Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                            --------->YAB1                                                                                         --------->ICU4                                 ----------->RAV1(2)                        --------->LBD16         <                                 --------->At4g35610                       <---------ANAC55(1)     <-                  --------->ARR14(2)                                       <---------ANAC58        --                  <---------ARR14(2)                                       <---------ANAC58 ---------                  --------->GLK1(2)     <---------ANAC58                   --------->ANAC55(2)    <--                 <---------ARR14(1)     <---------ANAC58       --------->ANAC46          <---------YAB1     <---------MYB52(1)      --------->ARR11(3)               --------->LBD16 --------->REM1(2)<----- --ARR10  <----------DOF2    <---------ARR11(3)     <----------DOF2        <---------ANAC46 <--------   cccatccgatagctttagcgaatccgaacaacatcttctgaggcttactctccgctttcaattccacagaacagcatccgtgttgatggtgatgatgatg  17546100           ------>ZmHOX2a(2)                                                                        - -------GAMYB                           <---------AtMYB61                                           < --------MYB46(3)                  ------>ZmHOX2a(2)                                                - ------->MYB55(2)            --------->YAB1               --------->ANAC58  <---------MYB46(3)    --- >ICU4   --------->ARR11(3) <---------YAB1     ------>ZmHOX2a(2)    --------->DEAR3(2)        <------ -------AtMYB61<---------ANAC58  --------->ARR11(3)       --------->ANAC58 --------->ALFIN1   ------- ----AtMYB61   <---------ANAC58<---------YAB1<---------ARR11(3)    --------->ARR14(2)   <---------TOE2(3) -YAB1   <---------ARR11(3) --------->ICU4   --------->ARR11(3)    ------->TEIL        --------->MYB52(1)   gtggttgtgatgatcttgctcgtcatcgtgatgatgatcgtgatggtgatcttcgacagcacgtagacgaatcgaccgtggtggaagattaagggaagca  17546200           <---------ARR14(2)  <-------TEIL --------->CCA1(2) --------->ARR14(1) -------->ARR11(1) ---------ARR14(2) -------->ARR14(2)  <---------------------WRI1                                                      < -------->ARR10   <---------ANAC46 --------->ALFIN1                                                 - ---At4g35610    <---------LBD16 <---------ANAC46      --------->WRKY38(1)   ----------->GT1   ------ -->At4g35610  ----------->HVH21<---------TOE2(3)      --------->WRKY12<------NtERF2   --------->ANAC46   gagatacgaagcggtttttgacggagaagagttttaggtggaagaattgagaacgagttgactcgagcgagtcggagagtggataaaccacgacgataag  17546300                                                          <---------At4g35610                                              <---------WRKY12                                              <---------DEAR3(1)                        <---------GLK1(2)                                              <---------ETT(2)                        <---------ATHB12                                              <---------WRKY38(1)                ------>NtERF2     -- ---------ARR14(2)                            --------->ETT(2)               --------->ANAC46      <- -------->GLK1(2)                 <---------TOE1(2)       --------->At4g35610--------->ANAC58   ----- --->DAG2     <------ZmHOX2a(1)  <-----------RAV1(2)------->TEIL             --------->ANAC58 -------   ggaatctagtaagagaggaagaacgagtaagagttgcaggttccatggtcgacgaatttgagctcaagcgtcgtttttcatgccaccattgattctgatc  17546400                                                                              -------->HAHB4         <---------ANAC46                                                     *TSS  --------->At4g35610         <---------ANAC58                                                     <---------ICU4         <---------ANAC58                                                    <---------YAB1 ------->HSFB2a(2)                                --------->YAB1             --------->ICU4 --------HSFB2a(2)                  ---------->DOF2  --------->MYB52(1)      <---------ATHB51   ----- ->ZmHOX2a(2)         <---------MYB52(1)          <---------ICU4    --------->MYB46(3)----------->HVH21 -->ARR11(3)        <---------MYB46(3)         --------->YAB1  <------ZmHOX2a(1)    <---------At4g35610   tcgcgaactctgcgtgtaagagtcgttcgtcttggtgaaaaagatgaaagaataataacagagaaggagaaccaatgtaattattccgatgacattagcc  17546500                                                                 <---------HSFB2a(1)                                                                 --------->HSFB2a(1)                                                                 <---------HSFC1(2)                                                                 --------->HSFC1(2)                                                              ------->GAMYB                                                             --------->MYB46(3)                                                             <---------ATHB12                                                            ------>MYB83                                                            -------->P                                                            ------>MYB46(1)                                                           --------->MYB55(1)                                                          --------->MYB46(3)                                                          <---------MYB55(2)                                                          <---------MYB46(2)                                                          --------->AtMYB61                                                          <---------MYB111(2) <---------ANAC46-------                                                         --------->MYB46(3)   <---------HSFB2a(2)                           <---------AHL20(2)     <---------ANAC58            --------->HSFB2a(2)  --            <---------At4g35610  <-----------GT1  <---------ANAC58     <------------CBF    <---------    <---------AHL20(2)    <---------AHL20(2)   ---------->ID1<---------MYB55(2)--------->LBD16<------  --------->YAB1      <---------DAG2         <-----------RAV1(1)<---------TOE2(3)     <---------AHL20(2) ------>RAV1(1)       <----------DOF2   <---------AHL20(2)<---------MYB111(1)<---------LBD16 --------   