Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                           <---------HSFB2a(1)                                                         --------->HSFC1(2)                         -                                                         <---------HSFC1(2)                         <                                             --------->HSFB2a(2)                                    <      --------->ANAC58                       <---------HSFB2a(2)                                    -      --------->ANAC58               ----------->HVH21   --------->HSFB2a(1)              --------->MYB46(3)      ----------->GT1          ------>MYB83  --------->LBD16                             --------->ANAC58   --------->ARR14(2)          ------>MYB46(1)           --------->At4g35610             --------->ANAC58   <---------ARR14(2)         --------->MYB52(1)         <---------At4g35610 --------->ZAT18   ------  <------ZmHOX2a(1)  --------->WOX13(1)     <---------TOE1(1) --------->HSFB2a(2)      <------ZmHOX2a(1) >DOF2--------->ANAC46       --------->AtMYB61  <------ZmHOX2a(1)            <---------ZAT14  <------   gagaggaaacgcaaatacaatgtcaattacaccaacgatgtgacctccgaggagatggaagcttacagaatgaagagagttcaccacgaggacccaatga  17489100         <---------ZAT2        --------->LBD16        ------>NtERF2       --------->ANAC46      <---------LBD16      --------->LBD16              --------------->AGL15 -------->HSFC1(2)              <-----------GT1 ---------HSFB2a(1)      ---------->ID1 ---------HSFC1(2)    <----------DOF2                                        <---------AHL20(2) -------->HSFB2a(1)<---------ARR11(3)      --------->At4g35610               --------->AHL20(2) --->YAB1<---------At4g35610 <----------DOF2                               <----------DOF2 ---ATHB12         --------->ARR11(3)      <---------At4g35610      <-------TEIL               <-----   gaaatttccccggctgataaatgtcttttccctttcaccatattaagctgaagaaaccttgtttttaagtttcatgtctttaaataagacccttgttatt  17489200                                                                 <---------AHL20(2)                                          --------->AHL20(2)     <---------AHL20(1)                                       --------->YAB1           --------->AHL20(2)             <---------At5g28300      <-------TEIL            --------->YAB1     --------->ATHB51             <---------ATHB12      ------->TEIL     --------->ATHB12         --------->MYB46(3)  --------->TOE1(2)     <---------ICU4           <---------MYB55(2)  --------->TOE2(2)    --------->ICU4           --------->ANAC58    <---------ANAC46--------->AHL20(1)              ----    <---------YAB1           --------->ANAC46    <---------ANAC55(2)                             <--- ----YAB1   <-----------GT1  --------->ANAC58   <---------TOE2(3)--------->AHL20(2)      <-----------GT1   catgtcattatttgttactgtcttcatgtccacccaaagattcattatataacgtatgaaactagaataaattttcttagccaaatcaaattaaccatgt  17489300                                                      <---------------AGL15                                                      ------>ZmHOX2a(1)                                                      <----------DOF2                         <------                   <----------DOF2                   --------->TOE2(3)                        -------          --------->ANAC58                       <---------GLK1(1)                 <---------ANAC58          --------->ANAC58               --------->YAB1                            <---------ANAC58     --------->ANAC46                 --------->WOX13(1)               --------->YAB1      ---------- ------->GT1    ------>MYB46(1) --------->MYB59  --------->GLK1(1) --------->MYB52(1)    ---------->DOF2 ------ANAC46   ------>MYB83------->TEIL<---------ATHB12     <----------ID1    <------------CBF   tgtatataaaccacgaccaagctttatatgaattttggtccaatcaaaccgaaatcctttattaagacaaaactgataatgtattgtttgcaaaagagcc  17489400                                <---------AHL20(2)                         <----------DOF2                               --------->AHL20(2)             <-----------GT1 ---ZAT18         ---------->DOF2         <---------AHL20(2) *TSS   --------->ALFIN1<---------AHL20(2) -->ZAT18 <---------AHL20(2)   <---------AHL20(2)      <---------TOE2(3)  <---------ANAC58 >DOF2----------->GT1 ---------->DOF2------------>CBF  <---------TOE1(3)  <---------ANAC58   ctccaaatttgttaaaatgtgaaagaaagctaattaaatatcaatttatctgtgtttaaagttttaacgagagggggcttttgaatttttttgctcaact  17489500            <------NtERF2           ------>NtERF2           --------->LBD16           <---------ATERF1(1)          <---------ATERF1(2)                                                                  <-----          <---------DEAR3(1)                                                                   ------          --------->DEAR3(1)                                                                   <-----          --------->ATERF1(2)                                                           --------->ANAC46         <---------LBD16                                                                --------->ANAC58         <------NtERF2                                                               ------->GAMYB<--         --------->ATERF1(1)                         --------->ANAC58    ============================         --------->RAP2.3(1)                    <---------CCA1(2)        <---------ALFIN1    <-------        <---------RAP2.3(1)                  <---------MYB52(1)          --------->ANAC46------>NtERF2        <---------ATERF1(1)                 <-------GAMYB                ----------->RAV1(1) --------        ------>NtERF2                      <---------DEAR3(2)       <-----------GT1 --------->MYB46(3)       --------->DEAR3(1)                  <---------MYB46(3)      <-----------GT1----------->RAV1(1)       <---------DEAR3(1)                  ----------->GT1     <---------MYB52(1) ===================     <-----------HVH21                    <---------DEAR3(1) <---------ANAC58    --------->MYB46(3)  <---------ARR14(2)                     <---------MYB52(1)  <---------ANAC58  ======================  --------->ARR14(2)                    <-----------HVH21    <---------ANAC46  ----------->RAV1(1)---  <-----------ARR10              <---------GLK1(2)   --------->ANAC58 --------->ANAC46  --------->ANAC58   tccaaatcgtcgccggcgatagaaaccctagatttgattctccgtcggttatatccagcaatgtcgttttttcccccacagcaacaacagacgcctcagc  17489600                                                                       <------NtERF2                                                                      --------->LBD16                                                                      --------->At4g35610                                                                     --------->ANAC46                                                                     ----------->RAV1(1)                                                                     --------->DEAR3(1)                                                                     --------->RAP2.3(2)                                                                     --------->RAP2.6(2)                                      <---------MYB52(2)            --------->RAP2.3(1)                                     --------->At4g35610            --------->ATERF1(1)                                     <---------At4g35610           --------->At4g35610                                  --------->LBD16                  <---------At4g35610 ----At4g35610                   --------->RAP2.6(2)               --------->ZAT2 --->At4g35610                   --------->DEAR3(1)                <---------ATERF1(1) ----ZAT2                        --------->RAP2.3(2)               <---------ZAT2                  -- -------At4g35610              --------->At4g35610                 ------>NtERF2                   -- ====RAV                       <---------At4g35610                --------->DEAR3(1)               -- ----RAV1(2)           <---------MYB52(1)                --------->ANAC58 <---------MYB52(2) -------- -->CDC5        --------->MYB52(1)--------->At4g35610    --------->ANAC58<---------At4g35610 -------- ====RAV     <---------At4g35610 --------->ANAC46        --------->ANAC46--------->At4g35610 -------- ====RAV     --------->At4g35610 ----------->RAV1(1)    <---------HSFB2a(2)                 <-------- ------>At4g35610     <-------GAMYB<------NtERF2        --------->HSFB2a(2)                 ---------   cgctgtttcaaactcagcaaacgtcgttgtttcagccgcagcaaaccaattccatcttctcgcaatcgcagccgcagcaaaccaattccatcttctcgca  17489700                                                                                   ----------->RAV1(1)                                                                                 --------->ZAT2                                                                                 <---------ZAT2                                                                                 <---------At4g35610                                                                                 --------->At4g35610     ------->GAMYB                                                              --------->ANAC46-----     <---------ALFIN1                       ----------->RAV1(1)                <---------HSFB2a(2)     ----------->RAV1(1)                   --------->MYB46(3)       --------->RRTF1(2)        -------     --------->AtMYB61                   ----------->RAV1(1)        --------->ANAC58        ---------    --------->MYB46(3)                 --------->At4g35610          --------->ANAC58--------->ZAT2   -------->P                       --------->LBD16                 --------->RAP2.3(2)  --------->RAP2.6(2) ------->ANAC58                    --------->ANAC46                 --------->ANAC46<---------At4g35610 ------->YAB1                      ------->GAMYB                  <---------At4g35610  --------->ZAT2 ------->ANAC58                   --------->MYB46(3)      <---------MYB52(1)   --------->HSFB2a(2) ->ANAC58                    --------->ANAC46            <-------GAMYB ----------->RAV1(1)--------->At4g35610 ->ANAC58--------->At4g35610 --------->ANAC58      --------->MYB52(1)--------->LBD16--------->At4g35610 ->ANAC46<---------At4g35610 --------->ANAC58    <---------MYB52(2) --------->RAP2.6(2)--------->At4g35610 -HSFB2a(2)                 --------->HSFB2a(2) --------->At4g35610--------->RAP2.3(1) <---------At4g35610 >HSFB2a(2)                 <---------HSFB2a(2)------->GAMYB      --------->At4g35610 ----------->RAV1(1)   atcgcaaccacagcaaaccaattccatcttctcgcaaccgcagcaacaacagcaaacgtcgttgtttcagccgcaacagttccagcagcagcagcaacag  17489800              <---------At4g35610                             --------->LBD16              --------->ZAT2                                  ------>NtERF2                         -              --------->At4g35610                           <---------LBD16                         <           --------->At4g35610                         --------->DAG2                     ------>ZmHOX2a(2)          ------->GAMYB                               ---------->DOF2                   --------->ARR11(3)         --------->MYB46(3)                        --------->TOE2(3)                    <---------ARR11(3)       ----------->RAV1(1)                         --------->YAB1                       <---------ARR14(2)     --------->At4g35610                         ------>MYB46(1)                  --------->ZAT18   <    --------->ANAC46        ----------->RAV1(1)  ------>MYB83<---------DEAR3(1)  --------->ALFIN1 --- ---->At4g35610            --------->MYB46(3)   --------->MYB52(1)     --------->ZAT6   --------->ARR14(2) -->MYB46(3) ----------->RAV1(1)               --------->DEAR3(1)     <---------At5g28300<------ZmHOX2a(2) -->RAV1(1)<---------At4g35610                --------->MYB46(3)     <-----------GT1  ----------->ARR10   ctaaatcagcaacagcagcagcaagtacaacaacagttgtatttgttcaccaacgataaagctccggcgaattacagtactaagtgggccgatcttcatc  17489900                                                                                                <----                                                                                         <---------ANAC58        <---------GLK1(2)                                                                <---------ANAC58 -------->ARR14(2)                                                                <----------DOF2 ---------GLK1(2)<---------ANAC58                             <----------DOF2    <---------ANAC58 ---------ARR14(2)         <---------ANAC46  --------->ANAC46 <---------DAG2     <---------ANAC58 ------>LBD16    <---------ANAC58 <----------DOF2     <-------TEIL           <----------DOF2  <------   ccgattctcagaaactcttgcttcagattgagtatgcttttacttaaacgcctaaattcgtttcctttttctccataggctttgctttagtgcttactgt  17490000  Previous    Next  AGI:  At4g37120.1    Description:  SMP2 (swellmap 2). Identical to Pre-mRNA-splicing factor SLU7-B [Arabidopsis Thaliana] (GB:O23174;GB:Q93ZP2); similar to SMP1 (swellmap 1), nucleic acid binding [Arabidopsis thaliana] (TAIR:AT1G65660.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO71409.1); similar to predicted protein [Physcomitrella patens subsp. patens] (GB:EDQ79297.1); similar to hypothetical protein OsI_026691 [Oryza sativa (indica cultivar-group)] (GB:EAZ05459.1); contains InterPro domain Zinc finger, CCHC-type; (InterPro:IPR001878) Range:  from: 17486641    to: 17489288    Orientation: Forward Links:  TAIR  MIPS    AGI:  At4g37130.1    Description:  hydroxyproline-rich glycoprotein family protein. similar to unnamed protein product [Vitis vinifera] (GB:CAO43571.1); contains domain PTHR23245:SF26 (PTHR23245:SF26); contains domain PTHR23245 (PTHR23245) Range:  from: 17489461    to: 17492004    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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