Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                        <---------ANAC58             <-------TEIL         ----------->GT1 <---------ZAT2    ----------->RAV1(1) --------->ALFIN1                    --------->AHL20(2)--------->YAB1   --------->REM1(1)  <---------ANAC58                    <---------ANAC55(2) --------->AHL20(2)  <-------TEIL<---------ANAC55(2)           <---------GLK1(2)           --------->ANAC55(2) --------RAV1(2) ---------->DOF2<---------YAB1  <---------YAB1    <-----------HVH21     <----------DOF2   caggtacaacatagttacatatagccgtgctgctatgtttgagaaagattatttttgatcacttaaattgtcatatgtaataaaaaaaaactttcagtta  17305400                                                                                      --------->TOE2(3)                                                                                      <---------DAG2                                                                                --------->TOE2(3)                                                                               <---------ICU4                                                                               --------->YAB1                                                                               --------->ATHB12                                          ----------->GT1                     <---------ATHB12                                    ---------->DOF2                           --------->ICU4                               ------------------------>ANAC81XXXXXXXXXXXXXXXXXXX>MIR156H               ----------->GT1<------ZmHOX2a(1)     --------->MYB46(3)      --------->GLK1(1)     ----------->GT1        <---------TOE2(3)     <-----------GT1  ---------->DOF2 <-----------GT1   aatgtttttgtaaaatactgtttaaaattttaggatgaaaaagactgaaaaaaaaccactcagacaaaaaaaagagagaaatcattaacctttttaaaac  17305500                                                               <----------DOF2                                                            ------>ZmHOX2a(2)                                                           <---------GLK1(1)                                                           --------->GLK1(1)        <---------AHL20(2)                                                          <---------AGP1          <---------YAB1                                                          --------->ARR11(3)    <---------AHL20(2)                                                          <---------ARR11(3)   --------->AHL20(2)                                                         <---------CCA1(2)     <---------AHL20(2)           <---------AHL20(2)                        <---------ANAC58       --------->ATHB12         <----------DOF2                             <---------ANAC58      <---------ATHB12  --------     ---------->ID1                                 --------->ZAT2     --------->YAB1<---------YAB1-- <----------DOF2<-----------GT1     <---------YAB1  <---------ZAT2    <---------ATHB12  <---------YAB1 ------>ZmHOX2a(1)    <----------DOF2           --------->ALFIN1    --------->WOX13(1)<---------AHL20(2)   atcctttttctcttttattttcaactttcacattcttgatgatcaacatagtggagcttggatctcttttcaatcaaatgatttatttttatttttaaag  17305600                                                   <---------YAB1                                 --------->At4g35610     --------->At4g35610      <---------DAG2        ---------->DOF2     <----------DOF2      <----------DOF2    <----------DOF2    <-----------GT1   <---------ARR14(2)---------->ID1       <---------HSFC1(2)                      ----------->GT1  <------ZmHOX2a(1) <-----------GT1       --------->HSFB2a(1)                <---------ANAC46       - -->DOF2           <-----------GT1        <---------HSFB2a(1)         <---------ANAC58             <- ------->At4g35610<---------AHL20(2)      --------->HSFC1(2)          <---------ANAC58             --   cagaggaactttatttgtattttatccctttaaagagctgtagaagtttccttttcattagctacagaagttgctagttgtgcatagtatatagttttgg  17305700               <---------AHL20(2)               --------->AHL20(2)              --------->AHL20(2)       <---------YAB1    <---------AHL20(2) <---------AHL20(1)                                                                     --------->ANAC58 <---------ARR11(3)                              <-------GAMYB                          --------->ANAC46 --------->AHL20(1)                              --------->At4g35610                  --------->MYB52(1) --------->ARR11(3)                              <---------At4g35610              --------->YAB1 --------->AHL20(2)                      <---------ARR11(3)                       --------->AHL20(2) -------->CCA1(2)                        --------->ARR11(3)                    --------->YAB1 --------ARR11(3)                    <---------AHL20(2)                      <---------YAB1   ------- ------->ARR11(3)        --------->AHL20(2) <----------DOF2   *TSS      ----------->GT1 --------->ANAC58   agatatattatgagaaattaatacaaaataaaaactgatttaaaatctttcagttgaatttcatgtgaaatagtatgttattaataaaaaacggaatcat  17305800                                                                          <-------GAMYB                                                                          --------->At5g28300                  <---------GLK1(2)  <---------YAB1             <---------ARR14(2)               --------->YAB1        <---------AHL20(2)         <-----------HVH21              <---------ATHB12     <---------ICU4               --------->ARR14(2)     --------->YAB1               --------->ICU4              --------->LBD16     <---------ICU4      <---------ANAC58                    --------->ANAC46     -------->ATHB1      <---------ANAC55(1)           <---------MYB52(2)--------------->ANT     --------->ATHB12    <---------ANAC46            ------>MYB46(1)  ------------>AtMYB77    <------    <---------ATHB12     <---------ANAC58  ----------->GT1  <---------LBD16     ---------->DOF2 <---- -->YAB1    --------->WOX13(1) --------->AHL20(2)    ------>MYB83<------ZmHOX2a(2)      <---------GLK1(1)   atacaaatcattgtcaatcagattgtttcgtgtataaatattattctgtaaaaccaaacaaacccggatcagacacggttaccaaagttgaaatctcttt  17305900                                                          ------>NtERF2                                                         --------->DEAR3(1)                                                       --------->LBD16                                                       <---------ATERF1(1)                                                      --------->DEAR3(1)                                                      --------->ANAC58                                                      --------->ANAC58                  --------->YAB1                      --------->ANAC46                 ---------->DOF2            --------->ANAC58                          --------->bZIP60(2)         ----------->GT1        --------->ANAC58                             <---------LBD16         --------->ANAC58        --------->ANAC58                             --------->RAP2.3(1)     --------->ANAC46    --------->ANAC58                             --------->ANAC58            --------->ANAC58    --------->ANAC58                             --------->ANAC58          <---------ALFIN1    --------->ANAC46   ---------->DOF2         ---------->DOF2   <<<<<<<<<TBF1  ---------->DOF2 ----DOF2   --------->ANAC58              <----------DOF2<---------ALFIN1----------->RAV1(1)     ---- -----AHL20(2) ---------->DOF2-------->P <---------DAG2------>NtERF2     <---------ALFIN1      ------   atttgcacgcactcactcaaagataaaaagcttaccactctcacctttcaaaagccccgccaccttcttcttctcccacacacaaagaaaaaagacagaa  17306000                                                                                                  ---                                                                                                 ----                                                                                                 ----                                   <----------DOF2                                              -----                                  <---------DAG2                                               ------                       ---------->DOF2                            <---------ARR14(2)          -------                    --------->TOE2(3)                            <---------GLK1(1)         --------->ANAC58                    --------->TOE1(3)  <----------DOF2 ----------->RAV1(1)                 --------->ANAC58       <----------DOF2 <---------DOF5.7(2)            --------->ANAC46                --------->ANAC58       <---------DAG2--------->DOF5.7(2)            --------->ANAC58                  --------->ANAC58 ------->GT1   <----------DOF2 <---------ALFIN1     --------->ANAC46                  --------->ANAC46 ---->DOF2  <-----------GT1  <---------ATERF1(1)    --------->ANAC58               ------>ZmHOX2a(1)   agaaaaaaactttttttcttttcgttaaaggctccacctttctttcttcttaacacacaacacatgaaaatccctgcatcatctcctcaagacacgacca  17306100        ----------->RAV1(1)       --------->MYB46(3) ------>MYB46(3)                  --------->ANAC55(2) -->MYB83 --------->ZAT6          <---------ANAC55(2)                                 ---------->DOF2 -->MYB46(1)              --------->YAB1                   <---------ANAC58         <---------YAB1 ------>RAV1(1)       <---------YAB1                       <---------ANAC58       --------->YAB1 --->AtMYB61          <---------ZAT6  <---------YAB1 <-----------HVH21            <---------ICU4 -->MYB46(3)  --------->YAB1 <---------ICU4      ------->TEIL                    <---------ATHB12   acaacaacaacaacactaatagtactgatagtaatcacttatcaatggacgaacatgtcatgcgttcaatggattgggattccatcatgaaagaattgga  17306200                                                         --------->GLK1(2)                  ---------                                                        <---------ARR14(2)                  <--------                  ------>ZmHOX2a(1)                ----------->RAV1(1)               <---------DEAR3(2)             <---------At4g35610                --------->AtMYB61                 ------>NtERF2         --------->GLK1(2)                      --------->TOE2(3)                 <-----------HVH21         --------->ARR14(2)                     ------->GAMYB                    <---------ANAC46         <---------ARR14(2)                 --------->MYB46(3)      <-----------GT1<------NtERF2        <---------ARR14(2)                --------->AtMYB61 <-----------GT1      --------->DEAR3(1)        <---------GLK1(2)              <-----------GT1  <---------GLK1(2)     --------->ANAC46   ----      <---------YAB1                --------->ARR14(2)  --------->ARR14(2)<----------DOF2  <---------CCA1(2)   ----------->TGA1           <-----------GT1  --------->MYB46(3)----------------------->TaNAC69(2)   gcttgatgacgattctgctcctaactcacttaaaaccggtttcaccacaaccacaacagattctactattttgcctctttacgccgtcgattcaaatctc  17306300  Previous    Next  AGI:  At4g36710.1    Description:  scarecrow transcription factor family protein. similar to scarecrow-like transcription factor 6 (SCL6) [Arabidopsis thaliana] (TAIR:AT4G00150.1); similar to SCARECROW-like protein [Brassica napus] (GB:AAT75161.1); contains InterPro domain GRAS transcription factor (InterPro:IPR005202) Range:  from: 17305762    to: 17307647    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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