Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100             <---------AHL20(2)                                                                   -----       <---------AHL20(2)                                                                     <------       --------->AHL20(2)                                              <---------YAB1     --------->AHL20(2)      --------->AHL20(2)                                            <<<<<<<<<MYB2         <---------AHL20(2) --------HSFB2a(2)                    <---------AHL20(2)          <------MYB46(1)  <-----------GT1 ------->HSFB2a(2)      <----------DOF2                           <------MYB83    <---------AHL20(2) --GAMYB <---------TOE2(3)    <---------MYB46(3)            ---------->DOF2       --------->AHL20(2)   tgtagaaaattaatgaattgtatacactttgtttgttcatttttttttttttttttttgtgcgaaagttggttttcattagaaattaaacatttaaaccg  17674200                                                                                                  ---      --------->LBD16                                                                         -------     ------->GAMYB                                                                            <------    <---------LBD16           --------->ANAC58     --------->At4g35610                       >>>>>>>>   -------->P    --------->ANAC58        <---------YAB1           <---------YAB1            ------>MYB83 <---------WRKY12--------->ANAC58 <---------MYB59  <---------At4g35610                      --------- <---------WRKY38(1)      --------->ANAC58        <---------ARR14(2)                        ------>MYB46(1) ---->LBD16 ---------->DOF2   --------->ANAC58    --------->ARR14(2)     <---------LBD16  <---------MYB59 ---LBD16 <-------TEIL    --------->ANAC58 ---------->DOF2       <-----------GT1  ----------->GT1 ---   gagtcaaccgggtacaaagacgaaattgaagcaagacccaattttgaaagggcatctgcaagtcgattttcatttcgagggatagagtgaaacctaacaa  17674300           ------>NtERF2          <---------TGA1a          ================================================MYC_MYB          --------->TGA1a          --------->O2        ------>NtERF2       --------->DEAR3(1)                          <---------MYB52(1)            <<<<<<<<<<WRKY26       --------->ANAC46    <---------ANAC58       <-------GAMYB            <---------ANAC58  --------->ARR14(2)       <---------ANAC58  --------->GLK1(1)             <---------ANAC46 ------>ANAC58             <---------ANAC46  <---------At4g35610     --------->ALFIN1               - -->MYB46(3)       <------ZmHOX2a(1)         <---------GLK1(1) --------->HSFB2a(2)                  - ---MYB52(2)      ----------->GT1            --------->At4g35610     ----------->HVH21   <---------ANAC46 >MYB98----------->HVH21 <---------ARR11(3)  --------->ZAT2    <---------HSFB2a(2)    <-----------RAV1(1) >MYB52(1)<---------O2   --------->ARR11(3)  <---------ZAT2<---------GLK1(1)<----------DOF2       --- ------>ANAC58  <------ZmHOX2a(1) <------ZmHOX2a(1)--------->DOF5.7(2)     <---------ANAC58     -----   acccaatctccgacgcgaggaggagaatatcgtgtaggattccatggagctccgttaatggagttctcgaggtgatggctttgatcaactgttgtgaatc  17674400                                   <---------ANAC58                                   <---------ANAC58                                   <---------ANAC46                                     <---------TOE1(2)                             ------>ZmHOX2a(2)                                       ------>ZmHOX2a(2)                            <------ZmHOX2a(2)                                        ================                           <---------ARR14(2)                                      --------->ARR11(3)                           <-----------ARR10                          <---------ZAT2<------ZmHOX2a(2)                           <---------AGP1                             --------->ZAT2=================                           --------->ARR11(3)                         <---------At4g35610                           --------->AGP1                         <-----------HVH21--------->ARR14(2)                           <---------ARR14(3)        --------->HSFC1(2)            <---------ARR14(2)      ----------->HVH21    <---------ARR11(3)        <---------HSFB2a(1)  --------->ALFIN1    <------ -------->ANAC58           --------->ARR14(2)        <---------HSFC1(2)  <-----------HVH21    <------ -------->ANAC58           --------->ARR14(3)       --------->ANAC58  --------->At4g35610<---------YAB1 ------>At4g35610   <---------ARR14(2)--------->At4g35610    ---------->DOF2       <---------ARR11(3) ---->YAB1     ----------->GT1<----------DOF2       --------->ANAC58<-----------RAV1(2) <---------TOE2(2)   agaagcaattgacagagaggtgaatccaagatctttggcttgctgaagagcgagaagcatcgccaaagcttcagctgtgagggccgatcttatgtttctt  17674500                                   ------>ZmHOX2a(2)                                  <------ZmHOX2a(2)                                               <--        ----------->GT1          <---------ARR14(2)          <-----------GT1        --------->AHL20(2)   <------ZmHOX2a(1)             --------->ARR11(3)      --------->AHL20(2)         --------->AHL20(1) <---------TOE2(3)               --------->ARR14(2)     <---------AHL20(2)          <---------AHL20(1) =========HOX2a_HOX2a            <---------ARR11(3)     --------->AHL20(2)          <---------ARR11(3) =========HOX2a_HOX2a          --------->DEAR3(1) --------->LBD16     --------->ARR14(2)    <-------- ---ANAC58                 --------->ZAT18       <---------ANAC58     <---------ARR14(2) <-----------GT1 ---ANAC58                 --------->ETT(2)      <---------ANAC58--------->MYB52(1)*TSS  <---------AHL20(2)   gctgaggaatgggtatatttgttaatttgtccaccgatcttatttctgtgtccgtgaaataaataactatcgaatatgtccatcgatatattaactttgt  