Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                        <---------HSFC1(2)                                                      --------->HSFB2a(1)                                                      --------->HSFC1(2)                                                  --------->ANAC58                                                  --------->ANAC46                                                  --------->ANAC58                                                <-----------GT1                                            ------>ZmHOX2a(1)              <-----------GT1           <---------DEAR3(1)    <----------DOF2--------->YAB1           <----------DOF2            <       <---------ZAT2      <---------GLK1(2)--------->ICU4           <---------CCA1(2)          -----       --------->ZAT2  <---------ZAT14   ---------->ID1        <----------DOF2               <-------   ctctatccctgcttcggcgagagacttcagagtctctttctctgtccttatcacgacccttctctctttctctatctttacttcttgatgtctctctttc  17297300                     <-------MYC4         --------->GLK1(2)    --------->ANAC58 ------->MYC2    --------->ANAC46 <-------MYC2    --------->ANAC58 <-------MYC3    --------->ANAC55(2)                       --------->WOX13(1)    <---------O2     ------->MYC3       --------->TOE2(3)                                           -    <---------ANAC55(2)              --------->ARR14(2)           <---------ATHB12           --------    --------->O2 --------->ZAT14  --------->ANAC46           --------->GLK1(2)               <------- -----------HVH21<---------ZAT14--------->ANAC58          <---------TOE2(3)      <----------DOF2    < ---->YAB1       <---------ZAT18--------->ANAC46  <---------At5g28300          --------->At4g35610--- ---DOF2<---------GLK1(2)       --------->ANAC58 --------->YAB1 --------->WOX13(1)          <--------   atggtcacgcgattctctctgcacatgtaaacacacccaaaacctcatcaattacagtttaagaatcaatgaaacagaagcagctttaaaactaatcatc  17297400 <---------ICU4 -------->ICU4                                                                               <------- ->YAB1                                    <-------TEIL                                ----------->GT1 --ICU4<---------GLK1(2)                  --------->ARR14(1)                --------->ARR11(3) ---------YAB1                           <---------GLK1(2)        <------ZmHOX2a(1)   ----------->GT1 ------>YAB1                             --------->ARR11(1)   --------->TOE1(2)  <-----------RAV1(2)< -ATHB12                        <------ZmHOX2a(1)       --------->YAB1      <---------ARR11(3)      <   tcataattcgattctcaattcaatccaattgctaggaaatatagattcgaaactccaactataagctaggagattgaagataatcaggggggaaattacc  17297500                                         ------>NtERF2                                        --------->RAP2.6(2)                                      <------NtERF2                                      <---------ATERF1(1)                                     --------->DEAR3(1)                      --------->SPL7                                    --------->ATERF1(1)                    <---------SPL7                                    <------NtERF2                         ------->GAMYB                                   <---------ATERF1(1)                   --------------->AtSPL3                                 --------->ATERF1(1)                    -------->P                                 <------NtERF2                        --------->MYB46(3)                                <---------ATERF1(1)                  --------->At4g35610                                ------>NtERF2                        <---------At4g35610    ---------     <---------ANAC58           <-----------HVH21                   --------->ANAC58        <--------     <---------ANAC58          --------->DEAR3(1)                <-----------HVH21      --------->O2 ----GT1                       <---------DEAR3(1)                <-----------TGA1<---------MYB52(1) ---------ANAC58     ------>ZmHOX2a(1)------>NtERF2   ---------->ID1--------->ANAC58  --------------- ---------ANAC58   ------>ZmHOX2a(2)<---------RAP2.6(2)   ---------->DOF2<------------AtMYB77 ------>ZmHOX2a(2)   ttgggtttcgagtccaattgatcctcgatttcgccgtcgcggccaccattctcttcgtcgtaaatcgcgtcagcaaccgtaccgtttccctcgtgatctt  17297600                                                                                     <-------TEIL                                                                                    --------->CCA1(2)                                                                                    --------->GLK1(2)                                                                              <------NtERF2                                                                             <---------RAP2.6(3)                                                                            --------->DEAR3(1)                    <------NtERF2                                         --------->At4g35610      <-                   --------->LBD16                                    <-----------HVH21    ----------        --------->ARR11(3)                                      --------->ARR14(2) <---------GLK1(2)        <---------ARR11(3)                                      --------->GLK1(2)  --------->ARR14(2) >ARR11(3)        --------->LBD16                --------->LBD16<---------ARR14(2) <---------ARR14(2) -ARR11(3) <----------DOF2  ------->GAMYB      <---------LBD16 <---------GLK1(2) ----------->ARR10--- ------>WRI1     <---------LBD16        <----------DOF2--------->AHL20(2) <---------At4g35610   <----   cgaattcagacatcttttcgccggaatcaacgctctctatctctttctcaccggagataaatttagaatctgtttcagccgtcgagattcgaagaaaggg  