYB83                           <---------ARR14(2)               ----------->ARR10      <------MYB46(1)                    <---------MYB46(3)                     <------NtERF2<---------LBD16      <------ZmHOX2a(1)              --------->ANAC58               ------>ZmHOX2a(1)--------->ARR14(2)  <---------AtMYB61              --------->ANAC58          --------->GLK1(1)<---------ANAC46   <---------ARR14(2)-------     <----------DOF2<-----------RAV1(1) <---------ARR14(2)<---------ZAT18   --------->ARR14(2)<------   atggtttctttctcaaacccaattgttgggaactgcttagcgaattcctcgacttcatggcgcagtttcgcaatctcggattggatggttgaagaggatt  17832000  Previous    Next  AGI:  At4g37925.1    Description:  NDH-M (SUBUNIT NDH-M OF NAD(P)H:PLASTOQUINONE DEHYDROGENASE COMPLEX). similar to unnamed protein product [Vitis vinifera] (GB:CAO61927.1) Range:  from: 17830556    to: 17831548    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At4g37930.1    Description:  SHM1 (SERINE HYDROXYMETHYLTRANSFERASE 1); glycine hydroxymethyltransferase/ poly(U) binding. Identical to Serine hydroxymethyltransferase, mitochondrial precursor (SHM1) [Arabidopsis Thaliana] (GB:Q9SZJ5;GB:Q940M9); similar to SHM2 (SERINE HYDROXYMETHYLTRANSFERASE 2), glycine hydroxymethyltransferase [Arabidopsis thaliana] (TAIR:AT5G26780.2); similar to SHM2 (SERINE HYDROXYMETHYLTRANSFERASE 2), glycine hydroxymethyltransferase [Arabidopsis thaliana] (TAIR:AT5G26780.1); similar to SHM2 (SERINE HYDROXYMETHYLTRANSFERASE 2), glycine hydroxymethyltransferase [Arabidopsis thaliana] (TAIR:AT5G26780.3); similar to Serine hydroxymethyltransferase, mi Range:  from: 17831725    to: 17834921    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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