Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                     --------->ARR14(2)                                                   <---------ARR14(2)                                               --------->ANAC58                                               --------->ANAC46                                            <-------TEIL                                     <-------                                           --------->CCA1(2)                            <---------ARR14(2)               <---------ANAC58         --------->ICU4                                  --------->ARR14(2)         --------->ATHB12        <------ZmHOX2a(1) --------->GLK1(2)                    --------->GLK1(2) ----------HVH21             ------>ZmHOX2a(1) --------->ANAC58             --------->AHL20(2) ------>TOE1(3)<---------ANAC58<---------TOE2(3)  <---------GLK1(2)    <---------YAB1  <---------GLK1(2)   ccttcagacactgatttgggtgctacgactcctaaggatgtcaagattcaaggaatctggtattgccaacttgatgaataaaacatagagaatctgtttg  17517600                                                                       <------MYB83                                                                    <---------MYB52(1)                                                                <---------------AGL15                                                                --------------->AGL15                                                               --------->ANAC58                                                               <-----------------AGL2                                                               <-----------------AGL1                                                               <-----------------AG                                                               ======================================                              <------ZmHOX2a(1)                <-----------------AGL3                            <---------TOE1(3)                  --------->ANAC58                            <---------TOE2(3)             --------->ALFIN1  --------->ZAT6   <-------                       --------->ATHB12                   --------------->AtSPL8  <---------ZAT18  <----------DOF2     --------->ICU4                     <-------MYC3  <------MYB46(1)<----------DOF2 --MYB52(1)           <---------YAB1                     ------->MYC3  ----------->GT1<---------DAG2   ttttctttttctgtaaatgttgttatgattaaggaatattgattccagttcatagtacatgtggtactccatttggtaacactttgcacttttggcttta  17517700               <---------YAB1          <---------AHL20(2)                                             <---------ANAC46          -------->ATHB1                   <---------TOE2(3)             <---------ANAC58          <---------ICU4                   <---------YAB1                <---------ANAC58          --------->ATHB12           --------->LBD16                  <---------WOX13(1)          --------->ATHB51          <---------ANAC58               <---------YAB1          -------->HAHB4            <---------ANAC46               <---------AHL20(2)         <---------ATHB51          <---------LBD16             ----------->GT1         --------->ICU4        --------->ATHB51               ------>ZmHOX2a(2)         <---------ATHB12      --------->ATHB12              <------ZmHOX2a(2)              <--------       <---------ICU4          -------->ATHB1               <---------ARR11(3)            --------->ATHB12      ====================================================================================MADS_MADS      <---------------AGL15    <---------ICU4               --------->ARR14(2)           <---------YAB1      --------->ICU4          <---------ATHB51              --------->AGP1--------------->AGL15  <---------GLK1(2)           <---------YAB1                --------->ARR11(3)         --------->YAB1  --------->ARR14(2)          --------->ICU4                <---------AGP1<---------------AGL15  <---------ARR14(2) ---------->DOF2<---------ANAC58        <---------ARR14(2)        --------->ICU4 =====================MADS_MADS-------->HAHB4              <---------CCA1(2)     ------->GAMYB ---DOF2 <---------YAB1       <---------ATHB12    <---------AHL20(1)--------->ATHB51---------->DOF2   atcagatactaattattgtgattaaaagactaattattgcggattaagataacatatttgtagatctgtataattgcttgtaacagcaaagatgatttct  17517800                           --------->ANAC58                                           <---------ANAC58                           --------->ANAC58                                           <---------ANAC58                      --------->YAB1                                           <-----------GT1                     <---------AHL20(2)                                  ---------->ID1                   --------->YAB1                >>>>>>>>>>>>>>>>>LFY<----------DOF2------>MYB46(1)     ----------->GT1 <---------YAB1           <-----------GT1     <---------ALFIN1  ------>MYB83 -GLK1(1)<XXXXXXXXXXXXXXXXXXXXMIR1886.3  <---------DAG2   <-----------HVH21<----------DOF2        ---   ggttaagaagtaagaagagatttataattaagcaaaccatttgccttatgaccccattgttgtcacatccactttgtcttttcaccttccctgtctcaaa  17517900                                                                                           --------->At4g35610                                                                                         <-----------RAV1(2)                                                                                     ---------->DOF2                                                                                   <------ZmHOX2a(2)                                                       --------->ARR11(3)         --------->ARR11(3)                                                       <---------ARR11(1)         <---------ARR11(3)      <---------ARR14(2)                              <---------CCA1(2)           <-----------ARR10     <------ZmHOX2a(1)                        ---------->DOF2        ----------------->AGL2---------- ------>MYB52(1)        <-----------GT1  ------>ZmHOX2a(1)<----------DOF2      *TSS==================   aaacagaggacccttgctctgtttcttaaccctgttttatctcctactcaaagttcaaatcttttgcgaaacccagtaatggaagatcaaagcaggtgaa  17518000                                                             <---------ANAC46                                                            <------NtERF2--------->At4g35610                                                          <---------DEAR3(1)                                                          --------->DEAR3(1)                                                          <---------ANAC46       <----------DOF2   <------ZmHOX2a(1)                                    ------->GAMYB    --------->ZAT2 ->GT1           --------->DOF5.7(2)                 --------->MYB52(1)  <---------At4g35610 =========HOX2a_HOX2a                       ----------->GT1------>NtERF2 <---------ZAT2       -------   aatgaggagaactagagacgttaacaagggctcttgttcaaggagatggtaagaacaacggcgtcgtttggaaccagctcaagctttgttcttcgtctcg  17518100                                                       --------->GLK1(1)                                                      --------->ARR11(3)      ----------->GT1                                          <---------TOE1(3)                  --------->HSFB2a(2)                           <----------DOF2<---------TOE2(3)           <---------ALFIN1                 <---------At4g35610     <---------DOF5.7(2)       --------->ZAT6    --------->WOX13(1)                 --------->At4g35610   --------->DOF5.7(2)         --------->ANAC46 <---------AHL20(2)              <---------At4g35610 ------->MYC3        <---------ARR11(3)     <---------HSFB2a(2)       <------------------------ANAC81<----------DOF2--------->HSFB2a(1) <---------DAG2     <-------- -->HSFB2a(2) ------>ZmHOX2a(1)   <-------MYC3----------->TGA1     --------->REM1(1)--------->AHL20(2)   gacaaactctgttttcctctgcttcgcttcttttcatgtgctttaacgatgacgaagatttctacgcttacaccaccttctggtaataaatcaaatcatt  17518200                                                   <---------ANAC55(2)                              -                                                   <---------HSFB2a(2)                              -     <---------ICU4                                --------->HSFB2a(2)                            <-- --------->AHL20(2)                                --------->ANAC55(2)                  <---------ALFIN1 <---------AHL20(2)                          ------->TEIL               <-----------HVH21         <-- -ATHB12           --------->ALFIN1       <---------YAB1   <---------MYB52(1)        ----------->HVH21   catttaaaaattagaaaccaagtgtcgaaacaagagacttaactatgaatgttatggaacagttatctagtcacagtcatgggtttagtgacaccttgga  17518300             --------->MYB52(1)     <---------MYB52(1)     --------->DOF5.7(2)   <---------bZIP60(1)   <---------O2   --------->bZIP60(1)   <---------TGA1a   --------->TGA1a                --------->TOE1(1)   --------->O2                   ----------->GT1   <---------ANAC58              ------>ZmHOX2a(1)           ----------->GT1   <---------ANAC58 <---------At4g35610                   ----------->RAV1(1)   <---------ANAC46 --------->At4g35610                   --------->MYB52(1)           --------->ARR11(3) ---------->TGA1    <---------HSFC1(2)                 --------->ANAC58        <---------DEAR3(1) ---------->HVH21   --------->HSFB2a(1)                --------->ANAC46      <-----------HVH21      < -------ANAC58      <---------HSFB2a(1)                --------->ANAC58<-----------HVH21--------->GLK1(2) -------ANAC58      --------->HSFC1(2)           ------>ZmHOX2a(1)<---------CCA1(2)    <---------ARR11(3)   gcgtgacgttagccctaatggaagcttactcaatcctcgtaaaaaaacttcctatgcaagcaacagttatatctgtcatcgtcgctggagattttgtaag  17518400                                                   <---------ANAC58                                        --------->AHL20(2)                                        <---------AHL20(2)                                   ------>MYB83                                       <---------AHL20(1)                                    ------>MYB46(1)                                       <---------AHL20(2)                               <-----------GT1                                       --------->AHL20(1)                            --------->ALFIN1                --------->TOE1(3)      --------->AHL20(2)                         --------->DAG2  <----------DOF2             <-------TEIL         <---------ANAC58             ---------->DOF2 ---------YAB1  --------->TOE2(3)<---------At4g35610  <-----------HVH21      <---------TOE2(3)      -   tcatctttgtgtttaaaaccttcatagctatattcatctaatttattttgtgttcgtgtcaaacattgaaccaattgttaagaaaaggtgttaccaaatg  17518500  Previous    Next  AGI:  At4g37230.1    Description:  oxygen-evolving enhancer protein, chloroplast, putative / 33 kDa subunit of oxygen evolving system of photosystem II, putative. similar to OE33/OEE1/OEE33/PSBO-1/PSBO1 (OXYGEN-EVOLVING ENHANCER 33), oxygen evolving/ poly(U) binding [Arabidopsis thaliana] (TAIR:AT5G66570.1); similar to unknown [Populus trichocarpa] (GB:ABK95579.1); similar to unknown [Populus trichocarpa] (GB:ABK95838.1); contains InterPro domain Photosystem II manganese-stabilizing protein PsbO; (InterPro:IPR002628) Range:  from: 17516418    to: 17517581    Orientation: Forward Links:  TAIR  MIPS    AGI:  At4g37235.1    Description:  Identical to UPF0497 membrane protein At4g37235 [Arabidopsis Thaliana] (GB:Q66GI1); similar to integral membrane protein, putative [Arabidopsis thaliana] (TAIR:AT3G50810.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO41610.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN61826.1); contains InterPro domain Protein of unknown function DUF588 (InterPro:IPR006702) Range:  from: 17517979    to: 17519779    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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