Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                           ------>ZmHOX2a(2)                         <---------RAP2.6(3)                                            --------->CCA1(2)                        <---------ANAC58                 <---------ANAC55(2)            <------ZmHOX2a(2)                        <---------ANAC58                 <---------ANAC58              <---------ARR14(2)                        <---------ANAC55(1)              <---------ANAC58              <---------ARR11(3)                        --------->ANAC55(2)              --------->ANAC55(2)           --------->ARR14(2)                        <---------ANAC46      --------->HSFB2a(1)                      <---------AGP1                        <---------ANAC55(2)   <---------HSFC1(2)                       --------->AGP1                      --------->ZAT18         --------->HSFC1(2)                       --------->ARR11(3)                   --------->ALFIN1           <---------HSFB2a(1)                    ----------->ARR10              ------>ZmHOX2a(2)              <---------TOE2(2)                      --------->SPL7            <---------ARR14(2)               <---------TOE1(2)                     <---------MYB52(1)            --------->ARR14(2)           <---------HSFB2a(2)                      <---------SPL7            --------->ARR11(3)           --------->HSFB2a(2)                  <---------WRKY18(1)        <---------At4g35610            --------->At4g35610     --------->AHL20(2) <---------RAP2.6(3)        --------->At4g35610         <---------At4g35610  <---------ANAC46  <---------ANAC58 ---ANAC46----------->HVH21      ------>ZmHOX2a(2)       ----------->GT1   <---------ANAC58   tgaaggaaacagctgatctgggtgtgccgtattgatccatctgctcgaaggttctcatggcgtgattaaacatagaggcttggccgtaagatctgataag  17293400                                                                                            ------>NtERF2                                                                                           --------->DEAR3(1)                                                                                           <---------                                                                                      <---------ANAC58                                                                                      <---------ANAC58                                                                                 --------->O2                                                                                 <---------O2                                                                                 ====================                                                                                 <---------TGA1a                                                                               <---------ALFIN1             <-------TEIL                                                     <------NtERF2<---------DEAR3(1)            --------->ARR14(2)                                               ----------->RAV1(1)          --------->HSFB2a(1)                        <---------TOE2(3)       ------>NtERF2 ----------          <---------HSFB2a(1)         <-----------RAV1(1)                   ----------->HVH21<------NtERF2  ----------->GT1              <------ZmHOX2a(2)     <---------TOE1(3)      --------->DEAR3(1)<------  <---------ANAC46<----------DOF2 <---------YAB1--------->WOX13(1)     --------->MYB52(1)<---------ATERF1(1)   cgtagagtagaaaggttcttctttgattttgggatcatttttgtgggattcaattagggtttcgatgtctgagaaacggcgacacttggcgaggcgacga  17293500                                                                       --------->ARR11(3)                                                                       <---------ARR11(3)                                                                 ------>ZmHOX2a(2)               <------NtERF2                                   <---------AGP1              <---------SPL7                                   <---------ARR11(3)             <---------ANAC58                                  <---------ARR14(2)      <----------DOF2                                          --------->ARR11(3)                ----    --------->At4g35610                                       <---------CCA1(2)                 <----    <---------At4g35610                                      ----------->ARR10       ------>ZmHOX2a(2)  <---------ZAT18                                         <---------ANAC58         --------->ARR14(2)  --------->ZAT14    --------->At4g35610      ------>ZmHOX2a(2)--------->ARR14(2)  <---------ARR14(2) -ID1--------->ARR11(3)                    --------->ATHB12 <------NtERF2      --------->ETT(1) ----- ================bZIP_DOF      ======================HOX2a_HOX2a<------ZmHOX2a(2)<------NtERF2  <---- ->HVH21   <---------ANAC46 <-----------RAV1(2)           <---------ANAC58     <---------LBD16 <----- ---MYB52(2) <---------ANAC58  <------ZmHOX2a(1)          <---------ANAC46<----------DOF2   <--------   acagtgagctcttgggcgtagcgagatgaaacaggagaggctgagtgatcggagacattggcgtagatcttaagagctttgtcgggatcgtgttctttcc  17293600                                                                    --------->At4g35610                                                                    --------->ATERF1(1)                                                                    <-------GAMYB                                                                    --------->ZAT2                                                                    <---------ZAT2                                                                    ----------->RAV1(2)                                                                    <---------At4g35610                                                                    <------NtERF2                                                                   <---------ATERF1(1)                                                                   ------>NtERF2                                                                   <---------ERF1                                                                   <---------MYB46(3)                                                                  --------->ATERF1(2)                                                                  <---------RAP2.6(2)                                                                  <---------RAP2.3(3)                                                                  <---------RAP2.3(2)                                                                  <---------ATERF1(2)                                                                  <---------DEAR3(1)                                                                  <---------ANAC46                                                                 --------->ATERF1(1)                                                                 <------NtERF2                                                                 --------->DEAR4(2)                                                                <---------DEAR4(2)                                                              --------->ATERF1(1)                                                              <---------At4g35610                                                            <---------WRKY12                                                            ---------->CDC5                                                           <---------MYB52(1)                                                          <-----------HVH21                                                     <---------SPL7<---------RAP2.3(1)                                             --------->ALFIN1 <------NtERF2                                  ----------->HVH21--------------->AtSPL3                                 --------------->AGL15    <-----------TGA1                                <---------ANAC46   <---------------AtSPL3     --------->ARR14(2)    --------->ZAT18             <---------AtLEC2 <---------MYB46(3)<---------DEAR3(2)    <---------ZAT18             <---------ANAC58--------->ALFIN1<---------RAP2.3(1)    <---------ZAT14             ----------------->AGL1  --------->DEAR3(2)    <---------ARR14(2) ----->LBD16                    <-----------------AGL1 --------->SPL7<----------CDC5 -----ANAC46              --------->ARR11(3) <---------DEAR3(1) <---------ATERF1(1) ---->HSFB2a(2)           <---------ARR11(3)<---------ABI4(1) --------->At4g35610 -----HSFB2a(2)           <---------GLK1(2) <---------At4g35610<---------DEAR3(1) ----LBD16               <---------RVE1(1)  --------->At4g35610<---------RAP2.3(2)            <------NtERF2 --DOF2      <----------DOF2    <---------ANAC58<---------AtMYB61--------->RAP2.3(1)        <--------   ggagagtggacttagctttggagacagagattttgcctgaagagggagcggtggtcgtaccgtcagcggcggctgaggcaaatcggcgaacaaggcggag  17293700                                                  <---------ANAC46                                                  <---------ANAC58                                                  <---------ANAC58                                                 <------NtERF2         <---------TOE1(3)                                               <---------ANAC46    <----------DOF2                                               <---------DEAR3(1) <----------DOF2            --------                                               --------->ALFIN1 ------>NtERF2                <-------                         --------->ARR14(2)  <---------MYB46(3)--------->ANAC58              <-------                      ----------------->AGL1--------->ALFIN1   --------->ANAC58       --------->MYB52(1)            --------->ANAC58         <---------ANAC46         --------->ATERF1(1)  <---------ANAC58     <---------HSFB2a(2) <---------ARR14(2) <---------AtMYB61<---------ATERF1(1)   <---------ANAC58 -ANAC46    --------->ANAC58       <---------ANAC46    ---------->DOF2 <---------TOE2(3)    <--------   agaaatacgagaagaagccattttgcagaaatgggtattgtggagagtggtggcgagaaaaggagacgcctttagggttttagtggcttaacagagattt  17293800                             <----------DOF2           ------>MYB46(1)               --------->ANAC58     <-----------GT1      *TSS                         ------>MYB83                  --------->ANAC58 ->ARR11(3)              <----------DOF2             <---------MYB59              <---------ZAT14 --ARR11(3)        <----------DOF2          --------->At4g35610                   --------->ZAT14 --GLK1(2)     <---------ANAC58           --------->YAB1                        <---------------AtSPL8 -RVE1(1)      <---------ANAC58     --------------->AGL15             ------------>CBF   ttgggttttacaagtttgcttctttttctttcttttttcttctatcagaagagaaccaaactacttgaatatttcaatagagagagtactcaacttcttg  17293900                                                                    ----------->GT1                                                                    <---------ANAC46      <---------AHL20(2)                                                            ----------->GT1               --------->AHL20(2)                              --------->CCA1(2)          --------->ICU4            <---------TOE2(3)               <-----------HVH21     --------->YAB1    --------->YAB1        <---------YAB1     <----   tgttgatttagaacatatgtcacatttacgagagacgaatgatgttttacgagggactcatgatgttattctgtgaataatttttgagataaatatttaa  17294000                                          --------->ALFIN1                                         <-------MYC3                                         ------->MYC3                                        <---------TGA1a                        --------->ARR11(3)                                        <---------O2                        --------->DAG2                                        --------->O2                      ---------->DOF2                                        --------->TGA1a               --------->ANAC55(2)                                   --------->ANAC58                   --------->ANAC58                          --------->TOE2(3)                           --------->AtLEC2                         ----------->GT1=============================================bZIP_DOF            --------->CCA1(2)      --------->ANAC46                   --------->ANAC58           --------->ARR11(1)  --------->YAB1                         --------->ANAC46           --------->ARR11(3) <---------YAB1 <---------ETT(2)         --------->ANAC55(1)      ------           <---------ARR11(3)--------->AHL20(2)   --------->GLK1(2)   <---------ANAC55(2)   --------- -----TOE2(3)    ----------->GT1   --------->ANAC58                <---------ATHB12         ---------   gaaatagaccaaagatatgagataaaaacgttataataagcaacgtgtcgataatctcatactcttacaatcacgcaaaagggtcttgaaactgaagcaa  17294100       <----------DOF2  <---------MYB59 --------->ANAC55(2)         ---------->DOF2                                            <---------ZAT14 <---------ANAC55(2)  --------->ANAC58                                                  --------->ZAT14 ---->DOF2            --------->ANAC58               <-----------GT1                  --------->ANAC46 >ANAC58            ---------->DOF2               <---------ICU4             ----------->GT1 >ANAC58    --------->ANAC55(2)                   --------->YAB1            --------->LBD16 ---------   agtacttaacttttaagtaatagaaagcaaacaaagaagtgatcaggctccataatcaccctgttcaaacttgtcttcagggtaatacactgcaacgact  17294200                               ------->TEIL                               <-----------ARR10                               <---------ARR11(1)                               --------->GLK1(2)                                          --------->ARR11(3)                               --------->ARR14(2)                                         <---------AHL20(1)                               <---------ARR14(2)                                         --------->AHL20(1)                              <---------GLK1(2)                                           <---------ARR11(3)                 ------>MYB83 <---------ARR14(1)                                         --------->AHL20(2)                 ------>MYB46(1)                                                      <---------AHL20(2)                 -------->P   <---------CCA1(2)         <---------ARR14(2)           --------->AHL20(2)                ------>ZmHOX2a(1)                       --------->ARR14(2)       <xxxxxxxxxxxxxxxxxxx          <<<<<<<<<CBP60g   --------->LBD16        --------->At4g35610          <---------ALFIN1     ------>ZmHOX2a(1)<---------ATHB12        --------->ANAC58              --------->At4g35610 >MYB46(3)<<<<<<<<<SARD1   --------->HSFB2a(2)--------->ANAC58              ----------->RAV1(2)   tcatttcctccaaatttcctaccattcatcccgaatcttgccctagtcgagccatctgtatcggcatacttcaaaaacacctgcacattaaatatatcag  17294300  Previous    Next  AGI:  At4g36680.1    Description:  pentatricopeptide (PPR) repeat-containing protein. similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT2G18520.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN68320.1); contains InterPro domain Pentatricopeptide repeat (InterPro:IPR002885) Range:  from: 17292233    to: 17293826    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At4g36690.1    Description:  ATU2AF65A; RNA binding. similar to U2 snRNP auxiliary factor large subunit, putative [Arabidopsis thaliana] (TAIR:AT1G60900.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN68321.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO22878.1); similar to unknown [Capsicum frutescens] (GB:ABU45190.1); contains InterPro domain RNA recognition motif, RNP-1; (InterPro:IPR000504); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain U2 snRNP auxilliary factor, large subunit, splicing factor; (InterPro:IPR006529) Range:  from: 17293996    to: 17297726    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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