Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100        --------->ANAC58      --------->ANAC46      --------->ANAC58    <---------ALFIN1    --------->ANAC46  <---------ALFIN1 --------->HVH21                                                                  --------->AtLEC2 ---------HVH21                                                                   --------->ANAC58 ---------TGA1                                                                    --------->ANAC58 ----->O2                                                                        --------->WOX13(1) ----->ANAC58                                                                 --------->ANAC58 ----->ANAC55(2)                                                          --------->ANAC58 ----->ANAC58                                                             ------------------------>ANAC81 ----->TGA1a                                                              --------->ANAC58 ----->bZIP60(2)                                                      >>>>>>>>>TBF1       ----------- ------O2 <---------REM1(2)                                     --------------->AGL15   --------->DAG2 ----->ANAC46                                                   <---------------AGL15  ---------->DOF2 ----->ANAC55(1)     --------->YAB1                             ===================================== ------TGA1a         <---------ICU4                            <---------ANAC58 ---------->DOF2 ------ANAC55(2)    <---------ATHB12                      <---------At4g35610 --------->ANAC58 -------STF1      ------>ZmHOX2a(1)     <-----------RAV1(1)    <---------ANAC58<---------ATHB12 ----ALFIN1<---------ALFIN1   <---------ARR11(3)          --------->At4g35610--------->WOX13(1) -----   cgtcacacaccctacacatcctatcatgacattatctatattttgttggagtaagcttgaagcttacttgaagaagaagcaatcaagcaaaaaggaaatt  17712200                     <---------HSFC1(2)                      <------ZmHOX2a(1)                     --------->HSFC1(2)          ------>ZmHOX2a(1)    <-----------GT1  xxxxxxxxxxxxxxxxxxxx>smallRNA(se3)    --------->MYB59  --------->YAB1  <------ZmHOX2a(1)            ----------------->AGL1                  ---------->DOF2 >GT1  <----------DOF2   <---------ANAC46      ----------------->AG                   <---------AHL20(2) ================================================================MADS_MADS  <----------DOF2 ---->YAB1      <---------TOE2(3)    <---------ANAC46  <------ZmHOX2a(1) <---------ARR11(3)   agaattatactttgtgtttaggaagttgcctaaatacttatgtgtgttttcctaataggattaggaaattgtctagttcttttcatatataaaggagttg  17712300                                           <----------DOF2                                      <---------ANAC46                                      <---------ANAC58                      ---------->DOF2                                      <---------ANAC58                     --------->AHL20(2)                                  >>>>>>>>>ARR2                      --------->ANAC58                                  >>>>>>>>>ARR1<---------TOE2(3)     --------->ANAC58                                <---------YAB1 <---------TOE1(3)   ---------->DOF2                 --                 <---------YAB1 <---------TOE2(3)               --------->TOE2(3)              ------   --------->ALFIN1    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)  <---------AHL20(2)        <----------DOF2   caagagtgttgcaaaacttatgagttgagagattaagattgtgtgtttttaggttttgagttattttcttaaagcaataaaagagagagtcttttattca  17712400                                            <---------WOX13(1)                                          >>>>>>>>>>AGL24                                          <---------ICU4                                          <--------ATHB1                                          <XXXXXXXXXXXXXXXXXXXXMIR845A                              -                                          -------->ATHB1                                          <--                                          --------->ATHB51                                        ---                                          --------->ATHB12                   <----------DOF2     ----                                          --------->YAB1                 --------->YAB1          ----                                          >>>>>>>>>>AGL20              --------->ANAC58         -----                                          >>>>>>>>>>AGL22              --------->ANAC58       -------        <---------YAB1                   --------->ICU4                --------->ANAC46      --------     ---------->ID1                      <---------ATHB12     <------------CBF               -------- ------->GLK1(2)                         <---------ATHB51     <---------ICU4<---------ICU4---------->DOF2 --->YAB1  <---------YAB1             <-----------------AGL3<---------AHL20(2)      <------ZmHOX2a(2)   taatcttgttcttattcttgagtttgatatatagtttgaatcaataattggtatcagagcataatattgattcaagcatctttacgatcaaacaaaggca  17712500                       --------->SPL7                       --------->SPL1(2)                      <---------SPL1(1)                      --------->SPL1(1)                     <---------SPL1(2)                     <---------SPL7                    <---------ANAC58 -------->MYB52(1)  <---------ANAC55(2) -------ATHB12      <---------ANAC46    <---------ANAC58 ------>MYB46(3)    <---------ANAC58    <---------ANAC58 ----->ANAC58      --------------->AtSPL3                                    ------->GAMYB          - ----->ANAC58      ----------------->AGL1                                   <---------MYB52(2)      < ---->WOX13(1)    <------------------SPL14                                  --------->MYB46(3)   ---- ----->CBF       ------------------>SPL14                 *TSS  <---------------AtSPL8           <--- ->ANAC58  <---------ANAC46        ----------->GT1   --------->CCA1(2) --------->ANAC46---------->DOF2 ->ANAC58<---------DOF5.7(2) ---------->DOF2  XXXXXXXXXXXXXXXXXXXX>MIR774B--------->MYB52(1) xxxxxxxx   atcaacgaagttagcgttgattccgtacggagaaagaaggtaacttgtgaagaagacatgggcgatatagtaccagtaacgaacaacaccaaagaaggta  17712600                                     ------->GAMYB                                    <---------MYB52(2)                       ---------->DOF2                                    <------------MYB.PH3(2)                  