Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100           --------->YAB1                                      --------->AHL20(2)        <---------AHL20(2)                          <----------DOF2                                 -    --------->AHL20(2)                           --------->ARR11(3)                                 <  --------->TOE2(3)                              <---------ARR11(3)                             <---- -----ANAC58                                    <---------GLK1(1)                               ----- -----ANAC58                ----------->GT1     --------->GLK1(1)       <---------YAB1      ---------   ttaaacttaaataatcaacaaaatacaaaacagtttaatggaaatagcagaaatctttttcaagaaaatacaatactattagataaaaacaattttgtta  17678900                <---------WOX13(1)              --------->ATHB12                                      <---------AHL20(2)             <---------YAB1                                 <---------ARR11(3)      <---------ICU4             <---------ATHB51                          --------->ZAT2               --------->YAB1             <---------ATHB12                          <---------ZAT2     ---------->DOF2 -------->AHL20(2)                                    ------>ZmHOX2a(1)  --------->AHL20(2) ---------AHL20(2)                            --------->ANAC55(1)   --------->AHL20(2)    <----------DOF2 -----AHL20(2)<---------ICU4                  --------->ANAC46   <---------AHL20(2)<---------ATHB12 ---->AHL20(2)--------->ATHB51 --------->DAG2 --------->ANAC58   --------->AHL20(2)<---------YAB1 -->GT1      --------->ICU4   ---------->DOF2 --------->ANAC58----------->GT1      --------->ICU4  --   aattaaaaaaaacccataattgactagcatcaaaaagtcttcaaacacaagtaatcctgctggatattaaaaaaataaaagagtaatcattcctttaaaa  17679000                                                                                                  <--                                                                                                  <--                                                                                                  ---                                                                                           --------->YAB1                                                                                          --------->AHL20(2)                                              --------->ARR14(2)                      --------->AHL20(2)            <---------ETT(2)          <---------YAB1                               --------->WOX13(1)            --------->ETT(2)       --------->ARR11(3)         --------->ZAT18     <---------AHL20(2)    --------->ICU4                 <---------ARR11(3)         <---------ZAT18     --------->AHL20(2)    <---------YAB1                --------->YAB1         <---------YAB1          --------->AHL20(2)<- <---------YAB1                  <---------YAB1  --------->ANAC46          --------->TOE2(3)  ------- --------->GT1          ---------->DOF2       <---------ARR14(2)           --------->TOE1(3)  -------   aatgtgattatttgtcgacccaaaaaaaaagagtgatgatattatacatatactcaaatattagtgaacaaataaaacctaaaattaatcaaataataaa  17679100                                                                        --------->LBD16                                                                      <---------LBD16                                                                     <---------TGA1a                                                                     ================================                                                                     <---------O2                                                                 --------->MYB46(3)                                                                 <-----------RAV1(2)                                                                <------NtERF2                                                                <---------At4g35610                                                                --------->At4g35610                                                               ------>NtERF2                                                             --------->ATERF1(1)                                                             <------NtERF2                                                            ------>NtERF2                                                            <---------ATERF1(1)                                                            <---------ERF1                                                            <---------ORA47(2)                                                            <---------RAP2.3(1)                                ------>NtERF2               <---------RRTF1(1)                               --------->DEAR3(1)           <<<<<<<<<AtERF-3                             ==================================================MYC_MYB                             ------->GAMYB                  <<<<<<<<<AtERF-4                            --------->ANAC58               <---------DEAR3(1)        <---------AHL20(2)  --------->ANAC58               <---------RAP2.6(2)   --------->AHL20(2)     ---------->DOF2                  --------->ATERF1(2)   <---------AHL20(2)     <-----------GT1                  <---------RAP2.3(2) -------ARR11(3) --------->MYB46(3)                        <---------RAP2.3(3) -------GLK1(2)<-----------GT1 --------->RAP2.3(3)        <---------LBD16 ------>ARR11(3) <------------MYB.PH3(1)                  --------->RAP2.6(3) --------RVE1(1)<---------At5g28300        --------->ANAC46<---------ATERF1(2) --->DOF2      --------->ARR14(2) <---------ALFIN1  <---------YAB1----------->HVH21          <------- -->YAB1--------->AHL20(2)--------->MYB52(1)  <---------ALFIN1 ----------->RAV1(1)          ---------   gatttttaatttaaatgtaaccgctaaataacgccccctctctctcccccacttatttttggcggcaccagacgcgggagactctctctctctctccact  17679200                                                                                     <---------ANAC58                                                                                     <---------ANAC58                                            --------------->AGL15                   <---------At4g35610                        <-----------HVH21   <---------------AGL15                   --------->At4g35610                        <-----------TGA1   ----------------->AGL1             --------->ATHB12      <----------DOF2<-----------GT1       ----------------->AG          *TSS<---------YAB1 ================bZIP_DOF                  ----------------->AGL2      <---------ARR14(2) --ALFIN1    <----------DOF2          ---------->DOF2                  --------->ARR14(2)        <--- >ZAT14   <-----------GT1           ------>ZmHOX2a(1)               --------->AHL20(2)        <------   ctctctctcttttttctttgttttttcgtcacttgctcctaaaatcccaaatcgagtaatggaagaaaaatcaaatacgatgatttagcttcccttctta  17679300                                                                                                  ---                                                                                      <---------DAG2                                                                               <---------ICU4 <------                                             <---------AHL20(2)               <---------YAB1  <------                                             --------->AHL20(2)           <----------DOF2    <------- ------YAB1             <----------DOF2  --------->AHL20(2)           <---------GLK1(2)<----------DOF2 ---YAB1     <---------At5g28300   <---------At4g35610        <XXXXXXXXXXXXXXXXXXXXMIR824    <-------   ttcttcccctatattcactgcgataactttgcctctcatctcataaattaaaaaaaaaacactcttctcacaaattctttataattccccttttgatgtg  17679400                                                           <------NtERF2                                                          ------>NtERF2                                                          <---------ATERF1(1)                                                         --------->RAP2.3(2)                                                         --------->RAP2.3(3)                                                         --------->DEAR3(1)                                                         --------->RRTF1(3)                                                        --------->ATERF1(1)                                                        <------NtERF2                                                        --------->RRTF1(1)                                                        --------->DEAR4(2)                                                        --------->RAP2.3(1)                                                        --------->ERF1                                                       ------>NtERF2                                                       <---------ATERF1(1)                                                       --------->ABI4(1)                                                       <xxxxxxxxxxxxxxxxsmallRNA(s)                                                      --------->DREB2C(2)                                                      --------->RRTF1(3)                                                      --------->RRTF1(2)                                                      --------->RAP2.3(3)                                                      <---------DEAR3(1)                                                      --------->RAP2.3(2)                                                      --------->DEAR3(1)                                                      --------->ATERF1(2)                                                      --------->RAP2.6(2)                                                     --------->RRTF1(1)                                                     <------NtERF2                                                     --------->RAP2.6(1)                                                     --------->ERF1                                                     --------->DEAR4(2)                                                     --------->ATERF1(1)                                                     --------->ORA47(2)                                                     --------->RAP2.3(1)                                                    <---------RAP2.3(1)                                                    --------->At4g35610                                                    <---------DEAR4(2)                                                    ------>NtERF2                                                    <---------At4g35610                                                    <---------ATERF1(1)                                                    <---------DREB2C(1)                                                    --------->ABI4(1)                                                   --------->RRTF1(2)                                                   --------->RAP2.3(3)                                                   --------->RRTF1(3)                                                   <---------DEAR3(1)                                                   --------->RAP2.3(2)            --------->At5g28300                                                   --------->DEAR3(1)             <-------GAMYB                                                   <---------ALFIN1              ----------->GT1                                                   <---------ATERF1(2)          <------NtERF2                                                   --------->ANAC46             --------->RAP2.3(1)                                                   --------->RAP2.6(2)         --------->ABI4(1)                                                  --------->RRTF1(1)           ------>NtERF2                                                  --------->RAP2.6(1)         --------->RRTF1(3)                                                  --------->ATERF1(1)         --------->ANAC46                                                  --------->ORA47(2)          --------->RAP2.3(3)                                                  --------->RAP2.3(1)         <---------DEAR3(1)        --------->DEAR3(1)                        --------->DEAR4(2)          --------->DEAR3(1)        <---------ALFIN1                          --------->ERF1             --------->ATERF1(1)        --------->AtMYB61                        ------>NtERF2               --------->RAP2.3(1)       --------->MYB46(3)                        --------->ABI4(1)           --------->DEAR4(2)     --------->ANAC58                            <---------ATERF1(1)         --------->ORA47(2)     --------->ANAC46                            --------->LBD16             --------->ERF1     --------->ANAC58       >>>>>>>>>TBF1        <---------At4g35610        <---------ATERF1(1)   <---------ALFIN1     --------->At4g35610      --------->At4g35610       --------->DEAR3(1) ------>SPL7   --------->At4g35610              --------->DEAR3(1)      <---------ICU4 ---------AtSPL8     --------->At4g35610        --------->ANAC46     <---------ICU4 ---------AtSPL3    ------------------------>ANAC81--------->ATERF1(2) <---------YAB1 -----------SPL14 --------->At4g35610     <---------CCA1(2)--------->ATERF1(1)--------->RAP2.3(2)  -- --ANAC46  --------->DEAR3(1)  >>>>>>>>>TBF1   <---------LBD16       --------->YAB1<---------MYB52(1)   tacggacacaccaccgaagcagaagcagaagaagaagaacacttctatctccgccgccgccgtcgtcttcatcatcatcgccgccgttaaatgggtgagc  17679500                                                                                           ------->TEIL                                                                                          <---------ARR14(2)                                                                                          --------->ARR14(2)                                                                                        --------->ANAC58                                                                                        --------->ANAC58                                                                                    --------->ANAC58                                                                                    --------->ANAC58                                                                              ------>ZmHOX2a(2)                                                                             <------ZmHOX2a(2)                               ------->TEIL                                  --------->CCA1(2)                               --------->ARR14(2)                            <---------At4g35610                               --------->GLK1(2)                            --------->ARR14(2)                               <---------ARR14(2)                           <---------ARR14(2)                            --------->ANAC58                                <---------AGP1<---------GLK1(2)                            --------->ANAC58                                --------->AGP1<---------ARR11(3)                        ------>NtERF2                                       --------->ARR11(3)     --                     --------->At4g35610                                   <---------GLK1(1)       <-                     <---------At4g35610                   ------>NtERF2   --------->GLK1(1)      <-- -------->DOF2       ------>ZmHOX2a(1)                    --------->DEAR3(1)<---------ARR11(3)    <--   ctaaagacagtctcgctctcttcctctgccacgaatcggagtcttctctaaacgaagacgacgacgagacgattgagagatctgataagcaagaacctca  17679600                                                            --------->ARR14(2)                                                            <---------ARR14(2)                                                      <---------GLK1(1)                                                      <---------HSFB2a(1)           <------ZmHOX2a(2)                         --------->GLK1(2)                <---------O2        <---------YAB1             <---------ARR11(3)--------->ARR14(2)               --------->O2 ------->ZAT14             <-----------RAV1(1)      <---------GLK1(2)   ------>MYB46(1) --------ZAT14         --------->ARR11(3)     ---------->DOF2           ------>MYB83  <---------bZIP60(1) -------DAG2         <---------YAB1--------->ARR11(3)<---------ARR14(2) -------->P    --------->bZIP60(1) --------DOF2   --------->YAB1     <---------ARR14(2)<-----------ARR10 <---------ALFIN1           <--   ctttactactacgatcgatgatgaagattatgtggcagaccttgttcttaaagagaatctccgattcgaaaccctaccctctaaaacgacgtcgtcttcc  17679700                                                               --------->ARR11(3)             <------                                                --------->ARR11(3)                       <------MYB46(1)               --------->ATHB12                 <---------GLK1(2)------>ZmHOX2a(2)       <---------MYB46(3)       <---------WOX13(1)          <---------MYB52(1)   <---------DAG2                   <------MYB83      <---------ANAC58           --------->ANAC55(2)<-----------GT1                    <---------WOX13(1)      <---------ANAC58           --------->ANAC46  <-----------GT1    ---------->ID1 --------->ATHB12     --------->ATHB12<---------GLK1(2)          <---------ARR11(3)<----------DOF2  <---------WOX13(1)   <---------WOX13(1)--------->ARR14(2)     ---------->DOF2    <---------ARR11(3)--------->ATHB12 --- -------MYB52(1)     <---------ARR14(2)--------->TOE2(3)<----------DOF2         <---------YAB1-------   gatagattgattgccatcgattggattctcactgtccgtaatctcaaaaagattttcccttttttgatctttgtcttaatctctgattgattggttcttt  17679800  Previous    Next  AGI:  At4g37630.1    Description:  CYCD5;1 (CYCLIN D5;1); cyclin-dependent protein kinase. Identical to Cyclin-D5-1 (CYCD5-1) [Arabidopsis Thaliana] (GB:Q2V3B2;GB:Q6NMC8;GB:Q9SZF6); similar to CYCD1,1 (CYCLIN D1,1), cyclin-dependent protein kinase regulator [Arabidopsis thaliana] (TAIR:AT1G70210.1); similar to D5-type cyclin [Populus trichocarpa] (GB:CAN88862.1); contains InterPro domain Cyclin D (InterPro:IPR015451); contains InterPro domain Cyclin (InterPro:IPR006670); contains InterPro domain Cyclin-related (InterPro:IPR013763); contains InterPro domain Cyclin, N-terminal (InterPro:IPR006671); contains InterPro domain Cyclin-like (InterPro:IPR011028) Range:  from: 17679273    to: 17681196    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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