Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                        --------->ALFIN1                                                                          <---------TOE2(3)              <------ZmHOX2a(1)                                       --------->ARR11(3) <---------MYB46(3)       ----------->GT1                          <------NtERF2      <---------REM1(1) --------ANAC58--------->ARR14(2)                                --------->DEAR3(1) <------MYB46(1) --------ANAC58<---------GLK1(2)                   ----------->GT1--------->LBD16   <------MYB83 >>>> ------GAMYB<---------TOE2(3)             --------->ATHB12      <---------LBD16  <------ZmHOX2a(1)  > --------------->WRI1  <----------DOF2   <---------YAB1 ---------->DOF2--------->CCA1(2)      >>>>>>>   tggttgtttcgatttaggattcttactttggtgaaacagagttttgatttgagtagagaaaagctcgccggagatttaggtgaggaaggtgtagaagaag  17814700                                                           --------->HSFC1(2)                                                      <---------HSFB2a(2)                                                      --------->LBD16                                                      --------->ANAC46                                                     <------NtERF2                                                     <---------LBD16                                                     --------->LBD16                                                 <-----------HVH21              ---------->DOF2                   <---------ANAC58                                -----   <---------ARR14(2)                           <---------ANAC58                              <------   --------->ARR14(2)                         --------->MYB52(1)                    <---------ANAC46 >>>>>TBF1 <---------TOE2(3)                  <-----------GT1            <---------ANAC58   --------- >>>>>>>>TBF1<------ZmHOX2a(1)          <---------DEAR3(1) <---------HSFC1(2)     --------->MYB52(1) >>TBF1 <----------CDC5 <------ZmHOX2a(1) <------NtERF2--------->LBD16   <---------ANAC58----------->ARR10   aagaagaaacgctgaggaaagagagaggacttctgtttctcgtcggagtaacgtccccggaagtatcgcattgaagcttgggactagcgggaagagacgg  17814800                               ----------->HVH21                           -------->P                           ------>MYB46(1)                            --------->ETT(1)                           ------>MYB83                        --------->ARR14(2)                   --------->At4g35610         <------ZmHOX2a(1)    <-----------HVH21     --------->ALFIN1    --------->AtMYB61    <------MYB46(1)  --------->GLK1(2)  <------ZmHOX2a(1)<---------At4g35610        <------MYB83     <---------ARR14(2)                <--- ---->At5g28300<---------REM1(1)            <--------P        <---------GLK1(2) --------->ARR11(3) ---DEAR3(1) --------->At4g35610    --------->ANAC58       ----------------->AGL1      <---------ANAC46 >CCA1(2)    <---------At4g35610    --------->ANAC58<-----------RAV1(2)<---------DEAR3(2)       <----   tgaaggagtggagatagctgtagcagaccaactctgacaaggaatggtaggagagcaggttacagaatcgggtcgggtctcagaccttggagtagacggg  17814900                          <---------MYB46(3)                       <---------MYB46(3)             --------->ARR14(2)             <---------ARR11(1)             --------->GLK1(2)                                             <----------DOF2             <---------ARR14(2)         --------->WOX13(1)                <-----------------AGL3            <---------GLK1(2) <---------MYB46(3)    --------->YAB1     <----------DOF2            <---------CCA1(2) <------MYB83<------ZmHOX2a(2)   <-------GAMYB--------------------->WRI1 -----P     <---------ARR14(1)<------MYB46(1)----------->GT1 <-----------RAV1(1) <---------YAB1 -------HVH21------->TEIL <-----------RAV1(1)<---------ANAC55(2)<---------MYB46(3)  ------->TEIL   ttagagaaaaacccgaatcttgaagttgttgttggtttttgtcgatcaagtgaatcatcgactctgttgttgtctttctttttatgaatcgaactccaaa  17815000                                                                              *TSS                                                                      <---------WOX13(1)                                                                    <<<<<<<<<RAP2.2                --------->YAB1        <-----------GT1           --------->TOE2(3)---------->DOF2 <---      --------->HSFB2a(2)       <----------DOF2                 <----------DOF2 <------ZmHOX2a(1)<---   acgttcttctcaaaccattcatcatcttcaacttctttacttactatttcttcgtagtgacttcaactttagattgatgagaggaaaggaaatgtttttg  17815100                                                                                           <---------ANAC58                                                                                           <---------ANAC58                                                                                         --------->ZAT18                                                                <---------ANAC58     --------->DAG2                                                                <---------ANAC58    ---------->DOF2                                                                <---------ANAC46--------->YAB1     <---------TOE2(3)         <---------ZAT6                  <------NtERF2   <---------AHL20(2) ------TOE1(3)       <---------ZAT14   ---------->DOF2       <---------ANAC46 <---------AHL20(2) ------TOE2(3)      --------->ALFIN1 >>>>>>>>>GATA-1         --------->ALFIN1 --------->AHL20(2)<----   aggttttaatgtaagacagagagtggagagatagagatagataaagaagaacaagagaaaatggtggggtttgagttttttttaataaaagtggcctact  17815200                                      --------->ATHB12                                      <---------ICU4                                     <---------YAB1                               --------->ATHB12                <---------TOE2(3)    --------->ICU4               ---------->DOF2<---------YAB1          --------->ARR11(3)              --------->YAB1  --------->ICU4          <---------GLK1(2)        <-----------GT1  ----------->GT1          --------->YAB1 ------DOF2   --------->AHL20(2) <---------WOX13(1)   <---------ARR11(3)                            -   tttgtttatttcacaattaaagttgtattgtaaagattgattattgggattatcaagatttttctgaagataaatgaaaaacaaaaaatgttctctaaaa  17815300              ---------->DOF2           <---------AHL20(2)         <---------YAB1        --------->AHL20(1)       <---------AtMYB61       --------->AHL20(2)     <----------DOF2       <---------AHL20(2)    <---------ANAC58      <---------AHL20(2)     <---------ANAC58                                      <----------DOF2      --------->AHL20(2)<---------ANAC58                                        --------->ICU4      <---------AHL20(1)<---------ANAC58              --------->TOE1(2)      <---------YAB1       <-- --------->At5g28300<---------At5g28300           <-----------GT1          --------->YAB1    -------- ---------->GT1    <-----------GT1    <---------HSFB2a(2)              <---------AHL20(2)   <--------   aactgtaaattattttaaaagttactgcttggcttttggtctagagactgaatcaccctacgagtctacaaatgtaattgtaattcttttttgcctttat  17815400              --------->ATHB12              -------->ATHB1              <---------ICU4     --------->ZAT2      <---------ANAC46     <---------ZAT2      <---------ANAC58    --------->ANAC58     <---------ANAC58                                                           <    --------->ANAC58<---------REM1(1)                                                               - ---------GT1<---------ATHB12                                           ---------->DOF2             < ->ICU4     <---------ARR11(1) <---------At5g28300                ----------->GT1               <---- --DOF2   ------------>ATHB5  <-----------GT1               <---------------AtSPL8            -------   taactcaagctccgaatcattggtgtagcttgttacagtcgaaattgttctattagttgatattagtactgtattaaagacgagattagatagtagttgt  17815500                 --------->YAB1              --------->RAP2.3(3)            <---------ZAT18                                                                  <-------     <---------AHL20(2)                               <------MYB46(1)                        --------    --------->AHL20(2)                                <------MYB83                          <-------- <---------AHL20(2)                                 <--------P                         --------->YAB1 ---------AHL20(2)             ----------->GT1    --------->ATHB12                 <------ZmHOX2a(1) -------->AHL20(2)  <---------ICU4                <---------MYB46(3)              ----------->GT1 ---------AHL20(1) --------->ICU4        <---------DAG2                          <---------TOE2(3) -----YAB1  --------->LBD16  ----------->GT1   <---------AtLEC2                --------->CCA1(2) ---->GT1 <---------LBD16 <---------LBD16<----------DOF2                     --------->CCA1(2)   aattaattttatcgcgcagtcaaaattatcggggtgaaaaaaactttttgtatggttggaattgaatgtgatcagtaagagataaggaaacataataaat  17815600  Previous    Next  AGI:  At4g37890.1    Description:  EDA40 (embryo sac development arrest 40); protein binding / ubiquitin-protein ligase/ zinc ion binding. similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT2G22680.1); similar to zinc finger protein [Medicago truncatula] (GB:ABY48131.1); contains InterPro domain von Willebrand factor, type A (InterPro:IPR002035); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) Range:  from: 17812730    to: 17815078    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At4g37895.1    Description:  other RNA Range:  from: 17813539    to: 17815172    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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