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                  ----------->RAV1(1)             <---------YAB1                              --------->ANAC46                   <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)        ------>ZmHOX2a(1)    --------->SPL7                    ----------->HVH21 <-----------ARR10          --------->MYB52(1)                 ----------->TGA1 -------->At4g35610       <---------ANAC58                 <---------ANAC55(1)            --------->CCA1(2) ---------At4g35610       <---------ANAC58                 <---------ANAC55(2)         --------->ANAC58 ----->At4g35610      <---------At4g35610                  --------->ANAC55(2)         --------->ANAC58 ------At4g35610  <-----------HVH21 --------->MYB46(3)     --------->ANAC55(1)    --------->ZAT18   - xxxxxxxxxxxxxx>smallRNA(se3)--------->RAP2.6(3)    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) --------->ALFIN1   gcagctcttcctctattcaatgtccgatgcttacggcaacaaactatacgttttggacaatacgtatgacgatggctctaaaagttcacaaggtatggga  17712700                                                                                     <---------ANAC58                                              --------->ZAT18        ----------->HVH21                        ----------->GT1       <---------ZAT18      ----------->RAV1(2)                       <---------------------WRI1    ------>ZmHOX2a(1)               <---------ANAC58           <------ZmHOX2a(1)               --------->ANAC58        <---------LBD16   <---------ANAC46 -------->ATHB12    --------->ARR11(3)     --------->ANAC58  <---------ATHB12 <-----------GT1    ----   aacgattgaagaaggattagatgatatcgataaaaacaatatggcaagcgctctccttctccaatctatccctgaagcattaaccttgcgagttggaaaa  17712800                                                            ---------->DOF2                --------->CCA1(2)                          <---------WRKY12               --------->ARR11(1)                        <-----------HVH21               --------->ARR14(2)                       <----------ID1               <---------ARR14(2)                 ----------->HVH21               <---------ARR11(3)               xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)             ----------->ARR10                  <---------At4g35610        ---------->DOF2                         --------->At4g35610      --------->LBD16                     --------->TOE2(2)<---------WRKY38(1)     --------->RAP2.6(2)     ---------->DOF2  <------ZmHOX2a(1)   <-------TEIL ----->TOE2(3) --------->ARR11(3)         --------->TOE1(2)<---------WRKY45        --------->ATHB12   cttaaaaccgcaaagaagatatgggatgcgataaaggctagaaatctaggagctgatagggtcaaagatgcaagacttcagacattgatgggcgagtttg  17712900                                                                             ------>ZmHOX2a(2)                                                                            <------ZmHOX2a(2)                                                                           --------->ARR14(3)                                                                           <---------ARR14(3)                                                                           --------->ARR11(3)                                                                           --------->AGP1                                                                           <---------ARR11(3)                                                                           <---------AGP1                                                                           <---------ARR14(2)                                                                          <---------ARR14(1)                                                                          <---------CCA1(2)                                                                         ----------->ARR10                                                                       <---------At4g35610                                                                       --------->At4g35610         <-                                                                  ------>MYB46(1)                  --                                                                <---------MYB111(1)                --                                                                --------->AtMYB61      --------->ARR11(3)           ---------->DOF2                                     --------->ANAC46        <---------ARR11(3)      --------->ICU4                <---------ZAT14         <---------ZAT18--------->ARR14(2)      --    ---------->DOF2          --------->At4g35610            --------->ZAT18<-----------ARR10     ---- <------ZmHOX2a(1)           <---------At4g35610   --------->YAB1 ------>MYB83        --------->YAB1   aaaggataaagatgaaagaaactgagaagatagatgacttcgctggaagactctcagaattgtccaccaaatcagcagatcttgggaatgatattgaaga  17713000                                         --------->TOE2(3)                                      <---------DOF5.7(2)             --------->DAG2          <---------ARR14(2)      <------MYB83                   --------->ARR14(2)                                  <----------ID1      ----------->GT1             --------->ANAC58                        --------->ARR11(3)      <------MYB46(1)             --------->ANAC46           --------->ZAT14      =================== --------MYB59                    --------->ANAC58           --------->ZAT18      ------>ZmHOX2a(2) ------->TOE2(3)                 <---------LBD16      --------->ATHB12    <---------ARR11(3) ------->TOE2(2)              ------>MYB46(1)        <---------YAB1 <<<<<<<ZML2   --------->YAB1    - ------->TOE1(2)              ------>MYB83      <-------TEIL <---------ZAT14    <---------ARR11(3)  < --->TEIL   ---------->DOF2   -------->P----------->GT1      <---------ZAT18    --------->ARR11(3) <-   acctaagttggtgaaaaagtttctcaatagcctaccacggaaacgttatatacatatcattgctgcactagaacaagttcttgatcttaatacaacaagt  17713100  Previous    Next  AGI:  At4g37705.1    Description:  transposable element gene. copia-like retrotransposon family, has a 9.5e-203 P-value blast match to gb|AAG52949.1| gag/pol polyprotein (Endovir1-1) (Arabidopsis thaliana) (Ty1_Copia-family) Range:  from: 17712558    to: 17716685    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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