Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                   --------->ANAC46                                                          <---------ARR14(2)                                                          --------->ARR14(2)                                                     --------->MYB52(1)                                                    <---------WRKY12          ----------->GT1                           <---------WRKY38(1)         ----------->GT1                       --------->YAB1    --------->ANAC58  --------->TOE2(3)                       <---------------AGL15  --------->ANAC58 --------->YAB1                          <-----------------AGL1---------->DOF2 ------->ANAC58                         -------->P<-----------HVH21 ------->ANAC58--------->ICU4          <-----------GT1<---------At4g35610   caagcattaatgggataaatattagtagtaagaaaattgacttaccctattatgtcaacggattccaaagcaactcaattgaaatttgttttcttcaaac  17248100                                                              ---------->DOF2                                                            <<<<<<<GRF7                            --            --------->DAG2                                ------>ZmHOX2a(1)                 ---------           ---------->DOF2                     --------->ANAC46                       <---------ARR14(2)     ----------->GT1  ---------->DOF2   <---------GLK1(2) ----------->HVH21           --------->ARR14(2)   tcacaaacagttaaaaagcactagaaaagtcataaacttgcagaatttcacagaagagtcctgacaaagtcagagtgtttcccttgcaaatccagcgtaa  17248200                                                                                 <---------AHL20(2)                                                                                 <---------ICU4                                                                                --------->AHL20(2)                                                                                <---------AHL20(2)                                                                             <--------HAHB4                                                                             --------->ATHB51                                                                             --------->AHL20(2)                                                                             -------->ATHB1                                                                             <---------AHL20(2)                                                                            <---------ATHB12                                                --------->ARR11(3)          <---------ATHB51                           ---------->DOF2<---------At4g35610               --------->ICU4  ---------->DOF2    <---------YAB1       --------->At4g35610       <---------At4g35610           --- ------->YAB1     --------->ICU4          ----------->RAV1(2)       --------->At4g35610           --- -->GT1        <---------ARR11(3)  <---------GLK1(2)             ------>ZmHOX2a(1)         ----------   atcagaaagagaaacaagaactgatgatcaaaagcgagaatttcatctgagaacttgagcatagctcctctgcttccaattatttattacaaaaaaagaa  17248300            --------->YAB1            <---------ICU4           --------->ICU4     ----------->GT1                                           --------->WRKY18(1) ---------->DOF2                                         <---------At4g35610                      --- ------>TOE1(3)                         ---------->DOF2  --------->At4g35610                    <---- ------>TOE2(3)  ------->TEIL   <----------ID1    <---------DAG2                                <---- >DOF2   --------->YAB1         <---------ETT(1)  <----------DOF2     ---------->DOF2       <--------   ccctaaaacgaaaataatgaaactctatggtattccgacaaaaaaagagaaactttttcagatgggtcaagataaagaatgagtttttcgaggtttgttc  17248400           ------>ZmHOX2a(2)         --------->ARR14(3)         --------->ARR11(3)         <---------ARR14(2)                      <---------LBD16         <---------ARR14(3)             ----------->GT1         <---------AGP1                 <------MYB83         --------->ARR14(2)             <------MYB46(1)         <---------ARR11(3)            --------->MYB46(2)     ---------->DOF2                   --------->MYB111(1)                             <------ZmHOX2a(1) ------>AtLEC2                         --------->MYB111(2)                      <------ZmHOX2a(1) -----ANAC58        ----------->GT1    <---------MYB46(3)         *TSS        <---------TOE2(3) -----ANAC58      <-------GAMYB       <---------MYB55(1) ---------->DOF2  --------->YAB1         ---- -MYB46(3)<------ZmHOX2a(2)           <--------P----------->RAV1(2)    <------ZmHOX2a(1)   <---------ZAT14   gtgcaaagaaagatctcgagggttgaaaaaaaaaaaactggttggtaaaaacctggagaaaaagaagatgagaggattataaggaagaaggactgaagag  17248500                                                                                               ------                                                                                              <------                                                                                              <------                                                                                             --------                                                                                             --------                                                                                             --------                                                                                             --------                                                                                         --------->ATERF1(1)                                                                                         <------NtERF2                                                                                        ------>NtERF2                                                                                       <---------ANAC46                                                                                      <------NtERF2                                                                                      --------->ATERF1(1)                                                                                     <---------RAP2.3(1)                                                                                     ------>NtERF2                                                                                    <---------RAP2.6(2)                                                                                    <---------bZIP60(1)                                                                                    <---------DEAR3(1)                                                                                    <---------RAP2.3(3)                                                                                    --------->bZIP60(1)                                                                                   --------->ATERF1(1)                                                                                  <---------ATERF1(1)                                                                                 ----------->TGA1                                                          ---------->DOF2        ----------->HVH21                                                      <---------AHL20(2)        ---------------------                                             --------->At4g35610                <-----------HVH21                                             <---------ZAT2--------->DAG2     <---------DEAR3(1) <---     ----------->HVH21            --------->AHL20(2)  --------->AHL20(2)     <---------ORA47(1)------ ----->ALFIN1        ----------->HVH21       <---------At4g35610           ----------->HVH21<--------   tgttgaaatgacagcctttgtaaatgacagtcgattttaaatcgttgagctgctaattaaaaaagggacgatgagattggacggtgacggcgtctacgtc  17248600                              --------->ZAT18                              <---------ZAT18       <---------YAB1  --------->REM1(2)     <---------AHL20(2)<-----------HVH21 ----->HVH21        <---------ANAC58 -----TGA1          <---------ANAC58 -----HVH21         <---------ANAC46 ->ANAC58           <---------ANAC55(1)          <---------TOE1(1) ->bZIP60(2)        <---------TGA1a              <---------TOE2(1)                       --------->ARR14(2) ->ANAC46           <---------O2--------->DEAR3(1)                                       <---------ARR14(2) ->ANAC58           ==================================bZIP_DOF                        <---------ANAC55(2) -->TaNAC69(2)      <---------bZIP60(2)        <------ZmHOX2a(1)                 --------->WOX13(1) ------At5g28300   <-----------------------TaNAC69(2)                       --------->MYB59  -------- --->TGA2(2)      --------->ZAT18             <----------ID1         <---------AtMYB61--------->ANAC55(2) ---STF1          <---------ZAT14          ---------->DOF2        <---------MYB52(1)--------->AHL20(2)   accgtgtttatttttaagagtgccgtgtcaagcgcagactaaattgaaaggacgaggtctgagtgctcgttatggtcttaggtcaattacatatccaaca  17248700                           <-----------GT1                      <---------AHL20(2)                      --------->AHL20(1)                     --------->AHL20(2)                     <---------ICU4                     --------->ATHB51                    --------->ICU4                                 <-----------GT1                    <---------YAB1                                <---------AHL20(2)         <-------                  <---------ICU4                  --------->AHL20(2)                         <-------                 --------->ICU4              <----------DOF2     <---------AHL20(2)      <---------ANAC58    <---------TOE2(3)<---------AHL20(2)  <-----------GT1         --------->AHL20(2)      <---------ANAC58 --->RAV1(1)   ----------->GT1     <----------DOF2<---------AHL20(2)            ---------->DOF2  <---   aattctaatgttttttgtagtaattattttgacatctctttttattccttttttaaatggaagaaaatttaatcttttgaataaaagtcttccttgcttc  17248800                                                                                          >>>>>>>>>ARR2                                                                                          >>>>>>>>>ARR1                                                                                        <---------TOE2(3)                                                                                 <---------MYB59                                                                                <---------ANAC46                                                                                --------->ANAC58                                                                                <---------ANAC58                                                                                <---------ANAC55(2)                                                                                <---------ANAC58                    <---------YAB1                                              --------->ANAC58                  <---------ICU4                                                --------->O2                  --------->ATHB12                                              --------->ANAC55(2)                 --------->ICU4                                                 <---------TGA2(1)                 <---------YAB1                                                 =====================               <---------ICU4                                                   <---------bZIP60(2)               --------->YAB1                                                   <---------bZIP60(1)              --------->ICU4              --------->ATHB12                      --------->TGA2(1)            --------->YAB1                <---------ICU4                        ----------->GT1        <---------AHL20(2)               --------->ICU4                         --------->bZIP60(1)       --------->AHL20(2)                <---------YAB1                         <---------O2       <---------AHL20(2)                <---------ATHB12                       <---------TGA1a --ANAC58  --------->ICU4               <---------TOE2(3)                      ----------->STF1    <- --ANAC58--------->YAB1  ------------>MYB.PH3(2)                             ----------->TGA1   <---- -------DOF2<---------ICU4  ----------->GT1      <-----------GT1      <---------WOX13(1)<---------YAB1   tttggtttttttaataatcatgattagagtttgttaaaaactaatgattttaaaccattctttctaatggagattgatagtgacgtaactaagattgttt  17248900                                                            <---------AtLEC2    --------->AHL20(2)                                                       <----------DOF2          --------->YAB1                                                      ------>ZmHOX2a(2)     <---------AHL20(2)                                                    --------->ARR11(3)      --------->AHL20(2)                                                    <---------ARR11(3)      <---------YAB1                              <---------ZAT14   <-------GAMYB              --------->AHL20(2) ===========================bZIP_DOF           --------->MYB46(2)          <---------AHL20(2) --------YAB1        --------->ARR11(3)        --------->MYB52(2)     <---------YAB1   ------->MYC3 -----AHL20(2)   ---------->DOF2             <---------MYB52(1)     ----------->GT1    <-------MYC3   tattcttgaatttttcagtaaaagacattgactatagttttggttaagttagttgatctttttcatgaaattgtgattttaattatacacatggtagagt  17249000  Previous    Next  AGI:  At4g36550.1    Description:  binding / ubiquitin-protein ligase. similar to armadillo/beta-catenin repeat family protein / U-box domain-containing family protein [Arabidopsis thaliana] (TAIR:AT1G67530.1); similar to bg55 [Bruguiera gymnorrhiza] (GB:BAB55653.1); contains InterPro domain Armadillo-type fold; (InterPro:IPR016024); contains InterPro domain Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); contains InterPro domain Armadillo-like helical; (InterPro:IPR011989); contains InterPro domain U box; (InterPro:IPR003613) Range:  from: 17245403    to: 17248466    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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