17674600                                 --------->ZAT18                                       ----------->GT1                                 <---------ZAT18                                     ---------->DOF2                             <---------ICU4                                       --------->YAB1      <---------AHL20(2)     --------------->AtSPL8                             <---------WOX13(1)     <---------AHL20(1)     <---------ATHB12                                   <------------CBF    <---------CCA1(2)     --------->WOX13(1)      <---------AHL20(2)          --------->ATHB12 -------MYB46(3)        ------------>CBF        <---------AHL20(2)           --------->ICU4 --DOF2           ------------>CBF            <---------AHL20(2)           <------------CBF      <---   ttgttcatatattttggagtaacaatgtcaatgagtaccctctagcatatatttttttttttttgggcaaactctagcattgattgataaagaaaaacag  17674700                                                           <-----------HVH21                                                       ------->MYC3                                                       <-------MYC3                      <---------ANAC46           <---------YAB1            ------->TEIL <---------ETT(2)      <---------ICU4             <---------AHL20(1)       <---------AtLEC2  --------->ETT(2)     --------->ICU4              --------->AHL20(1) <---------YAB1      --------->MYB59         --------->TOE2(3)            --------->ARR11(3) ------GLK1(2)     <---------MYB52(1)       --------->REM1(1)            <---------CCA1(2)       <---   attgttatagcatggacctcagttatgtagaccggctacattggctacattattacacatgggtcactctcacttatatattgggcctgtagaaacattt  17674800                                                 --------->ARR11(3)                                         <---------YAB1                                       <---------ICU4--------->ANAC46                                       --------->ATHB12                                       --------->ATHB51                     --------->YAB1    <--------HAHB4--------->LBD16                    <---------YAB1    <---------YAB1<---------HSFB2a(2)                   --------->AHL20(2) --------->ICU4--------->HSFB2a(2)                <---------DAG2      <---------------AGL15                --------->TOE1(3)   --------------->AGL15                      <---------ICU4 ---------->DOF2--------->TOE2(3)  ----------------->AGL2      --------->MYB52(1) ------YAB1  <-----------GT1       ----------------->AGL3 --------->ICU4--------->ZAT6   tgataaagatgggtcttaccttataataagttttaggcccattattagtaatatcccgaaatgcttaacagttaacactcactattacatctacttctct  17674900                                                        --------->HSFC1(2)                                                        <---------HSFB2a(1)                                                        <---------HSFC1(2)                                                        --------->HSFB2a(1)                                                       ------->TEIL                                                 --------->TOE2(2)                                             <---------AHL20(2)                                            --------->AHL20(2)                                        <---------AHL20(2)                                        --------->AHL20(2)                                       --------->AHL20(1)                               ------->GAMYB                                       <---------AHL20(1)                              --------->MYB46(3)                                       <---------AHL20(2)             <----------DOF2  <---------MYB52(2)                                       --------->AHL20(2)<----------DOF2 --------->AHL20(2)   <------   tgtggagaatggagatagtcgcatactatagcattacaaaatttaattttatctacgaactttcgcaattttcttttaaatctatagcaacgaactcttt  17675000                                                   --------->ATHB51                                                   <--------ATHB1                                                   <--------HAHB4                                                   <---------ICU4                                                   --------->ATHB12                                                   -------->HAHB4                                     <---------ANAC55(2)                             <---------At4g35610   --------->YAB1                            --------->ARR14(2)    <---------YAB1                            <---------ARR14(2)    <---------ATHB51                            ------->TEIL<-----------HVH21                         --------->ANAC55(2)      --------->ICU4                   --------->AHL20(1)<---------ANAC58                   --------->AHL20(2)<---------ANAC58                   <---------AHL20(2)--------->ANAC55(2)                  --------->AHL20(2) <---------ANAC55(1)                        <-----------GT1       --------->DAG2    <---------ANAC55(2)    --------->YAB1  <---------AHL20(2) <-----------GT1  <---------AHL20(2) <---------ANAC46           --------->AHL20(2)   <---------MYB52(1) ----DOF2   ----------->GT1<---------CCA1(2)  --------->At5g28300         <---------YAB1   ttttaacaaaaattgagtaaaaaaattatgtatctgatttcgtgtcactgtaataattagatgttataaattttgtatgatttttctgttttttttttgt  17675100  Previous    Next  AGI:  At4g37620.1    Description:  transposable element gene. similar to RNase H domain-containing protein [Arabidopsis thaliana] (TAIR:AT4G09490.1); similar to 80C09_17 [Brassica rapa subsp. pekinensis] (GB:AAZ41828.1); contains InterPro domain Ribonuclease H; (InterPro:IPR002156); contains InterPro domain Polynucleotidyl transferase, Ribonuclease H fold; (InterPro:IPR012337) Range:  from: 17674185    to: 17674583    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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