Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100           <-------GAMYB --------->WRKY12        ------>ZmHOX2a(2)        <---------MYB46(3) <---------LBD16                                    <---------ANAC46        ==================HOX2a_HOX2a                              <---------ETT(1)        --------->MYB52(2)<-----------------AGL1      <----------DOF2       <---------MYB46(3) -------YAB1       ------>ZmHOX2a(1)         <----------DOF2   --------->WOX13(1)  --------->ETT(2)   accattgggatcgttgccctcctcgtttacccggtttggaccatcttctttcacatcttttaagtcaatccgacccattggtttgtagacacattcaaca  17516000                                                                                                    <                                                                                                    <                                                                                                    <                                                                                               <-----                                                                                               ------                                                                                               ------                                                                                               <-----                                                                                               ------                                                                                          --------->ZAT14                                <---------AHL20(2)                                        --------->ZAT18                               --------->AHL20(2)                                         <---------ZAT18                     <---------TOE1(3)                                                <---------ATHB12                     <---------TOE2(3) <------ZmHOX2a(1)---------->DOF2  ---------->DOF2  <---------ZAT14   ttttgtgtcttcaattcgttttcaaggtttgaattttataaggagcatttgtgtttgagaaagtcttgaatataaaaaagaagtttcaatcgtgcactgc  17516100                                                       <---------AHL20(1)                                                       <---------AHL20(2)                                                  --------->AHL20(2)        >>>>>>>>>ARR2                             ----------->TBP        >>>>>>>>>ARR1                             <---------AHL20(2) ---------ANAC58                     <---------ANAC46  --------->AHL20(2) ---------ANAC58                     <---------ANAC58  --------->AHL20(1) ---------ANAC46                     <---------ANAC58 <---------AHL20(2)    <---------MYB46(3) ----ZAT2                         ----------->HVH21   --------->AHL20(2)--------->ATHB12 --->ZAT2                       --------->ALFIN1----------->TBP       <---------WOX13(1)       <----- --->At4g35610        <---------ANAC58        --------->CCA1(2)       <--------P     --------->WOX13(1) ----At4g35610        <---------ANAC58       --------->ARR11(3)     <---------MYB46(3)  --------->YAB1 --->ZAT14            <---------ANAC46       <---------ARR11(3)  <------------CBF  ------------>CBF   tgacttgtaagattgttttttttttcttgtaaatgtgtgacttgtaagatatataaataaatttgcatattggttgatttgttgaatcaatcttgaatat  17516200                                                                          --------->ANAC58                                                                          --------->ANAC58                                                                        ---------->DOF2                                                                   ------------>CBF                                                                   <---------ATHB12                                                                  ------>MYB83                                                                  ------>MYB46(1)                                                                --------->MYB46(3)                  <---------YAB1                                <---------MYB46(2)                <---------ICU4                                  --------->AtMYB61                --------->YAB1                                  <---------MYB111(1)          <------------CBF                                     --------->ANAC58        <---------YAB1                                         --------->ANAC58        <---------AHL20(2)                              --------->TOE2(3)--------->DAG2    <----------DOF2                             <-----------GT1--------->ANAC46 -------CBF<---------WOX13(1)            <------------CBF    --------->ZAT6  ----------->RAV1(1)   --   tgtagactttttaattgatcatgactaatagttgttttttgaaaattgtttttcatttcattaacaccaaacaataaagcaacacaaatttctatcacct  17516300                                                                                               <-----                                                                                               ------                                                                                              <------                           <---------ARR14(2)                                                 -------                           --------->ARR14(2)                  ---------->DOF2           ----------->RAV1(1)                          <---------CCA1(2)                   <---------WRKY12          --------->ANAC58                    <---------MYB46(3)               --------->WOX13(1)                 --------->ANAC46                  <-------GAMYB                     <---------ICU4                      --------->ANAC58            <---------ANAC55(2)          --------->KAN4(2)  <-----------HVH21         --------->AtMYB61            <---------ANAC58           --------->ARR14(2)  --------->DEAR3(1)         <---------ALFIN1            --------->ANAC55(2)     ----------->GT1<---------YAB1                    --------->ANAC58            <---------ANAC58    ---------->DOF2    --------->ICU4                    --------->ANAC58   <------------CBF<---------MYB52(1)  <---------ARR14(2)<---------At5g28300  --------->MYB52(2)    - ---->ZmHOX2a(1) <---------ANAC46--------->DAG2    <---------ATHB12       --------->MYB111(1) <------   cctagcattgaactacgtgccgttgttcgtatccaaaagtgtatattcttgtaatcattcaccgtcaaagctcaagtagttagtagcaccacaccagatt  17516400                                                                                     <---------ZAT18                                                                                     --------->ZAT14                                                                                     <---------ZAT14                                                                                 --------->ZAT6                                                                                 --------------->AtSPL3                                                                              ----------->HVH21                                                                          --------->ZAT14                                                                          <---------ZAT2                                                                          --------->At4g35610                                                                          <---------ZAT14                                                                          <---------At4g35610       <       ---------->DOF2                                                    --------->ZAT2           -- ----GLK1(1)                                                             ----------->RAV1(1)       <- --->GLK1(1)                                                          <---------ANAC55(2)       ----- ---ARR14(2)                   <---------ALFIN1                       --------->ANAC58--------->ANAC58 -->ARR14(2)                  ------>MYB46(1)                         --------->ANAC46--------->ANAC46 --------->DOF2             <---------MYB59                           --------->ANAC55(2)       <---- ---GLK1(2)    <---------YAB1 ------>MYB83             <----------DOF2--------->ANAC58--------->ANAC58   tccaaagcacaaagctcatgactagccttacctacacactcgatgaaatcgaaggccctttcgaagttgattacgcagcagtgacagtacacaacttcct  17516500           ------->TEIL                    <---------bZIP60(1)         <---------ZAT14                   --------->bZIP60(1)         --------->REM1(2)             <-------PIF5        --------->ALFIN1               ------->PIF5       <---------------AtSPL3      --------->ZAT2                                                   <      <---------ANAC58             <---------At4g35610                                              -      <---------ANAC58             --------->At4g35610                                    --------->MYB46(3)      <---------ANAC46         --------->ANAC46                                          --------->ANAC58 --------->ALFIN1              --------->ANAC58                                          --------->ANAC46 <------NtERF2                 --------->ANAC58       <---------ARR14(2)                 --------->ANAC58 ---------MYB46(3)            --------->WOX13(1)      --------->ARR14(2)          <---------At4g35610 ------->ALFIN1              ---------->DOF2         ============================HOX2a_HOX2a       <- --------ANAC46             ================================HOX2a_HOX2a   <------ZmHOX2a(2)        -- ->ZmHOX2a(1)               <------ZmHOX2a(2)<------NtERF2               --------->ARR14(2)        <- -------RAV1(1)<---------MYB52(1)  <---------ZAT2    <------ZmHOX2a(1)   <---------ARR14(2)        --   ggtggggagcgtgtaccgttcttgttcacgatcaagcagctcgtggcatcgcagaggatactttggtcccaagtcgatcccttcagcattcacccaaggc  17516600         <---------AHL20(2)                   <---------YAB1        --------->AHL20(2)             <---------GLK1(2)              <---------AHL20(2)            - -------MYC3                    --------->At4g35610--------->YAB1    --------->YAB1                <- ------>MYC3                   <---------ARR11(3)  --------->AHL20(2)<---------AHL20(2)            <- --------O2                --------->ANAC46 --------->YAB1           <---------AHL20(1)       <------ ------->TGA1a           --------->ANAC46  <---------YAB1            --------->AHL20(2)       ------- --------TGA1a    ----------->GT1  <---------At4g35610          <---------ATHB12              <------ ------->O2       ------>ZmHOX2a(2)--------->At4g35610        --------->GLK1(1)               -------   cacgttggaaataaatctgatcgtaaaacacaacatctgcagattattatcaataaaaattcagaaatcaataaaattcactctgaaaacgcagaaaatc  17516700                                                                             ---------->DOF2                                                                          --------->MYB52(1)                                                                       <---------At4g35610                                                                  <---------------------WRI1                                                               <---------GLK1(2)        --------->YAB1                                         --------->ARR14(2)       <-------TEIL                                            <---------ARR14(2) ---------->GT1                                               <---------HSFC1(2) --------TOE2(3)  <----------DOF2                             --------->HSFB2a(1)                   - --------TOE1(3) <---------DAG2                          >>>>>>>>>TBF1 --------->At4g35610        <-- ---ARR11(3)  ------->GAMYB            <---------At4g35610    <---------HSFB2a(1)                >>>> -->GLK1(2)<---------ICU4              --------->ZAT2 >>>>>>>>>TBF1 --------->LBD16              >>>> -----ARR10--------->MYB52(1)          --------->At4g35610    --------->HSFC1(2)                 >>>> -->ARR11(3) --------->MYB46(3) <---------ZAT6     >>>>>>>>>TBF1--------->GLK1(2)                >>>>   taaggtaaattcataacgaccttttgaatttctagtgtcgaagctgtattgaagaagaagaagaagattccgaagctaacaaaggagaagacgagagtgg  17516800                                                                                           --------->At4g35610                                                                                           --------->HSFC1(2)                                                                                           <---------HSFB2a(1)                                                                                           <---------HSFC1(2)         ------>ZmHOX2a(1)                                                                 <---------At4g35610  <---------WOX13(1)          <---------ANAC58                                             --------->ZAT2 <---------ANAC58             <---------ANAC58                                             --------->HSFB2a(1) <---------ANAC58        <---------ARR11(3)                                               <---------- -------->ATHB12         --------->ARR11(3)                                   --------->CCA1(2)     < -------WOX13(1)        --------->YAB1               <-------TEIL            <---------ARR11(3)     - >>>>>GATA-2           <---------YAB1               --------->CCA1(2)   ------------>CBF <------ZmHOX2a(1) >>>>>GATA-3         <---------At4g35610           *TSS          <------------CBF      --------->ALFIN1 >>>>>GATA-4         --------->YAB1    <---------ZAT14          --------->ATHB51      <------ZmHOX2a(1) >>>>>GATA-1    ------>ZmHOX2a(1)      --------->ZAT14         <---------YAB1--------->AHL20(1)     <   attgattgctcctctctcctctctgatgatattcgtgcttctacactcacagagatacactgtttattattgttttcaatatatgagaggaggagcttcc  17516900  Previous    Next  AGI:  At4g37220.1    Description:  stress-responsive protein, putative. similar to COR413-PM2 (cold regulated 413 plasma membrane 2) [Arabidopsis thaliana] (TAIR:AT3G50830.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO47687.1); contains InterPro domain Cold acclimation WCOR413 (InterPro:IPR008892) Range:  from: 17515074    to: 17516156    Orientation: Forward Links:  TAIR  MIPS    AGI:  At4g37225.1    Description:  other RNA Range:  from: 17516181    to: 17516851    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At4g37230.1    Description:  oxygen-evolving enhancer protein, chloroplast, putative / 33 kDa subunit of oxygen evolving system of photosystem II, putative. similar to OE33/OEE1/OEE33/PSBO-1/PSBO1 (OXYGEN-EVOLVING ENHANCER 33), oxygen evolving/ poly(U) binding [Arabidopsis thaliana] (TAIR:AT5G66570.1); similar to unknown [Populus trichocarpa] (GB:ABK95579.1); similar to unknown [Populus trichocarpa] (GB:ABK95838.1); contains InterPro domain Photosystem II manganese-stabilizing protein PsbO; (InterPro:IPR002628) Range:  from: 17516418    to: 17517581    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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