Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                              <------NtERF2                                                           ------>NtERF2                                                           --------->LBD16                                                          --------->LBD16                                                         <---------LBD16                                                         <------NtERF2                                                         --------->ATERF1(1)                                                        --------->ABI4(1)                                                        <---------ATERF1(1)                                                        ------>NtERF2                                                       --------->RRTF1(2)                                                       --------->RAP2.3(3)             <------ZmHOX2a(1)                         --------->RRTF1(3)          <-----------RAV1(2)                          --------->DEAR3(1)       ----------->HVH21                               <---------DEAR3(1)     --------->At4g35610                               --------->RAP2.3(2)     <---------At4g35610                               <---------ATERF1(2)     <------NtERF2                                     --------->ATERF1(2)     --------->ZAT2                                   --------->RAP2.6(1)     --------->ATERF1(1)                              <------NtERF2     <-------GAMYB                                    --------->ATERF1(1)     <---------ZAT2                                   --------->DEAR4(2)    <---------ERF1                                    --------->RRTF1(1)    <---------MYB46(3)                <---------ANAC58--------->ORA47(2)    <---------DEAR3(2)                <---------ANAC46--------->DEAR3(2)    <---------RAP2.3(1)          <---------ANAC58    ------>NtERF2 ------>NtERF2    <---------ATERF1(1)          <---------bZIP60(2) <---------RRTF1(1)                     ------>NtERF2    ------>NtERF2   --------->MYB52(1)>>>>>>>>>>E2Fa <---------ATERF1(1)        --------->ANAC58   <---------DEAR3(1)--------->DEAR3(2)--------->LBD16--------->RAP2.3(1)       --------->ANAC58   <---------RAP2.3(3)           <---------ANAC58   --------->ANAC46          ---------->DOF2  <-----   <---------RAP2.6(2) --------->LBD16<---------ANAC58--------->ERF1   <---------ARR14(2)  --------->DREB2C(2)   <---------RAP2.3(2)--------->DEAR3(1)<------NtERF2<---------RAP2.3(1) ---------->DOF2   --------->DEAR3(1) ------>MYB52(1)   <---------ALFIN1  <---------LBD16<---------RAP2.3(2)--------->ARR14(2) --------->ORA47(2)   aaacggcggctgacaggagacacaccggcgaaatgacttggcgggaagcgttttgcgccgccgggatgaggccgatacagcaaagccagttcgccgactt  17307400                                                    <----------ID1                                                    --------->ANAC58                                              <------NtERF2                                            --------->ALFIN1                                           ------->MYC2                                           <-------PIF5                                           ------->MYC4                          --------->ANAC58                                           ------->PIF5                          --------->ANAC58                                           <-------MYC2                        <---------ANAC46                                           <-------MYC4                        <---------AtLEC2                                          --------->ANAC46                     <---------ANAC58                                          <---------TGA1a                      <---------ANAC58                                          --------->TGA1a                     <------NtERF2                                          --------->PIF3(3)                  ------>NtERF2                                          --------->O2                      <---------ATERF1(2)                                          <---------PIF3(3)                 --------->ATERF1(2)                                          >>>>>>>>>>HY5                   <---------ZAT2                                          <---------O2                    --------->ZAT2           --------->ATHB12           ----------------->PIF3(1)           --------->At4g35610     <---------ANAC46               <---------ARR14(2)                    <---------At4g35610 --------->ZAT2    =================================bZIP_DOF           <---------ANAC46 <---------ZAT2    ---------->DOF2  --------->ARR14(2)                <-----------------------TaNAC69(2) <---------At4g35610       --------->ANAC58------->MYC3              <---------At4g35610--------->ZAT18 --------->At4g35610--------->DAG2 <------ZmHOX2a(1)--------->ANAC58 <---------ZAT14    <---------ZAT18 -----DOF2<---------YAB1   --------->ANAC58<-------MYC3    --------->YAB1--------->ALFIN1          --   tcaagctgagtgtttattggagaaagcgcaagttagaggattccacgtggcgaaacgacaaggagaattggtgctgtgctggcatggaagagcacttgtt  17307500              <-------GAMYB            <---------DEAR3(1)            <---------RAP2.6(2)            <---------ANAC46      <---------ZAT2      --------->At4g35610               ------------>CBF                <---------At5g28300      --------->ZAT2                   <-----------GT1                 <-----------GT1  <XXXXXXXXXXXXXXXXXXXXXMIR167D   <------MYB46(1)              <------------CBF --------->REM1(1)                <------MYB83                <--------ATHB1                      <-- --------->bZIP60(2)              ----------->GT1             --------->YAB1        --------->ARR11(3) =====================MYC_MYB    <---------AtMYB61            <---------ICU4        <---------ARR11(3) --------->TGA1a            --------->LBD16                   --------->ATHB51     --------->RVE1(1) --------->O2<---------MYB46(3)  --------->MYB59             <---------YAB1   <----------DOF2 <------ --------->RAV1(1)        <---------LBD16     <---------YAB1 --------->ICU4------>NtERF2 <----------DOF2   gccacatcagcttggcggttttagataaaccgggtttggtttaacaatatgatatagaatagaataattgtatttaccgcctttaatatctcttttcttt  17307600                                                                                <---------GLK1(2)                                                                                <---------ICU4                                                                             --------->YAB1                                                                         -------->HAHB4                                                                         <--------ATHB1                             <---------ARR11(3)                          --------->ATHB12                             --------->ARR11(3)                         --------->ICU4                             <---------AHL20(1)                         <---------ATHB12                             --------->AHL20(1)                         <---------YAB1                          --------->AHL20(2)                           <---------TOE2(3)                   ----------->GT1                                    --------->YAB1     <---------CCA1(2)   --------->YAB1                           <----------DOF2      ------>ZmHOX2a(1) ---------GT1    ---------->DOF2   <---------ANAC58               =================================== ----DOF2       --------->AHL20(2) <---------ANAC58      --------->At4g35610<-------TEIL   ttgctgtttatctttcaaataaagaaataaaaatatttcttacgaagagtctctgtatgagctagagtcttttaatgattcataatctcctctattcaaa  17307700                                                                     <----------CDC5                                                                   --------->DEAR3(1)         <----------DOF2                                      --------->ARR14(2)        <---------DAG2                                        ------->TEIL    ----------->HVH21                                     <---------TOE1(2)  --------->O2         --------->ZAT18      <------MYB83<---------SPL7                     --------->GLK1(2)  <---------TGA1a <---------ANAC58          ----------->GT1--------->ANAC58               <---------GLK1(2)  <---------O2    <---------ANAC46          <------MYB46(1)--------->ANAC58       <---------ANAC58  ==================bZIP_DOF         ------------>CBF--------------------->WRI1   <---------ANAC58  --------->TGA1a <---------ANAC58---------->ID1     <-----------HVH21       <---------ARR14(2) ===========bZIP_DOF  --------->ALFIN1     --------->MYB59--------->SPL7     --------->ARR14(2)   acacaagtgaccttttttttgcgagtgtgcgagttcgtcgtcaatttggtaaaaccgtcgtacgaatcgccgatgagcgggtttgcttcacagattccat  17307800                                                                                                   --                                                                                                   <-                                                                                       <---------ANAC58                                                                                       <---------ANAC55(1)                                                                                       --------->ANAC55(2)                                                                     --------->SPL7    <---------ANAC58                         --------->DEAR3(1)                         <<<<<<<<<SPL5      <---------ANAC46                       --------->MYB52(1)                           <<<<<<<<<SPL4     ------>ZmHOX2a(2)               ------>ZmHOX2a(2)                                    <<<<<<<<<SPL1    <------ZmHOX2a(2)             --------->ARR14(2)                                  <---------------AtSPL3<---------ANAC55(2)             <---------AGP1                            <---------TOE2(3)  <----------DOF2 --------->ATHB12             <---------ARR14(2)                     <---------WOX13(1)<---------RAP2.6(2)<---------MYB52(1)             --------->ARR11(3)                   --------->ATHB12 <---------SPL7   --------->ARR14(2)            <---------CCA1(2)                    <---------YAB1 <------------------SPL14--------->LBD16        <---------ANAC46--------->DEAR3(2) <---------MYB52(1) <---------YAB1        <---------ARR14(2)      <----------DOF2----------->HVH21    <----------DOF2----------------------->TaNAC69(2)    <-----   