Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                 <---------ANAC58                                                               <---------ANAC58                                    --------->ZAT2        --------->ALFIN1                            <---------ARR11(3)          --------->O2                            --------->ARR11(3)          <---------O2              ------>MYB83 --------->GLK1(1)            <---------TGA1a              --------->ANAC46      <---------ZAT2 <---------ETT(2)----------->HVH21              --------->ANAC58    ------->GAMYB    <-----------------AGL1   ----------->GT1   <-----------HVH21             --------->ZAT18<-----------HVH21                 < ------->YAB1 --------->ANAC58    ================================MYC_MYB                       <---- ----->AHL20(2)   --------->At4g35610    ----------->GT1--------->TGA1a <---------ANAC55(2)  <------- -----DOF2    ------>MYB46(1)<------ZmHOX2a(2)     ----------------->AGL1      ------->TEIL ---------   ttaataagttaaaaccaagcagttgtcagagatcaacgagctcgtgtaaaatgtccacaagtgggacttgtgacccgtatgcattttttatgccattttt  17343000                                              --------->ANAC55(2)                                              --------->ANAC58                                              --------->ANAC58                                              --------->ANAC46                                              <---------ANAC55(2)                                         --------->ZAT6                                         <---------ICU4                                        <---------ATHB12                                      --------->YAB1                                   --------->TOE2(3)                                  --------->YAB1                                  <---------ICU4     <---------ANAC55(1)          --------->ATHB12     <---------ANAC58             <--------HAHB4     <---------ANAC58            <---------YAB1     <---------ANAC46            <---------ATHB12     --------->At4g35610       --------->AHL20(2) ---------ICU4               --------->ARR11(3)      <XXXXXXXXXXXXXXXXXXXXXMIR777 -------GT1                  <---------ARR11(3)     --------->YAB1         ----------->GT1 --ICU4             --------->ANAC46<---------YAB1 <---------ATHB12   <---------ANAC46   --------->At4g35610 >ICU4         --------->ARR14(2)--------->ICU4    --------->ICU4  --------->ALFIN1  --------->MYB52(1)   actaatttcgtgtaacaaatctacaaaacaagataatcattaatcactacgtaatcatctaaattcaatgtgtggtatagaaaaaaataacagatgagat  17343100                                                                                               ------                                                                                               ------                                                                               --------->ARR11(3)                      <-----------GT1      <---------AHL20(2)                  --------->GLK1(2)              <---------YAB1              --------->ARR11(3)                   <---------ARR11(3)----          --------->ARR11(3)              <---------ARR11(3)           <----------ID1          <-----          <---------GLK1(2)               <---------AHL20(1)           ----------->GT1         ------          <---------ARR11(3)         ----------->GT1                 ---------->DOF2           ------        <---------TOE2(3)         --------->YAB1                  --------->AHL20(2)      -----------        <---------TOE1(3)      ----------->RAV1(1)          ----------->GT1   --------->RVE1(1)------   ttatgtgtttaagattttgatattttaccaaaacaacaatagtatatatttgtggtatagaattgaaaataaaaagaaaaaaatctaaaaaactgacaag  17343200 <---------AHL20(2) --->ANAC58                --------->ARR11(3) --->ANAC58                <---------ARR11(3) ----->AHL20(2)           --------->RVE1(1)                                                  <------- ----ANAC55(2)            --------->CCA1(1)                                                  -------- ----->GT1         ----------->GT1         --------->YAB1                             ----------->GT1 --->ANAC55(1) --------->ANAC46  <----------DOF2                   ------------------------>ANAC81--- >HVH21        --------->ANAC58 <---------ICU4              ------->TEIL            ----------->GT1 --->ANAC55(2) --------->ANAC58<---------YAB1          <---------AtLEC2  --------->AHL20(2)----------   taatttatctgtaatctaagccagaaaaatatcatctttatgctataaaaacattttccatggacttaaaaacaataaaacaaaaacagtgaaaaaagaa  17343300                                      --------->AtMYB61                                     --------->MYB46(3)                                   --------->ANAC46                           <-----------HVH21                          ------>ZmHOX2a(2)                        <---------ARR14(2)                        <---------ARR11(3)                            --------->ARR14(2)                        --------->ARR14(3)                            <---------ARR14(2)                        <---------ARR14(3)                         ------->GAMYB                --------->DAG2     <---------ALFIN1          --------->ZAT6     <---------ANAC58   --------->ARR11(3)               --------->LBD16                       <-----     <---------ANAC58   --------->ARR14(2)              <---------ANAC58                   --------->ZAT6 ---ID1        ---------->DOF2 --------->At4g35610      <---------ANAC55(2)           <---------GLK1(2) --->GT1 ------------>CBF<------ZmHOX2a(2)              <---------ANAC58            <---------TOE1(2) ------->DOF2 --------->YAB1   <---------At4g35610      --------->ANAC55(2)   *TSS ------>ZmHOX2a(1) >DOF2<----------DOF2 ----------->ARR10 <---------MYB52(2) --------->SPL7  <---------MYB52(1)  ------   aaaagatgcttttcaataaaagtgaagatcgtcatctccaccactaacaaggcccattccgtaacacaaccctatctgttacttcctagcttctcactaa  17343400                               <---------ZAT14                        <---------ICU4                       --------->ICU4                     --------->AHL20(2)       <---------CCA1(2)  --------->WOX13(1) <---------ICU4<----------DOF2        <---------AHL20(2)<---------GLK1(2) ----ICU4  <-----------GT1 <-----------GT1   <----------ID1               <---------AHL20(2)       -- --->MYB52(1)     --------->YAB1<---------ALFIN1      --------->AHL20(2)  --------->AHL20(2)       <-   tggccaatccaattctccattcataattttgactccactttccaaaaaaaacaaaaaaaaataaatactaatataaaaaattctcaaatctaaaatttca  17343500                                                                                                 <---                                                                                                 ====                                                                                                -----                                                                                                <----                                                                                                -----                                                                                                -----                                                                  <---------YAB1          --------->ARR14(2)                                                                <---------ICU4            <---------ARR14(2)                                                                --------->YAB1           ------>MYB46(1)                                                               <---------YAB1            ------>MYB83                                                             --------->YAB1            <---------MYB59                                                             <---------ICU4           ---------------                                                       --------->AtMYB61              ---------------                   xxxxxxxxxxxxxxxx>smallRNA(s)      ----------->RAV1(1)              ---------------                   <---------ZAT14                  <---------ALFIN1               ==================                  <----------DOF2                   --------->ANAC46               ==================      --------->GLK1(1)                             --------->AtMYB61              ================== ------->GLK1(1) <---------ANAC58         <---------MYB46(3)<---------ATHB12       ------>ZmHOX2a(1) --------GLK1(1) <---------ANAC58 <-------TEIL     --------->MYB46(3)            <---------ICU4 <----   gatttcagaaatcgccatggcttcagtgactctaggttcatggattgttgttcaccaccacaatcatcatcatccatcttcaatccttaccaaatccaga  