17297700                                                             --------->ANAC58                                                             --------->ANAC55(2)                                      --------->KAN4(2)      --------->ANAC46                                     <---------KAN4(1)       --------->ANAC58                                     --------->KAN4(1)       <---------ANAC55(2)                                    <---------KAN4(2)       <---------LBD16                                   <---------GLK1(2)       <---------ALFIN1                                <---------TOE2(3)         -------->P    <-----------HVH21                                --------->ANAC55(2)       <---------REM1(2)                                <---------ANAC55(2)      ========================RAV             ------>MYB46(1)    <---------ANAC46         ----------->RAV1(1) --------MYB46(3)              <---------LBD16   <---------YAB1        ------>ZmHOX2a(1) >DOF2     <---------MYB59 --------->WOX13(1) <---------AHL20(2)     ----------->RAV1(2) ------>ALFIN1            *TSS--------->MYB52(1)<-----------TBP----------->HVH21                  --- -----ANAC46 ------>MYB83<---------ZAT18      --------->AHL20(2)<---------PCF5              <--------   gtggatgcagaaaccaaactattttagggcaattacggattattctatttttttatagccaacacgggacctcctgtgagggtatttttgtaaatgtcat  17297800                                                       <------------ATHB5                                                      <---------ATHB51                    <---------YAB1                    <---------ATHB12                 --------->ARR14(2)            --------->LBD16                 <---------ARR14(2)        <---------ARR14(2)                 --------->GLK1(2)         --------->ARR14(2)       <---------ANAC58 -------->TBP----------------->AGL1      <---------ZAT18            <---------ANAC46    <---------DAG2 ---HVH21 <---------DEAR3(2)           <---------At4g35610          <---------ANAC58    <----------DOF2   ataaaaacaggccggtccaaatctgataaggcccattattcagcgcatccggtccaatagttggcccaattcgtgtttgggataaatctactttttgaga  17297900                      --------->CCA1(2)                     <---------ARR14(2)                     --------->ARR11(1)                     --------->ARR11(3)                     <---------ARR11(3)             <----------DOF2   <---------ARR14(2)            <---------DAG2     --------->GLK1(2)                              --------->MYB46(3)            --------------->AGL15                      <----------DOF2        --------->REM1(1)            <---------------AGL15                     <---------DAG2        ----------->RAV1(1)         <-----------GT1       --------->ARR14(2)  <-----------GT1 <---------ARR11(3)      ------->TEIL   --------->ARR14(2)       --------->AHL20(2)   --------->ARR11(3)   <---------YAB1<-----------------AGL1   <---------TOE2(3)       <---------CCA1(2)     <---------ZAT14   gttttatgaatttgccttttcaagatatggcccaatctgtgtttgagataaatttgccttttattccaatatctcttgcaacaacaagagaacagagcat  17298000                   --------->ANAC46      --------->YAB1                 <-----------GT1       --------->AtLEC2                --------->TOE2(2)   <---------YAB1              <---------ARR11(3)  <-----------GT1       <---------WOX13(1)         --------->YAB1      <---------ANAC58        <---------MYB52(1)                                    <-------TEIL      <---------ANAC58       <-------GAMYB     <----------DOF2             <-------GAMYB     --------->ATHB12     ------>ZmHOX2a(1)    --------->TOE2(3)          ----------->GT1       -----   gggaagttgattgcattatctacgactcctccgttatcaccattcaaaactttaatatgccgaagctatagcaagagggttacaaatacattatacaatt  17298100                                                                                               ------                                                                                         --------->ANAC58                                                                                         --------->ANAC58                                                                                         --------->ANAC46                                                                                        --------->WOX13(1)                                                                                     <-----------TGA1                                                                                     <-----------HVH21                      --------->ANAC58                ----------->RAV1(1)           <---------bZIP60(1)     ------>MYB83     --------->ANAC58               --------->MYB46(3)         <--------------------     ------>MYB46(1) <---------------AtSPL8        <-----------GT1   --------->YAB1 --------->bZIP60(1) ---->YAB1           <---------------AtSPL3    --------->YAB1   <---------YAB1 --------->MYB52(1)   gtaaaccaaatgacataagttagcaagtacgactactactacaagtgtataataaaccacagagttatcaataacaagaagtaacgtcgtcactcaacag  17298200  Previous    Next  AGI:  At4g36690.1    Description:  ATU2AF65A; RNA binding. similar to U2 snRNP auxiliary factor large subunit, putative [Arabidopsis thaliana] (TAIR:AT1G60900.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN68321.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO22878.1); similar to unknown [Capsicum frutescens] (GB:ABU45190.1); contains InterPro domain RNA recognition motif, RNP-1; (InterPro:IPR000504); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain U2 snRNP auxilliary factor, large subunit, splicing factor; (InterPro:IPR006529) Range:  from: 17293996    to: 17297726    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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