Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                               <-------GAMYB                            <---------MYB46(3)                            <-----------RAV1(1)                         ------>NtERF2                        ----------->HVH21       <---------ANAC46                      ------>ZmHOX2a(1)      ----------->TGA1 --------ARR14(2)  ------>ZmHOX2a(1)         ----------->HVH21                     --------->ANAC58 --HSFB2a(2)   <---------ARR14(2)     <---------TOE1(3)                            --------->ANAC58 ->HSFB2a(2)   --------->ARR14(2)     <---------TOE2(3)    --------->HSFB2a(1) <---------ALFIN1  <---   agatcgagacgtttgagtttcctcctccgactgttggattagggtttgtgacgggaatcgaacatttcgctctcgttctcaccacaggcattgtgagaga  17486200                                                                                             <-------                                                        <---------LBD16                      <-------                                                     <---------GLK1(1)                    <----------                                                     --------->GLK1(1)                   <-----------GT1                                                    --------->ARR11(3)             <---------AHL20(2)                                                    <---------ARR11(3)           <---------CCA1(1)                                                    <---------AGP1              <---------GLK1(2)                              <---------ICU4       <---------CCA1(2)  *TSS      --------->ARR11(3)     <-----------------AGL3  <---------ATHB12  <----------DOF2      >>>>>>>>>TBF1<---------RVE1(1) ------WOX13(1)    ---------->DOF2     <----------DOF2------>ZmHOX2a(2)         <---------ARR11(3)   ttgatgaactgattttggattcaaagttccaatctttccctctttctctctttggatctctggataagaagaagaaatgaaagatttttttttaactttt  17486300                                                                        <---------TOE2(3)                                                                        <---------TOE1(3)                                                                        --------->MYB59                                                                   <----------DOF2                                                                  <---------DAG2                   --------->MYB52(1)                             <---------------AGL15              ---------->DOF2                                     --------------->AGL15             <---------ARR14(2)                                  <-----------------AG             --------->ARR14(2)                                  <-----------------AGL1 ---DOF2 <---------At4g35610                                     ----------------->AGL1         ----- --DAG2  --------->At4g35610            <----------DOF2        <-----------GT1                  <---- -GT1 <---------ZAT14 ------->GAMYB<-----------GT1           <-----------GT1        <----------DOF2<-   taagtgagtgaagcggaacagcaacggtctggtttttttactctttttaaaattcaaaacatttttcacctttttaggtaaatgtgcttaatttgccaac  17486400            <---------WOX13(1)                                            ---------->DOF2         ---          --------->ATHB12                   --------->WOX13(1)     <<<<<<<<<<GT-3b            ------          <---------MYB46(3)          <---------AHL20(2)        <---------AHL20(2)             <-----         <---------YAB1              --------->AHL20(2)         --------->AHL20(2)             <-----       --------->TOE2(3)             --------->ICU4            <---------AHL20(1)           --------- --------->YAB1                    <---------ICU4              --------->AHL20(1)  <---------MYB52(1) ---->MYB46(3)<------MYB46(1)   --------->YAB1                 --------->AHL20(2) <----------DOF2---- -----MYB52(2)<------MYB83   --------->GLK1(1)          ----------->GT1--------->TOE2(3) <----------DOF2 --------TOE2(3)             <---------GLK1(1)  --------->YAB1 <---------AHL20(2)<----------DOF2-----   taatgaaaacgttgattggtttgtcaaatggaaatcatatttattatctatcatacatctgtaaatttatttttcttaaagggcctttaggctttaataa  17486500                                                                                                <----                                                                                               ------                                                                                        <---------AHL20(2)                                                                                       --------->AHL20(2)                                           <------NtERF2                               --------->AHL20(1)                                          <---------RAP2.6(3)                          <---------AHL20(1)                                          ------>NtERF2                                <---------ARR11(3)                                         --------->RAP2.6(2)                  <---------ANAC55(2)   <                                         --------->DEAR3(1)                   --------->ANAC58 <-----                                         --------->RAP2.3(2)                  --------->ANAC58 ------                                         --------->RAP2.3(3)                  --------->ANAC55(2)---- ---->GAMYB                              --------->ANAC46            ================================ --->MYB52(1)                           --------->RAP2.3(1)          ================================ ----ICU4                              --------->At4g35610           --------->LBD16   --------->ARR11(3) ------GT1                            --------->ANAC46               ------>ZmHOX2a(1) <---------AHL20(2) >YAB1                             <---------KAN4(2)   <----------DOF2     <---------ARR14(2)  <----- ----->MYB46(3)                   --------->YAB1    <---------ARR11(3)     --------->ARR14(2) <------ ---->RAP2.6(3)                >>>>>>>>>TBF1     <----------DOF2    <---------LBD16 --------->AHL20(2)   cggcccataaaaaatcccaaattgtactacgaagaagaataagccgccattctttatctttccattccttcctggagattacgcattaatatatttagat  17486600                                                                                <----------DOF2                                                                    <---------ICU4                                                                    <------------ATHB5                                                                    --------->YAB1                                                                   <---------ATHB12                                                           ------>ZmHOX2a(2)    <-----------HVH21                                                           ----------->GT1 --------->ATERF1(1) --ZmHOX2a(2)                                              --------->YAB1 <---------ATERF1(1) --->AGP1                              ==========================HOX2a_HOX2a<---------DEAR3(1) ---------TOE1(2)                      ===========================HOX2a_HOX2a------>NtERF2 ----AGP1                              ------>ZmHOX2a(1)  <------ZmHOX2a(2)<------NtERF2 --->ARR11(3)                       <-----------GT1     ------->GAMYB     ------>NtERF2 -->ZmHOX2a(2)             <---------DAG2*TSS          --------->MYB46(3)--------->ETT(2)   <-------- ===HOX2a_HOX2a            <----------DOF2           --------->MYB52(1)  <---------DEAR3(1)<---------YAB1 ==HOX2a_HOX2a           <---------TOE1(2)  --------->HSFB2a(2)  --------->WOX13(1)        --------->ICU4 ----ARR11(3)        --------------->AtSPL8 <---------HSFB2a(2) --------->MYB46(3)  <---------At4g35610 ---CCA1(2)     <----------DOF2    <-----------GT1--------->TOE1(3)--------->ICU4 <-----------RAV1(2)   cttaggtcttattagcttctttattcgcacttttttttttcctctactcgaagcttaacgatcgtaacaatcatggcgacggcttcaggtaccatgattc  17486700                                                                                 --------->ARR11(3)                                                                   --------->GLK1(2)            -----                           ------>MYB46(1)                 --------->ATHB12     <---------GLK1(1)                           ------>MYB83                   <---------YAB1        --------->GLK1(1)                   --------->TOE2(3)                      --------->ICU4        <---------CCA1(2)                   <----------DOF2  <---------GLK1(1) <---------MYB52(1)   <---------At4g35610<------    <---------ARR11(3)   --------->TOE2(3)           <-------GAMYB<---------GLK1(2)       <----------DOF2 -ICU4  <<<<<<<<<TBF1    <---------MYB59    <---------MYB52(1)  <---------TOE2(3)<---------ARR11(3)   cttcaatttcttcttctaatactttaacctaattctcgatttctctgttaattcccgttgatgattaagaatctcgcttctgatatcttcttctttcttt  17486800                   <---------TOE2(3)             <---------AHL20(2)                                                             ---------     --------->AHL20(1)                                                                   <---------TOE2(3)     <---------ARR11(3)                                                                 <---------AHL20(2)     --------->AHL20(2)                                                                <---------YAB1     <---------AHL20(1)                                                             <---------YAB1 ---->AHL20(2)     <---------TOE1(3)                                             --------->AHL20(2) ----DOF2 ----------->GT1 <-----------GT1         <-------TEIL  --------->GLK1(2)<---------AHL20(2)<-   aaatctatatattagtaaattagggtttttactagttttgctattggctagattcattttggctaaattctggcaaaattgattttatttttaatgtttg  17486900                                       <----------DOF2                                      <---------ANAC46                                      <---------ANAC58                                      <---------ANAC58                                   <---------MYB52(1)                                  <-------GAMYB                                  <---------At4g35610                             ------>ZmHOX2a(2)                            --------->GLK1(1)                            <---------At4g35610                        --------->YAB1                            <------ZmHOX2a(2)            <------ZmHOX2a(2)                  ---------                            --------->At4g35610          =============HOX2a_HOX2a          ----------                           --------->ARR14(2)            ================================HOX2a_HOX2a       <---------YAB1      <---------ARR14(2)           <---------ARR11(3)           <---------ZAT2 >ATHB12                   --------->ARR11(3)           --------->ARR11(3)           <---------At4g35610 ----------RAV1(1)         <---------ARR11(3)--------->ZAT6    <------ZmHOX2a(1)  <------ZmHOX2a(1)   aatgttgttctgatatatgttttctatgggatctgcagttgcttttaagtctagggaagatcacaggaagaaattagaattagaggaagctcgtaaagct  17487000                   <---------------------WRI1             <---------AtMYB61             <---------TOE2(3)          <----------CDC5         ----------->RAV1(2)         --------->ZAT2                                                                            <-         <---------ZAT2                            ----------->RAV1(2)                            ---         --------->At4g35610                ------>ZmHOX2a(1)     ---------->DOF2                 <--         <---------At4g35610           --------->WOX13(1) <---------ARR14(2)                     ---- >DAG2  ------>ZmHOX2a(1)            <---------ATHB12     --------->ARR14(2)                 -------- >DOF2----------->RAV1(2)     ---------->DOF2     --------->MYB52(1)                      <---------ZAT14   ggtctcgctcctgctgaggtagacgaagatggcaaagaaatcaatcctcacatacctgagtatatgtcaaaagctccatggtatctcaagtctgaacagc  17487100  Previous    Next  AGI:  At4g37110.1    Description:  protein binding / zinc ion binding. similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G23530.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO44617.1); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) Range:  from: 17484119    to: 17486270    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At4g37120.1    Description:  SMP2 (swellmap 2). Identical to Pre-mRNA-splicing factor SLU7-B [Arabidopsis Thaliana] (GB:O23174;GB:Q93ZP2); similar to SMP1 (swellmap 1), nucleic acid binding [Arabidopsis thaliana] (TAIR:AT1G65660.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO71409.1); similar to predicted protein [Physcomitrella patens subsp. patens] (GB:EDQ79297.1); similar to hypothetical protein OsI_026691 [Oryza sativa (indica cultivar-group)] (GB:EAZ05459.1); contains InterPro domain Zinc finger, CCHC-type; (InterPro:IPR001878) Range:  from: 17486641    to: 17489288    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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