acataaataatctcatctcatacacttttttattttttccattttttttgttgccttctaccaaccaaggttccattgttccggatgttttattgaccac  17546600                                                                            <---------ICU4                                                                            --------->YAB1                                                                        <---------YAB1                                                                  <---------ARR14(2)                                                                  <---------ARR11(3)                                                                  --------->ARR11(3)                                                                  --------->GLK1(2)                                                           <---------ZAT2  --------->ICU4          <---------AtLEC2                   <---------AHL20(1)   <-----------ARR10 -------->AGL15       ----------->GT1        <---------AHL20(2)   --------->ARR14(2) -------->DOF2     ------>MYB46(1)           --------->AHL20(1)  <---------CCA1(2)    <---------At4g35610 --GT1  <-----------GT1                ----------->GT1     --------->At4g35610        --------->At4g35610 ---------AGL15    ------>MYB83      <---------ANAC46      <---------At4g35610<---------YAB1 --------->AGL2------->TEIL     ---------->DOF2            --------->ZAT2  <---------ATHB51   ttaaagaaatttacatgaaccaaatagttaacttcaaaggcctgtaaaatatttcatattcagctgcaaatcttacaattatgaattcatcagaaaaatg  17546700                                     <-----------HVH21                              ------>ZmHOX2a(1)                              --------->LBD16                             <---------LBD16                                   --------->YAB1                       <---------AHL20(2)                                 --------->TOE2(3)                    --------->AHL20(1)                            --------->At4g35610                 --------->YAB1   <---------At4g35610      <----------DOF2--------->TOE1(3)  --------->GLK1(1) <---------AHL20(1)               <----------DOF2      <---------DAG2  <---------GLK1(1) <---------ARR11(3)         <----------DOF2    ----------->RAV1(2)--------->YAB1   aaggaattctaaattacaacaatatttttttcctggagatgtcagtcgtcttttcctttgcctttaccatctgaaaccttatcagaatcatatgctgatg  17546800                                                  --------->LBD16                                                 <---------HSFC1(1)                                                 --------->HSFC1(1)                                                 <---------HSFB2a(2)                                                 --------->HSFB2a(2)                                                <---------LBD16                <---------GLK1(2)             <-----------GT1              <---------YAB1             <---------CCA1(1)          <---------ZAT14                <---------RVE1(1)          --------->ZAT14               <---------ARR11(3)            <---------MYB52(1)          --------->ZAT18             --------->ICU4                ----------->GT1             <----     ---------->DOF2                ---------->DOF2     ----------->GT1 ---------->DOF2         -----   --------->ANAC58  --------->At4g35610--------->ARR11(3)        <---------At5g28300--------->YAB1   --------->ANAC58  <---------At4g35610<---------GLK1(2)        <-----------GT1  --------->GLK1(1)   gtagcaagaaagtgctctgattcttctgaataaacctgtaaagatttttttccagaaattgtgaatttaaccgttaaaaccgagaaatcaaaatggtagt  17546900                                                                                                 ----                                                                                                -----                                                                                                <----                                                                                               <-----                                                  <---------ANAC58                             ------                                             --------->MYB52(2)                                ------                                             <-----------RAV1(1)                               <-----                                         --------->ICU4                                        <-----                                         <---------YAB1                                        ------                             <------ZmHOX2a(1)<-------GAMYB                                    <-----                           <---------TOE2(3) <---------MYB46(3)                                ------                     <---------AHL20(2) <---------TOE2(3)                                     ------- -----ZAT6       --------->CCA1(2)  --------->YAB1<---------ANAC46                           -------- ---->ICU4      --------->ARR11(3) <---------YAB1 <---------ANAC58   <<<<<<<<<TBF1         ----------   gatgaaacagagagattagatatatacttgaggaagtctgataatgtttgttgcatgcgactccatgtttcttcttccatgtttacatatgaaaaaagat  17547000  Previous    Next  AGI:  At4g37270.1    Description:  HMA1 (Heavy metal ATPase 1); copper-exporting ATPase. Identical to Putative cadmium/zinc-transporting ATPase HMA1, chloroplast precursor (HMA1) [Arabidopsis Thaliana] (GB:Q9M3H5;GB:Q5JZZ1;GB:Q9SW66); similar to HMA2 (Heavy metal ATPase 2), cadmium-transporting ATPase [Arabidopsis thaliana] (TAIR:AT4G30110.1); similar to hypothetical protein OsI_023399 [Oryza sativa (indica cultivar-group)] (GB:EAZ02167.1); similar to predicted protein [Physcomitrella patens subsp. patens] (GB:EDQ72732.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO71924.1); contains InterPro domain Haloacid dehalogenase-like hydrolase; (InterPro:IPR005834); c Range:  from: 17540484    to: 17546478    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At4g37280.1    Description:  MRG family protein. similar to chromatin binding [Arabidopsis thaliana] (TAIR:AT1G02740.1); similar to MRG family protein, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA94215.2); contains InterPro domain Histone H4 acetyltransferase, NuA4 complex, Eaf3/MRG15 subunit (InterPro:IPR017398); contains InterPro domain MRG; (InterPro:IPR008676); contains InterPro domain Chromo domain; (InterPro:IPR000953) Range:  from: 17546578    to: 17549418    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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