Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                               <-------                                                                                            <--------                                                                                           --------->ICU4                                                                                           <---------YAB1                                                                                         <--------HAHB4                                                                                         <---------ICU4                                                                                         --------->YAB1             <---------AHL20(2)                                                         <---------YAB1             <---------AHL20(1)                                                         <------ZmHOX2a(2)             --------->AHL20(2)      ----------->GT1                            --------->DAG2             <---------ARR11(3)     <---------TOE2(2)                          ---------->DOF2<------             --------->ARR11(3)     <---------TOE1(2)                     --------------->AGL15             --------->AHL20(1)    <---------MYB52(1)                     <---------------AGL15            --------->AHL20(2)   <---------ANAC58                      <-----------GT1 <---------ARR11(3)      ----------->GT1       --------->ICU4                            <---------YAB1   --------->ARR11(3) --------->GT1<---------AHL20(2) <---------ANAC58                   <---------ICU4    <------ZmHOX2a(1)   tttgtaactagaaaatatatttgctctgtaatttttcgtaagttaaatcaacatttttcagtagaaacaaatattactgcaaaaagtaggatcattattt  17691400                --------->At4g35610      <-----------ARR10      --------->ARR11(3)     ----------->GT1     <---------GLK1(2)    <---------REM1(1) --AHL20(1)    --------->MYB59 -ICU4<---------ARR11(3)<-------GAMYB              --------->ATHB12 ---------->DOF2          -------- ---YAB1     <---------MYB52(1)              <---------GLK1(2) --------->AHL20(2)           ---------   ttgtccaaaatctcagttagctatagggttgtagtaaaaacaaaacacattcttgatttgccccaaaaaataaagagagagaagaatattgttcaaaagt  17691500                          --------->ANAC46                        <-----------GT1                                                           <--                        --------->ZAT6                                                            ---                  <---------YAB1                               ---------->DOF2                    ---                --------->YAB1            <-------TEIL ---------->DOF2   --------->TOE2(2)        <-- ->DAG2         <---------ICU4       --------->YAB1  <---------REM1(2)   --------->TOE1(2)       ---- ->DOF2        --------->ICU4  --------->ANAC46    <---------ETT(2) --------->CCA1(2)     --------->AtLEC2   ggtctcttctctctctaattatgttttcactaaacccaattagattcaaacagtctacaaagtccaaaagataaacatgggacaacaattcgatgcaaaa  17691600                                                                    ------>MYB46(1)                                                                    ------>MYB83                                                                  <---------MYB46(2)                                                                  <---------MYB111(2)                                                                  <---------MYB111(1)    <----------DOF2                                               <---------MYB55(2)  ------>ZmHOX2a(1)                                               --------->AtMYB61 -------ARR11(3)                     --------->AHL20(2)           --------->MYB46(3)        --------- ------>ARR11(3)                     <---------AHL20(2)     --------->ARR14(2)       ------->GAMYB ------>ARR14(2)                    --------->AHL20(2)      <---------ARR14(2)      <---------MYB52(2) -------ARR14(2)    <---------AHL20(2)       --------->YAB1--------->GLK1(1)       --------->ANAC46 ----->RVE1(1) <----------DOF2   <----------DOF2--------->YAB1   --------->ANAC46--------->REM1(1)   aatcctcttttcatgctctttttttattctctagtcttttaaattactaataaaaactcacaaatccaccaaacccattctctacaactcaccttcatct  17691700            <---------ALFIN1                            --------->ANAC58           --------->MYB46(3)                           --------->ANAC58       ------>MYB46(1)                        --------->AHL20(2)       ------>MYB83                           <---------AHL20(2)                                    -      <---------ALFIN1                 <-------TEIL     --------->ANAC46                          <--     --------->MYB46(3)           --------->AHL20(2)--------->CCA1(2)                 --------->ANAC46   <-----------GT1        --------->ANAC58    ----------->TBP               ------------>CBF     ----  <-----------GT1         --------->ANAC58  ----------->TBP ----------->RAV1(1) *TSS--------->ANAC46< >REM1(1)  <---------MYB55(2)   --------->AHL20(2)  <-----------GT1   <---------At4g35610 ---------->DOF2   agatttacccactcccaccgagaaacacaagaaaaaaaatatacatatataaatatacaagacaacacatgatgctgatgcaatatacacaacaaagtat  17691800           <-----------RAV1(1)       --------->ARR11(3)       <---------ARR11(3)                                        <---------ARR14(2)  --------->TOE2(3)                                              <---------GLK1(2) -------->ARR11(3)                                --------->AHL20(2) -------AHL20(2) <---------GLK1(1)               --------->AHL20(2)      <----------DOF2 ----->AHL20(2) <---------PCF2                 --------->TOE2(3) --------->ARR14(2)           ------- ---------ARR11(3)     <----------DOF2   <---------YAB1   --------->AHL20(2) --------->ZAT6 ---------   taaatcttagatattgtgggtctccctttcttctattcattttcttattcattaaaaaaaaaaaatggatactctctttagactagtcagtctccaacaa  17691900                                                        --------->ZAT6                                                        <---------ALFIN1                                                        --------->AtMYB61                                                     --------->AtMYB61                                                     <---------ALFIN1                                            <---------ARR14(2)                                            --------->ARR14(2)                                            <---------ARR11(3)                 <---------ICU4         --------->At4g35610                 --------->YAB1         <---------At4g35610          <---------MYB52(1)--------->WOX13(1)       --------->DEAR3(1)   --------->MYB46(3)     <---------ATHB12  --------->ARR11(3)                           --------->REM1(1) -->MYB46(3)     <--------HAHB4      ---------->DOF2--------->MYB46(3)              --------->ZAT6 -- -->RAV1(1)     <---------YAB1      <---------MYB52(1) --------->MYB46(3)          <---------YAB1 ---   caacaacaatccgatagtatcattacaaatcaatcttcgttaagcagaacttccaccaccactactggctctccacaaactgcttatcactacaactttc  17692000                                                                                      --------->TOE2(3)                                                                                      --------->AtMYB61            <------NtERF2                                                             ------->GAMYB          <---------DEAR3(1)                                                         --------->MYB46(3)       <---------O2                                                             --------->YAB1   ----       <---------bZIP60(1)                                                   --------->AtMYB61 ------       --------->bZIP60(1)                                    <<<<<<<<<TBF1  --------->YAB1   <<<<<<<       --------->O2               <---------AtLEC2      ------>ZmHOX2a(1)    ------->GAMYB    <<<<<<<  --------->MYB52(1)         <---------DAG2        <----------DOF2          --------->MYB46(3)<<<<<<< ------->ANAC46              <----------DOF2    <---------ARR11(3)       --------->MYB46(3)   <<<<<<< ------>LBD16            --------->REM1(1)      --------->ARR11(3)     --------->AtMYB61   --------->MYB46(3)   cacaaaacgacgtcgtcgaagaatgcttcaactttttcatggatgaagaagacctttcctcttcttcttctcaccacaaccatcacaaccacaacaatcc  17692100                                                                                <------NtERF2                                                                               --------->LBD16                                                                              --------->DEAR3(1)                                                                              --------->RAP2.3(2)                                                                              --------->RAP2.6(2)                                                                              --------->ANAC46                                                                             --------->RAP2.3(1)                                                                             --------->ATERF1(1)                                                                            <---------ATERF1(1)                                                                            ------>NtERF2                                                                            <---------At4g35610                                                                            --------->ZAT2                                                                            <---------ZAT2                                                                            --------->At4g35610                                                                           --------->DEAR3(1)                                                                          <-----------RAV1(2)                                                                          --------->ATERF1(1)                                                                          --------->RAP2.3(1)                                                                          --------->ERF1                                                                          <------NtERF2                                                                         --------->ABI4(1)                                                                         <------NtERF2                                                                         <---------ATERF1(1)                                                                         <---------At4g35610                                                                         --------->At4g35610                                                                         ------>NtERF2                                                                         --------->LBD16                                                                        --------->DEAR3(1)                                                                        --------->RRTF1(2)                                                                        --------->RAP2.3(2)                                                                       --------->RAP2.3(1)                                                                      --------->ABI4(1)                                               --------->REM1(1)      <---------ATERF1(1)                                           ------>NtERF2              ------>NtERF2                                           <-----------HVH21         --------->ANAC46                                          --------->ANAC58           --------->DREB2C(2)                                          --------->ANAC46           --------->DEAR3(1)                                          --------->ANAC58           ------->GAMYB<---------At4g35610                                       ------>MYB46(1)               --------->AtMYB61                                       ------>MYB83                  <---------ALFIN1    <-----------GT1                    -------->P                   --------->MYB46(3) <---------ICU4               --------->MYB46(3)                    --------->DEAR3(2) -->ZmHOX2a(1)               --------->ANAC58  --------->bZIP60(2) <---------ATERF1(1) --->YAB1                    --------->ANAC58<---------ALFIN1     <---------ALFIN1--------->ZAT2 <<ARR2                      --------->ANAC46----------->RAV1(1)  --------->AtMYB61 <<ARR1           --------->ZAT6     --------->AtMYB61 -------->P--------->MYB46(3) <----------DOF2 <<ARR2        <----------DOF2<---------MYB55(2)     --------->MYB46(3)--------->RRTF1(1)      <----- <<ARR1 --------->ZAT14    <---------ALFIN1--------->LBD16      ------>ZmHOX2a(1) --------->At4g35610   taatacttactactctcctttcactactcccacccaataccatcccgccacatcatcaaccccttcctccaccgccgcagccgcagctttagcctcgcct  17692200                  <---------ICU4                  --------->YAB1                 --------->ICU4               --------->YAB1                                                              <---------ARR14(2)             ----------->RAV1(1)                                                         ----------->ARR10             ------>NtERF2                                                             --------->At4g35610            --------->RAP2.6(2)                                                        <---------At4g35610          ------>NtERF2                                                              --------->ZAT18         --------->ANAC46                                                           --------->ALFIN1         ------>NtERF2                                                            --------->O2       <---------LBD16        --------->LBD16                                     <---------O2      ------>ZmHOX2a(1)      <---------ANAC46        ------>ZmHOX2a(1)            <---------TGA1a   ------>ZmHOX2a(1) <-----------GT1       --------->TOE2(3)                      =================== ----DAG2--------->LBD16    <---------LBD16--------->TOE1(3)------>ZmHOX2a(1)     --------->TGA1a   -   tactcctcctccggccaccataatgacccttccgcgttctccatacctcaaactcctccgtccttcgacttctcagccaatgccaagtgggcagactcgg  17692300  Previous    Next  AGI:  At4g37650.1    Description:  SHR (SHORT ROOT); transcription factor. similar to scarecrow transcription factor family protein [Arabidopsis thaliana] (TAIR:AT3G49950.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN75901.1); contains InterPro domain GRAS transcription factor (InterPro:IPR005202) Range:  from: 17691780    to: 17693754    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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