ccatggcgcttcttggatctggactcaccggcgaggtaatcttcctttagtttgattgatgtttccgattgtacggcttttgttccgatccgtgatttgg  17307900         --------->DAG2        ---------->DOF2  <---------ANAC58  ----------->GT1  <---------ANAC58  <---------ANAC55(2)        ------->TEIL  --------->ANAC55(2)<---------AHL20(2) <-----------------------TaNAC69(2)                    <---------ANAC46        --------->ZAT14 <-------TEIL       <---------AHL20(2)            --------->At4g35610          <---------ZAT14 ------->ARR14(2)   --------->AHL20(2)       --------->REM1(1)  <---------GLK1(1) --------ARR14(2)--------->ATHB12    <------ZmHOX2a(1) <---------ANAC58<---------GLK1(1) ----LBD16      <---------YAB1     <---------TOE2(3)   <---------ANAC58--------->GLK1(1)   ggattcgtgataaagtttatgattaaatatgtatatttaggattccttcatcttctgccttgttggaattcagatttcttctgtactggattgttttttt  17308000                                                                        <---------DAG2                                                               --------->KAN4(2)                                                              <----------TaMYB80                                                              <---------GLK1(1)                                                             --------->ARR11(3)                                                             <---------ARR14(2)                                                             --------->ARR14(2)                 ---------->DOF2      --------->ALFIN1       <---------ARR11(3)          <----------DOF2      ---------->DOF2    ------>ZmHOX2a(1)     <----------DOF2   gtttggattactctttgacaaaagccgattagagaaagaggtgtttcaattcctgatcatgtggatattctcaacttttggattgagagaaacaattgtt  17308100                          <---------ANAC55(2)                          <---------ANAC55(1)                          <---------ANAC46                          <---------ANAC58                          <---------ANAC58                       <--------P                      <-------GAMYB                      <---------ANAC58                      <---------ANAC58                     <---------ANAC58                     <---------ANAC58                     <------MYB83                     <------MYB46(1)                    <------MYB83                                    --------->SPL7                    <------MYB46(1)                               <---------SPL7                    <---------MYB46(3)                   --------------->AtSPL8                  <--------P                             <---------------AtSPL8                 -----               <---------TOE1(3)                         --------------->AtSPL3                ------               <---------TOE2(3)                        <---------ARR11(3)             <---------YAB1              <-----------RAV1(2)         <---------ALFIN1   --------->SPL7            <---------AHL20(2)   tttctcaatggaattttcaggttgggttgcgtgtattgttctctccacttagttccaatatcgtacttcgtacagcatggtgagttttttttattgtaag  17308200                                                                                             <-------                                                                                          <---------WOX13(1)                                                                    <------MYB83         <---------ANAC58                                                                    <------MYB46(1)      <---------ANAC58                                                                  <---------WOX13(1)  <---------WOX13(1)                                                                --------->ATHB12    --------->ATHB12     --------->ANAC58                                          <---------YAB1      <---------YAB1<---     --------->ANAC58                                      --------->ATHB12       ------>ZmHOX2a(2)   ---------->DOF2                   <--------P           --------->ICU4         <---------At4g35610 ------>GT1                      <-----------RAV1(2)   ==================================HOX2a_HOX2a --->DAG2                --------->ATHB12              <------ZmHOX2a(1)         --------->At4g35610   gtgaagaaagccatatagttgctagaatcaatggtacaggtagacgaatgaattggaggaatgatttgattggtgagattgtgatctgattgagtgattc  17308300  Previous    Next  AGI:  At4g36710.1    Description:  scarecrow transcription factor family protein. similar to scarecrow-like transcription factor 6 (SCL6) [Arabidopsis thaliana] (TAIR:AT4G00150.1); similar to SCARECROW-like protein [Brassica napus] (GB:AAT75161.1); contains InterPro domain GRAS transcription factor (InterPro:IPR005202) Range:  from: 17305762    to: 17307647    Orientation: Forward Links:  TAIR  MIPS    AGI:  At4g36720.1    Description:  HVA22K (HVA22-LIKE PROTEIN K). Identical to HVA22-like protein k (HVA22K) [Arabidopsis Thaliana] (GB:Q6NLY8;GB:O23209); similar to ATHVA22D (Arabidopsis thaliana HVA22 homologue D) [Arabidopsis thaliana] (TAIR:AT4G24960.1); similar to ATHVA22B (Arabidopsis thaliana HVA22 homologue B) [Arabidopsis thaliana] (TAIR:AT5G62490.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO47660.1); contains InterPro domain TB2/DP1 and HVA22 related protein (InterPro:IPR004345) Range:  from: 17307773    to: 17309871    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version