17343600    ==============HOX2a_HOX2a    ------>ZmHOX2a(2)   <------ZmHOX2a(2)   ===============HOX2a_HOX2a  --------->AGP1  <---------ARR14(3)  --------->ARR11(3)  <---------ARR14(2)  --------->ARR14(3)  --------->ARR14(2)  <---------ARR11(3)  <---------AGP1  <-----------ARR10 <---------CCA1(2) ---ZmHOX2a(2) =================HOX2a_HOX2a ---->AGP1 -----ARR14(2) ---->ARR11(3) ---->ARR14(2)                                         <---------MYB52(1) -->AGL3                                         <---------ABI4(2) -->AG     ------>ZmHOX2a(1)                    --------->ANAC46 -->AGL2---------->ID1                          --------->ANAC58 ==========HOX2a_HOX2a                          --------->ANAC58                        <---------MYB52(1) ===HOX2a_HOX2a                            --------->YAB1 --------->YAB1               <-------GAMYB =========HOX2a_HOX2a                     <------ZmHOX2a(2)                      <<<<<<<<<TBF1  ----- -----ARR11(3)                      <----------DOF2------->TEIL          <---------ATHB12<---------MYB46(3)   tccagatcttgtcctataactcttactaaacccatctcctttcgatcaaaacgcaccgtttcatcatcttcttcaatcgtttcttcttccgttgttacaa  17343700                  --------->YAB1                --------->ARR14(2)                         ---------->DOF2                --------->GLK1(2)                         --------->AtMYB61                <---------ARR14(2)                  <---------ICU4                                  -               --------->WOX13(1)            <---------ANAC58                                 <------            ------>NtERF2 ------>MYB46(1)    <---------ANAC58                               <--------           --------->ANAC58                  <---------ANAC46                             <----------           --------->ANAC58    <----------DOF2  --------->SPL7                           <-------TEIL      --------->GLK1(2)   ------>MYB83      --------------->AtSPL8                <----------DOF2   =      <-----------ARR10--------->MYB46(3)   --------------->AtSPL3           ---------->DOF2<-------- ----->DOF2--------->ANAC46  ------>ZmHOX2a(1)<---------SPL7             <---------WRKY38(1)---------   aagaagacaatctacgccaatctgaaccatcctctttcgatttcatgtcgtacatcatcaccaaagccgaattagtcaacaaagctttagattcagctgt  17343800                    --------->CCA1(2)                   <---------ARR11(3)                   --------->AGP1   <---------MYB52(1)                   --------->ARR14(2)     --------->LBD16<------ZmHOX2a(2)     <-----------HVH21   ---------->DOF2                   ---------->DOF2 ----->ZmHOX2a(1)  --------->ARR11(3)                   <------NtERF2                         ------- ---MYB46(3)       <---------ARR14(2)                  ------>NtERF2                     <---------ANAC58 -ZAT2<---------MYB52(1)--------->ANAC46             <---------MYB52(1)                  <---------ANAC58 -RAV1(2)     <---------ATHB12    <---------ANAC58  <---------DEAR3(2)                   <---------ANAC46 ==========================HOX2a_HOX2a              <---------ATERF1(1)          <---------AtLEC2   < -At4g35610  --------->ANAC58     <---------ANAC58 <---------ATERF1(2)     <---------ZAT14    ------- >At4g35610  --------->ANAC58    <-------TEIL      <---------DEAR3(1)      --------->ZAT14    <------   tcctctccgtgagccactcaagatccacgaagcgatgcgttactctcttctcgccggtggcaaaagagttagaccagttctctgcatcgctgcttgtgaa  17343900  Previous    Next  AGI:  At4g36810.1    Description:  GGPS1 (GERANYLGERANYL PYROPHOSPHATE SYNTHASE 1); farnesyltranstransferase. Identical to Geranylgeranyl pyrophosphate synthetase 1, chloroplast precursor (GGPS1) [Arabidopsis Thaliana] (GB:P34802;GB:O23201); similar to geranylgeranyl pyrophosphate synthase, putative / GGPP synthetase, putative / farnesyltranstransferase, putative [Arabidopsis thaliana] (TAIR:AT2G18620.1); similar to Geranylgeranyl pyrophosphate synthetase, chloroplast/chromoplast precursor (GGPP synthetase) (GGPS) [Includes: Dimethylallyltranstransferase ; Geranyltranstransferase ; Farnesyltranstransferase ] (GB:Q43133); contains InterPro domain Polyprenyl synthetase; (InterP Range:  from: 17343378    to: 17344869    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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